NO19G01700, NO19G01700 (gene) Nannochloropsis oceanica

Overview
NameNO19G01700
Unique NameNO19G01700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3488
Alignment locationchr19:512224..515711 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:512224..515711 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO19G01700 vs. NCBI_GenBank
Match: EWM23690.1 (hypothetical protein Naga_100030g40 [Nannochloropsis gaditana])

HSP 1 Score: 362.5 bits (929), Expect = 3.700e-96
Identity = 242/596 (40.60%), Postives = 329/596 (55.20%), Query Frame = 0 
Query:  272 TRQSLMGPYLQLFQFYADHVDNHMPTGQEKYMTKFEQWRTFILNQLSSLNKPSSALAPLTPKQEEAITKAIHFVQKWNEQYYKAVNKVQXXXXXXXXXXXXXXXXXAARPLSLQGETSSKADFERELELMQRGLSHQPYLAFHRHEG---PAAAASAAPGVGDMQQRQYEHQLGGYMQARSPWEMLQAKVETLLREGRDSKRLAVLKSVPALLADALDDRGLPREGFPYPASSSLYSSRTESTADLLKRLRLTFNAALAGLAQSKVEEQHQGG----EKGDSSSSSGAPIGNGFVEACGLLRQVDVLLQDLRDRQEAEESGESPRQXXXXXXXXXXXXVVGRGTQTRTSEAWKDEEG-RKGGGKGDPQAIQLYLNALEEVSSASGHPSLSSFSSSPTPPSRLLFFACVDPNARWLEALASPAAGIRNVDALRSALEDCAHLKGIVLAGTKGPNGKLIAKCGGVKGEMWKAEVHLKTRLTLAERARAPAAAAAMGATLFPLLVRVTLVGNKNSAWSERVDEEIQAALLQWREWTKDDVVKTVAAVLEEIRIRVRPGARCDLTGRALKLDGASLEPVPPYTPCTSSSCGSGVAYQLQL 860
            TR  L+GPY  LF+FY +HVD +MP+ ++  + K EQW+ FI NQ+++L   SSA   LT KQEEAI KAI FV +W+EQY KA   VQ                 +AR  ++   T  K D E EL ++++G S   Y+      G            G    Q+   +  +   + +R  W++LQAKV+T++REGR++KRL VL+++P L+  AL  RGLP +    P  S+  S R ES   +L RLR T+NAALA LA      +H GG               P+G GF++A  LL+ VDV+LQ+LR  Q+                       +G    T  S+ W+   G  +G G+GDPQA+  +LNAL+   S  G  SL+         S  L    + P   WLE L SPA GIR V A+   L   +H K    + +   N          K   W+AE+ L  RLT AER R  +A AA   TLFPLLV V+  GN+ S+WS R+++E++AALL+WR+WT+DD V+T+AAVLEE+R+RV+ GARCDLTGR LK+DGAS EPVPPYT   S   GSG+AY++ L
Sbjct:  105 TRAVLLGPYADLFRFYLEHVDKYMPSARQDNVLKLEQWKQFISNQVAALELSSSANTLLTSKQEEAIKKAILFVHRWHEQYQKA---VQAKVVRMSAANAVQDVQASARQPTI--STVFKTDLETELAMLEQGFSQCSYMNISEGAGVKTEELQERLLLGNAVAQRLSDDAAMAPRVHSRLSWDVLQAKVQTMVREGRETKRLNVLRAIPDLVTAALKKRGLPSDPAATPVLST-PSKRPESLDGVLTRLRTTYNAALACLA------EHGGGXXXXXXXXXXXXXXKPVGVGFMKALELLKSVDVMLQELRRHQK-----------------------MGVAADTGRSDPWQPGRGTARGPGEGDPQALDQFLNALQ---SREGGVSLN---------SPRLMIETLKPGEAWLEDLRSPATGIRAVTAVEEVLRASSHFKDFAFSSSSHHN----TISATFKKGQWEAEILLAERLTRAERDR--SAGAATEGTLFPLLVWVSAAGNRASSWSGRLEQEVRAALLRWRDWTQDDPVQTIAAVLEELRLRVQHGARCDLTGRMLKVDGASFEPVPPYT--LSGGTGSGLAYRMCL 645
