NO19G01570, NO19G01570 (gene) Nannochloropsis oceanica

Overview
NameNO19G01570
Unique NameNO19G01570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1433
Alignment locationchr19:472988..474420 -

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein s21
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:472988..474420 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR001911Ribosomal_S21
Homology
BLAST of NO19G01570 vs. NCBI_GenBank
Match: EWM23651.1 (ribosomal protein s21 [Nannochloropsis gaditana])

HSP 1 Score: 193.4 bits (490), Expect = 6.300e-46
Identity = 105/122 (86.07%), Postives = 110/122 (90.16%), Query Frame = 0
Query:   60 MFKQLVCLVVGTLAVGSQAFMAPSPLFKASSSAAARVYQPITTETGLRTPVSADVVVSVGDGENIDNAVKRFKREVNKSGHLLDLRFKRYHESNQEKVKRKAVQARRKARMLRLSLRKGQKL 182
            MFK+LVCL VGTLAVGSQAFM   P+ K SSSAAARVYQP  +ETGLR PVS DV+VSVGDGENIDNAVKRFKREVNKSGHLLDLRF RYHE+NQEK KRKAVQARRKARMLRLSLRKGQKL
Sbjct:    1 MFKKLVCLAVGTLAVGSQAFMPSLPMVKISSSAAARVYQPAQSETGLRVPVSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARMLRLSLRKGQKL 122          
BLAST of NO19G01570 vs. NCBI_GenBank
Match: XP_002286470.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED96111.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 73.2 bits (178), Expect = 9.500e-10
Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 0
Query:  116 VSVGDGENIDNAVKRFKREVNKSGHLLDLRFKRYHESNQEKVKRKAVQARRKARMLRLSLRK 178
            V+VG+GE I++A++RFKREVNKSGHL+DLR KRY E++Q++ KRK VQAR + R+ R+  R+
Sbjct:    2 VAVGEGEPIESALRRFKREVNKSGHLMDLRHKRYFENSQDRKKRKIVQARIRKRLERMQARR 63          
BLAST of NO19G01570 vs. NCBI_GenBank
Match: GAX14679.1 (hypothetical protein FisN_11Hh219 [Fistulifera solaris])

HSP 1 Score: 71.6 bits (174), Expect = 2.800e-9
Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 0
Query:   67 LVVGTLAVGSQAFMAPSPLFKASSSAAARVYQPITTETGLRTPVSADVVVSVGDGENIDNAVKRFKREVNKSGHLLDLRFKRYHESNQEKVKRKAVQARRKARMLRLSLRK 178
            +++  LA  S AF AP+P F         V +P        T +S  + + VGDGE I++A++RFKREV+KSGHL++LR KRY E++QE+ KRK  +AR + +  R+  R+
Sbjct:    9 VLLAALATFSNAF-APAPAFGC-------VTRP-------ETAMSVKIKIEVGDGEPIESAIRRFKREVSKSGHLIELRHKRYFENSQERAKRKVKEARMRKKFERMQKRR 104          
BLAST of NO19G01570 vs. NCBI_GenBank
Match: XP_002177375.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51838.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 70.1 bits (170), Expect = 8.100e-9
Identity = 34/53 (64.15%), Postives = 46/53 (86.79%), Query Frame = 0
Query:  108 TPVSADVVVSVGDGENIDNAVKRFKREVNKSGHLLDLRFKRYHESNQEKVKRK 161
            T +S  V V+VGDGE I++A++RFKREVNKSGHL++LR KRY E++QE++KRK
Sbjct:    5 TELSVKVKVAVGDGEPIESALRRFKREVNKSGHLMELRHKRYFENSQERIKRK 57          
BLAST of NO19G01570 vs. NCBI_GenBank
Match: GAX09807.1 (hypothetical protein FisN_11Lh219 [Fistulifera solaris])

