NO19G01570, NO19G01570 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO19G01570 vs. NCBI_GenBank
Match: EWM23651.1 (ribosomal protein s21 [Nannochloropsis gaditana]) HSP 1 Score: 193.4 bits (490), Expect = 6.300e-46 Identity = 105/122 (86.07%), Postives = 110/122 (90.16%), Query Frame = 0 Query: 60 MFKQLVCLVVGTLAVGSQAFMAPSPLFKASSSAAARVYQPITTETGLRTPVSADVVVSVGDGENIDNAVKRFKREVNKSGHLLDLRFKRYHESNQEKVKRKAVQARRKARMLRLSLRKGQKL 182 MFK+LVCL VGTLAVGSQAFM P+ K SSSAAARVYQP +ETGLR PVS DV+VSVGDGENIDNAVKRFKREVNKSGHLLDLRF RYHE+NQEK KRKAVQARRKARMLRLSLRKGQKL Sbjct: 1 MFKKLVCLAVGTLAVGSQAFMPSLPMVKISSSAAARVYQPAQSETGLRVPVSTDVMVSVGDGENIDNAVKRFKREVNKSGHLLDLRFHRYHETNQEKAKRKAVQARRKARMLRLSLRKGQKL 122
BLAST of NO19G01570 vs. NCBI_GenBank
Match: XP_002286470.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED96111.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 73.2 bits (178), Expect = 9.500e-10 Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 0 Query: 116 VSVGDGENIDNAVKRFKREVNKSGHLLDLRFKRYHESNQEKVKRKAVQARRKARMLRLSLRK 178 V+VG+GE I++A++RFKREVNKSGHL+DLR KRY E++Q++ KRK VQAR + R+ R+ R+ Sbjct: 2 VAVGEGEPIESALRRFKREVNKSGHLMDLRHKRYFENSQDRKKRKIVQARIRKRLERMQARR 63
BLAST of NO19G01570 vs. NCBI_GenBank
Match: GAX14679.1 (hypothetical protein FisN_11Hh219 [Fistulifera solaris]) HSP 1 Score: 71.6 bits (174), Expect = 2.800e-9 Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 0 Query: 67 LVVGTLAVGSQAFMAPSPLFKASSSAAARVYQPITTETGLRTPVSADVVVSVGDGENIDNAVKRFKREVNKSGHLLDLRFKRYHESNQEKVKRKAVQARRKARMLRLSLRK 178 +++ LA S AF AP+P F V +P T +S + + VGDGE I++A++RFKREV+KSGHL++LR KRY E++QE+ KRK +AR + + R+ R+ Sbjct: 9 VLLAALATFSNAF-APAPAFGC-------VTRP-------ETAMSVKIKIEVGDGEPIESAIRRFKREVSKSGHLIELRHKRYFENSQERAKRKVKEARMRKKFERMQKRR 104
BLAST of NO19G01570 vs. NCBI_GenBank
Match: XP_002177375.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC51838.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 70.1 bits (170), Expect = 8.100e-9 Identity = 34/53 (64.15%), Postives = 46/53 (86.79%), Query Frame = 0 Query: 108 TPVSADVVVSVGDGENIDNAVKRFKREVNKSGHLLDLRFKRYHESNQEKVKRK 161 T +S V V+VGDGE I++A++RFKREVNKSGHL++LR KRY E++QE++KRK Sbjct: 5 TELSVKVKVAVGDGEPIESALRRFKREVNKSGHLMELRHKRYFENSQERIKRK 57
BLAST of NO19G01570 vs. NCBI_GenBank
Match: GAX09807.1 (hypothetical protein FisN_11Lh219 [Fistulifera solaris]) HSP 1 Score: 70.1 bits (170), Expect = 8.100e-9 Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 0 Query: 67 LVVGTLAVGSQAFMAPSPLFKASSSAAARVYQPITTETGLRTPVSADVVVSVGDGENIDNAVKRFKREVNKSGHLLDLRFKRYHESNQEKVKRKAVQARRKARMLRLSLRK 178 +++ LA S AF AP+P F V +P ET L PV +V VGDGE I++A++RFKREV+KSGHL++LR KRY E++QE+ KRK +AR + + R+ R+ Sbjct: 9 VLLAALATISNAF-APAPAFGC-------VTRP---ETAL--PVKIKIV--VGDGEPIESAIRRFKREVSKSGHLIELRHKRYFENSQERAKRKVKEARMRKKFERMQKRR 104
BLAST of NO19G01570 vs. NCBI_GenBank
Match: XP_005716728.1 (unnamed protein product [Chondrus crispus] >CDF36909.1 unnamed protein product [Chondrus crispus]) HSP 1 Score: 67.0 bits (162), Expect = 6.800e-8 Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 0 Query: 113 DVVVSVGDGENIDNAVKRFKREVNKSGHLLDLRFKRYHESNQEKVKRKAVQARRKARMLRLSLR 177 DV V VGD E +++A++RFK++V+KSGHL +LR +RY E+N EK RKA ARRKA++ R + R Sbjct: 2 DVTVIVGDNEPVESAIRRFKKDVSKSGHLFELRRRRYFETNTEKRIRKAAAARRKAKIARRTAR 65 The following BLAST results are available for this feature:
BLAST of NO19G01570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO19G01570 ID=NO19G01570|Name=NO19G01570|organism=Nannochloropsis oceanica|type=gene|length=1433bpback to top protein sequence of NO19G01570.1 >NO19G01570.1-protein ID=NO19G01570.1-protein|Name=NO19G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bpback to top Synonyms
Publications
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