The following BLAST results are available for this feature:
BLAST of NO19G01700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23690.13.700e-9640.60hypothetical protein Naga_100030g40 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004511NSK004511Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01700.2NO19G01700.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO19G01700.1NO19G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632345gene_7570Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100030g40gene6783Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01700.2NO19G01700.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO19G01700.1NO19G01700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01700 ID=NO19G01700|Name=NO19G01700|organism=Nannochloropsis oceanica|type=gene|length=3488bp
TGTCATGATACTTCTTGTATCTGTGCGTATGTGTGTGTCATATGGAGCGT
TGTGCGCGTGTAACAGGGATGGGAGGGAGAGAGGGAGGAGGTCTCACCGA
GGGTCGCACGATGATGATATGCGGGCCGTTTTTTGATACTTCAAAATTCT
TTGTGTGCGCACAAGCCCACACGTATTCTCTACATACATCCCGCCGCGAC
AGTCATCACCCAGGGACGGAGATCATCACAACATAAGCTAGCTAGCGAGT
ACGGAACAGTACAAGGGGCCGCCGGGGTCAGTGAAAGGCGTCCAAGGCAC
CGACCAGGGATTGAGGGTCGGAGGGTGGCGCCGAGCAAGGACTCTTCAGG
GCGGCCCCTTTGCTACCGCTAGTATGGACTGGCGCAAGCAATATGACGCG
GACGCCCAGAATAAAGTGCGAATGGCGGCGTTGAACCGCATgtaagtgga
atgttagtcaccaatacgtaggatttacatcggcgggctgcttccgtgac
cacaatcaccttctgcgcgccactaacgccccctatcctactcgcaaccg
ttcacatagTTTCGCTCTCGTGAAGCAGTTTGACAGGAAGATGGACGCTA
CGCAGCAAGGAAAGTTGTGCCAGACGACGGAGCAGTCGTTGTGGATGAAG
GCCAAGAGCATGgtacgtttgtgtgcagatgggtgcggtgtgggtctggc
tggggctgggtatcagctgcatggaaatgggctgacaaaacaatgttaag
cagatcgacagaagaatttcaatcgctcaacatcattattccttttttcg
ttctccctcacgtatcttactatgctcatagGAGGACTACCAAAAGAAGA
TCGACCTAAAGTGCAGCAAGCTCCAGGCTGCTAGCGCCGCTGCCGCCTCT
CCAAGTGCGCCGGCTCACCACCCACAGCAGCAGCAGCAGCAGCAGGAGGA
GGCATACCAGCAGCAGGCTCCGCCACAACAAGCCACGTACGCTACATTGG
CCATGCCGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAC
TTGTATCGACAGCACCAGCAATATCAAGCCCACACCCACGCACAAGCCCC
CTTTATCGTGCCGCATCAGCACCAGCAGCAGCAGAATCAATACCAGCACC
AGCAGCACCTTCCCTCACCATCACATGCGCCAGCATTAAAGCGGAAGCTC
GGCGAGATACCGGGAGAAGGAGGAGTAGAGAGAGATATAGCTGTGGGCAG
TGTCATTTCTGCTCCACACGCCCGCTACTCATCCTCCTCCTCCTCCGCCT