HSP 1 Score: 70.1 bits (170), Expect = 8.100e-9
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 0
Query:   67 LVVGTLAVGSQAFMAPSPLFKASSSAAARVYQPITTETGLRTPVSADVVVSVGDGENIDNAVKRFKREVNKSGHLLDLRFKRYHESNQEKVKRKAVQARRKARMLRLSLRK 178
            +++  LA  S AF AP+P F         V +P   ET L  PV   +V  VGDGE I++A++RFKREV+KSGHL++LR KRY E++QE+ KRK  +AR + +  R+  R+
Sbjct:    9 VLLAALATISNAF-APAPAFGC-------VTRP---ETAL--PVKIKIV--VGDGEPIESAIRRFKREVSKSGHLIELRHKRYFENSQERAKRKVKEARMRKKFERMQKRR 104          
BLAST of NO19G01570 vs. NCBI_GenBank
Match: XP_005716728.1 (unnamed protein product [Chondrus crispus] >CDF36909.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 67.0 bits (162), Expect = 6.800e-8
Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 0
Query:  113 DVVVSVGDGENIDNAVKRFKREVNKSGHLLDLRFKRYHESNQEKVKRKAVQARRKARMLRLSLR 177
            DV V VGD E +++A++RFK++V+KSGHL +LR +RY E+N EK  RKA  ARRKA++ R + R
Sbjct:    2 DVTVIVGDNEPVESAIRRFKKDVSKSGHLFELRRRRYFETNTEKRIRKAAAARRKAKIARRTAR 65          
The following BLAST results are available for this feature:
BLAST of NO19G01570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM23651.16.300e-4686.07ribosomal protein s21 [Nannochloropsis gaditana][more]
XP_002286470.19.500e-1059.68predicted protein, partial [Thalassiosira pseudona... [more]
GAX14679.12.800e-941.44hypothetical protein FisN_11Hh219 [Fistulifera sol... [more]
XP_002177375.18.100e-964.15predicted protein, partial [Phaeodactylum tricornu... [more]
GAX09807.18.100e-945.05hypothetical protein FisN_11Lh219 [Fistulifera sol... [more]
XP_005716728.16.800e-854.69unnamed protein product [Chondrus crispus] >CDF369... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004494NSK004494Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01570.1NO19G01570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599153gene_7555Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01570.1NO19G01570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01570 ID=NO19G01570|Name=NO19G01570|organism=Nannochloropsis oceanica|type=gene|length=1433bp
CTCTGGCGAGGCCGTCACTGGCAGAAGAACGGCTGCGCGAGTGGAGATGT
GTGGATGAGCTGGACTCGAGCTGGCTCGACCTATCCTTGTCCATCAGGAC
TTGCCACTCCCTAATATGCCCTGCTCTTGGCAACGTGATGGCTGTGGTGT
ATTGGAGAGGATGGATGGCTTTGGAGTCAAAGCCCAGGGCCCTCCTAGCC
GTCCTCCCACTCTTGCTCTCTCACCGCTATCCTTGTCTTGTTGCACATCC
CCTTTCACTGACACTTTCCCCTCCCCTCCTACCCATTTCCCCTTTAAATG
TAGGGTTCGCCATCATGTTCAAGCAGTTGGTGTGCCTAGTGGTTGGCACT
TTGGCCGTGGGCTCGCAGGCTTTCATGGCCCCCTCCCCGTTGTTCAAGGC
GAGCTCCTCTGCCGCGGCCCGCGTCTACCAGCCCATCACGACCGAGACCG
gtacgtctcggtgcatgagcatgcatgcttttggatagtataggggaaga
atagtagagaaactgtgacatagcggatgggttgtgtgtctgcactaacg
cggtcgggtgggatggacaggcgaagagcatagtctgtgttgggcgacac
aaggactggcaatggctcacttataccatccaccaaacagGTCTGCGCAC
GCCTGTGTCTGCTGATGTGGTGGTGTCTGTCGGGGATGGCGAGAAgtaag
tctgcgcacggaggtgtgaggtggtggggaaagggaaaagatgagggtag
gagagagggttgaccacgagtgctgaagaagatggaggaggaggacttcg
atgagggaagtggctcacagatcctaatcgattggcttctgagtatcttg
ggattatggatgcctgttcctaggtatactagatccgccaatcttacccc
tccctccctccctctccctccctcctgttctcctcccaacagCATCGACA
ACGCCGTCAAGCGTTTCAAACGCGAGGTGAACAAATCCGGGCACTTGCTG
GACCTGCGATTTAAGCGTTATCACGAGAGCAACCAGGAGAAGGTGAAGCG
TAAGGCTGTCCAAGCCCGTCGCAAGGCCCGCATGCTTCGCTTGTCTCTCC
GCAAGGGGCAGAAGCTCTAAACGAGGAAGCGAGCGAGGGCGGGAGGGAGG
GAGTGAAGGGAGGGAGATATACATACAGCCACTATGCTGCGTAGATGCAG
CTGAGCAAGGATCATCTAATTGAGGCCAGCTCTTCGTCTCCTCATGCTTC
ACATGAGGGGAAGGGAGAAGGGAGGGGGGCAGGCAGGGGTCAGGCCATGT
GTGCTGAGAGTTGGCGCTTGTGGATGAGAGCACACATTCACAAAGAAGTC
GAATGCCGCTGCTGCGCTGTCAACGACTGGGAAGAAGATTAAAGAAGACA
AGAGGAAACCAAAAATGATATCGAAGAGAGAAG
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protein sequence of NO19G01570.1

>NO19G01570.1-protein ID=NO19G01570.1-protein|Name=NO19G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MAVVYWRGWMALESKPRALLAVLPLLLSHRYPCLVAHPLSLTLSPPLLPI
SPLNVGFAIMFKQLVCLVVGTLAVGSQAFMAPSPLFKASSSAAARVYQPI
TTETGLRTPVSADVVVSVGDGENIDNAVKRFKREVNKSGHLLDLRFKRYH
ESNQEKVKRKAVQARRKARMLRLSLRKGQKL*
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Synonyms
Publications