NO19G01840, NO19G01840 (gene) Nannochloropsis oceanica

Overview
NameNO19G01840
Unique NameNO19G01840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1402
Alignment locationchr19:545992..547393 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:545992..547393 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO19G01840 vs. NCBI_GenBank
Match: EWM23674.1 (hypothetical protein Naga_100030g27 [Nannochloropsis gaditana])

HSP 1 Score: 122.9 bits (307), Expect = 1.100e-24
Identity = 61/106 (57.55%), Postives = 88/106 (83.02%), Query Frame = 0 
Query:   81 TIHYATLWALPAIVASLLLLNFMDMALMGVHSLAVHTRSLPGHDLAVRLNNLLEKLLGGKQIPFTITSVILGAVLVAMISCSISLNRLVILKSEEVELLREEGLKR 187
            ++ YAT+WA+PA++ASL LL  +D+AL GVH+L + TRSLPGH     ++NL+E+L GGKQ+ F+ITSV+LGAVL+A++SCSI L++LV++K+EE+E LREE  +R
Sbjct:    5 SLQYATVWAVPAVLASLTLLIALDIALKGVHTLTLRTRSLPGHIFLAHIDNLIERLFGGKQLSFSITSVMLGAVLIAIMSCSIILHKLVVMKAEEMEELREEKRRR 110
The following BLAST results are available for this feature:
BLAST of NO19G01840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23674.11.100e-2457.55hypothetical protein Naga_100030g27 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004524NSK004524Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01840.1NO19G01840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599260gene_7586Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g27gene6772Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01840.1NO19G01840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01840 ID=NO19G01840|Name=NO19G01840|organism=Nannochloropsis oceanica|type=gene|length=1402bp
ATGAAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGG
GCAACCCTGCGATAGCAAGCAGCCACGTAGCTTGATTGGCGATGGTGCGG
AGgttggatcgggctagctcgtctgctggtcagggagttgacatcctatt
gccgtccgtgcatatgtctttgcgtgctgtacaaagaatattgtgaactc
atgcggacacatagcatacactggtttcgataaatgaatcagtgttgcgt
atcatagaaatccgaagaacaaggcggcagcctcaactctggcccattcc
cccgttagatgcagtcacgtgctttgtttaccctgaagaaatctgtgtgc
cgggaataatgaaggctggaaagggaatgggaatggatggagatacagac
tggaaggaggagaatgagggcgggagtgaggaggagtggagtaacctcct
cacagCACCACTCCTTTCAATCTCCTCCTCAACCTATCTCACATCCGAAG
CAGCAGGTGAAGGACGGCGACTTGACGGCCGGCGTAGGCACGGCACTTGA
AGgtaagaaagggatggaggtaggtggggagggagggcgggctcatgcaa
cagcctcagcctcttaattttagtccttccagcccgccgctcattggaaa
cagcatgatctcctgttgtagtgcagcacgctgcttgtcctcagaagagg
gatttgcctttcaggctaatggccagcatccaccttgtgttttcctcgag
gaggtgccttccctccttccctccttcctttcccattccctctcccttct
tccaggcgctactgcccttatcgacccaggccataaatggagagaggggg
aggggaaagcgtctaattatcctccttccttccgacgacctgcttatctc
tccgtctttctcaccatcacccactctccttccctccctccaggcgccac
ggccctcatcgaccaaggctatcctcaccctgtcatggcattctctcatc
tttctctctccgtcactgctcacccgatacactacagGTCACTCCCAATC
TCCCAAATCCCTGATAAAAATGAAGGAGACCATCCACTACGCGACTCTCT
GGGCCCTGCCGGCTATCGTGGCAAGCTTGCTCCTGCTAAACTTTATGGAC
ATGGCATTGATGGGAGTGCATAGCCTGGCCGTCCATACTCGCTCGTTACC
AGGTCACGACCTCGCGGTGCGGCTCAATAATCTACTGGAAAAGCTTTTGG
GCGGTAAACAAATCCCGTTCACCATAACAAGTGTTATTCTAGGCGCGGTC
CTTGTGGCCATGATTTCGTGCAGCATCAGCCTTAATCGATTGGTCATTCT
CAAATCGGAGGAGGTGGAGTTGTTGCGCGAAGAGGGGCTGAAGCGTAAGT
GA
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protein sequence of NO19G01840.1

>NO19G01840.1-protein ID=NO19G01840.1-protein|Name=NO19G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MKEKEEEEEEEEEEEEGQPCDSKQPRSLIGDGAEHHSFQSPPQPISHPKQ
QVKDGDLTAGVGTALEGHSQSPKSLIKMKETIHYATLWALPAIVASLLLL
NFMDMALMGVHSLAVHTRSLPGHDLAVRLNNLLEKLLGGKQIPFTITSVI
LGAVLVAMISCSISLNRLVILKSEEVELLREEGLKRK*
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Synonyms
Publications