CCTCCGCCTCCTCCTCCTGCTCGATACCGACTCAAGCGCATACATACCAT
GGACAAATGCATCCAAGCAGCGGGTTAGGATTACCGGAAATGAAACGGGC
CAAGAGAGACGAGACGAGCCCCAAGCTGCCTCCTGCATCTACGTTGCGCT
TGCCGCCAGGATCGACTGCCCCGTTCGCGTTGCAGCAGGAGCGACGATAC
CCTCAACAGCAACAGCAGCAGCAGCAACAGCAATATCTCCGCCAGCAGCA
GCAGCTCCAGCAGCCAGTCCAAACGCGGCAGTCTCTCATGGGACCATATC
TTCAGTTGTTTCAATTTTATGCGGATCACGTGGATAACCACATGCCCACA
GGACAAGAGAAGTACATGACAAAGTTCGAGCAGgtgcgtgccttcctctc
cctccgtccgccatcctccccctctccctcccccgtacagacgaatttca
tcacgaagcacttcggccgtttcaacaagccgccatctcacccgaccctt
ccatccatcccttcctccctcgatccccgcagTGGAGAACCTTTATTCTC
AACCAACTTTCGTCCCTGAACAAGCCCTCCTCTGCCCTAGCCCCCCTCAC
CCCCAAGCAAGAAGAGGCCATCACCAAGGCAATCCACTTCGTTCAAAAAT
GGAACGAACAATACTACAAAGCAGTCAACAAGGTACAAACTGCTGCTGCT
ACTGCGGCGGCGGCTGCTGCTACTGCTGCTGACCAGGGAGCGGCACGACC
CCTCTCTCTGCAGGGAGAGACATCATCCAAGGCTGATTTCGAGAGAGAGT
TAGAGCTGATGCAAAGAGGACTATCGCATCAGCCTTACCTTGCTTTTCAT
CGTCATGAGGGACCTGCAGCTGCTGCTTCTGCTGCTCCTGGAGTAGGGGA
CATGCAACAGCGCCAGTATGAGCACCAGCTTGGAGGATATATGCAAGCAC
GTTCTCCCTGGGAGATGTTACAAGCCAAGGTGGAGACATTGTTGAGGGAA
GGAAGGGACTCGAAGCGCCTGGCCGTGCTCAAGTCAGTGCCAGCCCTCCT
GGCCGATGCACTGGACGATCGTGGGCTACCGCGGGAGGGGTTTCCCTATC
CCGCTTCTTCGTCCTTATACTCATCGCGGACGGAGAGCACGGCCGATCTG
TTGAAGAGGTTGCGTTTGACTTTCAATGCGGCTCTGGCAGGGTTGGCGCA
GAGCAAGGTGGAGGAGCAGCACCAAGGCGGTGAAAAGGGCGATAGCAGTA
GCAGCAGTGGTGCACCGATCGGAAATGGCTTTGTCGAAGCGTGTGGGCTT
CTAAGGCAGGTGGACGTACTCCTTCAGGACCTCCGAGACCGCCAAGAGGC
GGAGGAATCGGGGGAGTCCCCTAGACAAAGGTATCATCAGCAGCAGCAGC
GACGCCAAGCAGCAGTTGTAGGGCGAGGGACACAAACGCGTACTTCAGAG
GCATGGAAAGATGAAGAGGGGAGGAAAGGGGGGGGGAAGGGCGATCCGCA
GGCCATCCAACTATACCTCAACGCTCTAGAAGAGGTATCTTCGGCCTCGG
GTCACCCCTCCTTGTCCTCCTTCTCTTCCTCCCCAACTCCTCCCTCCCGA
CTTCTTTTTTTCGCCTGTGTGGACCCGAACGCAAGGTGGCTGGAAGCGCT
CGCTTCCCCAGCAGCAGGCATCCGGAATGTAGACGCCCTTCGCTCTGCTC
TCGAGGATTGTGCACATTTGAAAGGCATTGTTCTCGCGGGGACCAAAGGG
CCGAACGGCAAGTTAATCGCCAAATGCGGGGGGGTGAAAGGAGAGATGTG
GAAAGCGGAAGTGCACTTGAAGACAAGACTGACCTTGGCGGAACGAGCGA
GGGCACCTGCAGCGGCCGCAGCGATGGGCGCGACATTGTTTCCGCTGTTG
GTACGTGTAACGTTAGTTGGAAATAAGAATAGTGCATGGAGTGAACGCGT
GGATGAGGAGATACAGGCGGCGCTGCTGCAATGGAGGGAATGGACGAAAG
ATGATGTGGTAAAGACCGTCGCTGCTGTGCTGGAAGAAATACGCATACGT
GTCCGACCTGGCGCGAGATGCGACCTGACGGGCCGCGCACTGAAGCTGGA
TGGTGCTTCACTCGAGCCGGTGCCGCCCTATACGCCATGCACCAGTAGCA
GCTGTGGGAGTGGGGTGGCGTATCAGTTGCAGCTGTAA
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protein sequence of NO19G01700.2

>NO19G01700.2-protein ID=NO19G01700.2-protein|Name=NO19G01700.2|organism=Nannochloropsis oceanica|type=polypeptide|length=893bp
MDWRKQYDADAQNKVRMAALNRIFALVKQFDRKMDATQQGKLCQTTEQSL
WMKAKSMEDYQKKIDLKCSKLQAASAAAASPSAPAHHPQQQQQQQEEAYQ
QQAPPQQATYATLAMPRQQQQQQQQQQQQHLYRQHQQYQAHTHAQAPFIV
PHQHQQQQNQYQHQQHLPSPSHAPALKRKLGEIPGEGGVERDIAVGSVIS
APHARYSSSSSSASSASSSCSIPTQAHTYHGQMHPSSGLGLPEMKRAKRD
ETSPKLPPASTLRLPPGSTAPFALQQERRYPQQQQQQQQQQYLRQQQQLQ
QPVQTRQSLMGPYLQLFQFYADHVDNHMPTGQEKYMTKFEQWRTFILNQL
SSLNKPSSALAPLTPKQEEAITKAIHFVQKWNEQYYKAVNKVQTAAATAA
AAAATAADQGAARPLSLQGETSSKADFERELELMQRGLSHQPYLAFHRHE
GPAAAASAAPGVGDMQQRQYEHQLGGYMQARSPWEMLQAKVETLLREGRD
SKRLAVLKSVPALLADALDDRGLPREGFPYPASSSLYSSRTESTADLLKR
LRLTFNAALAGLAQSKVEEQHQGGEKGDSSSSSGAPIGNGFVEACGLLRQ
VDVLLQDLRDRQEAEESGESPRQRYHQQQQRRQAAVVGRGTQTRTSEAWK
DEEGRKGGGKGDPQAIQLYLNALEEVSSASGHPSLSSFSSSPTPPSRLLF
FACVDPNARWLEALASPAAGIRNVDALRSALEDCAHLKGIVLAGTKGPNG
KLIAKCGGVKGEMWKAEVHLKTRLTLAERARAPAAAAAMGATLFPLLVRV
TLVGNKNSAWSERVDEEIQAALLQWREWTKDDVVKTVAAVLEEIRIRVRP
GARCDLTGRALKLDGASLEPVPPYTPCTSSSCGSGVAYQLQL*
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protein sequence of NO19G01700.1

>NO19G01700.1-protein ID=NO19G01700.1-protein|Name=NO19G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=860bp
MDATQQGKLCQTTEQSLWMKAKSMEDYQKKIDLKCSKLQAASAAAASPSA
PAHHPQQQQQQQEEAYQQQAPPQQATYATLAMPRQQQQQQQQQQQQHLYR
QHQQYQAHTHAQAPFIVPHQHQQQQNQYQHQQHLPSPSHAPALKRKLGEI
PGEGGVERDIAVGSVISAPHARYSSSSSSASSASSSCSIPTQAHTYHGQM
HPSSGLGLPEMKRAKRDETSPKLPPASTLRLPPGSTAPFALQQERRYPQQ
QQQQQQQQYLRQQQQLQQPVQTRQSLMGPYLQLFQFYADHVDNHMPTGQE
KYMTKFEQWRTFILNQLSSLNKPSSALAPLTPKQEEAITKAIHFVQKWNE
QYYKAVNKVQTAAATAAAAAATAADQGAARPLSLQGETSSKADFERELEL
MQRGLSHQPYLAFHRHEGPAAAASAAPGVGDMQQRQYEHQLGGYMQARSP
WEMLQAKVETLLREGRDSKRLAVLKSVPALLADALDDRGLPREGFPYPAS
SSLYSSRTESTADLLKRLRLTFNAALAGLAQSKVEEQHQGGEKGDSSSSS
GAPIGNGFVEACGLLRQVDVLLQDLRDRQEAEESGESPRQRYHQQQQRRQ
AAVVGRGTQTRTSEAWKDEEGRKGGGKGDPQAIQLYLNALEEVSSASGHP
SLSSFSSSPTPPSRLLFFACVDPNARWLEALASPAAGIRNVDALRSALED
CAHLKGIVLAGTKGPNGKLIAKCGGVKGEMWKAEVHLKTRLTLAERARAP
AAAAAMGATLFPLLVRVTLVGNKNSAWSERVDEEIQAALLQWREWTKDDV
VKTVAAVLEEIRIRVRPGARCDLTGRALKLDGASLEPVPPYTPCTSSSCG
SGVAYQLQL*
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Synonyms
Publications