NO19G01560, NO19G01560 (gene) Nannochloropsis oceanica

Overview
NameNO19G01560
Unique NameNO19G01560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1317
Alignment locationchr19:471465..472781 +

Link to JBrowse

Properties
Property NameValue
DescriptionA1 cistron-splicing factor, AAR2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:471465..472781 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007946AAR2
Homology
BLAST of NO19G01560 vs. NCBI_GenBank
Match: EWM23650.1 (A1 cistron-splicing factor, AAR2 [Nannochloropsis gaditana])

HSP 1 Score: 386.7 bits (992), Expect = 9.400e-104
Identity = 222/445 (49.89%), Postives = 274/445 (61.57%), Query Frame = 0
Query:    1 MPSGSEFGIDMQINQVGPNFRGVAGVPLGLHFLTFGTGQGLRQGFFVHISRPYEVLVKSWDPTEEELIEQGTGLREGSMHNLLQALQRGELNKQLGAYPEREQGRLWRDLSEYITEDVLALCGLKVETRILPGAWEEEKIHARGEEEKREGGELVPFFPGLGHAATFTDVRGAKRPKNALDMTPAEVTRYHLDRSQLLEEVLRDVYSKIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXSAWKALLGEYQLAFLLFLNLYSMAGLKHWKETTALLCHASLSPSLPQYFPLYHAFLHVFSAQSSAMPSDFFFNDEEGEMVKGKESFLQPCLXXXXXXXXXXXXXXXXXXSGLLEEVELFARKMEARFLGFNLKARRE---GARKXXXXXXXXXXXXPLVVPWEEVERAMLRTTMTEDW--------EEEEREEIGKNRVLETIQEQE 435
            MP G EFGIDMQINQVGPNFRGVAGVP+G+H LTFGTG+GLRQGFF++I+RPYEV+VKSW+  +EELIE+GTGL EGSM +LL AL+RGELNK LGAYP+  QG LWR L++Y+T DVL++CGL +ETRILPG WEEE + +RG  E  E GE+V   PG G AA FTD+    R ++  DMTP  +TRYH+DRS+LL+++LRDVYSK+                             SAW  LLGE+QLAFLLFLNL+SMAGL+HWKE+TALLC   +S +LP++ PLY AFL +   Q    PSDFF N++E     GK SFL P L                    +L     FA  ME  F G  L+ + +   G               P V+PWEE ER M   T  E+         E   RE+      LET+ E+E
Sbjct:   19 MPPGFEFGIDMQINQVGPNFRGVAGVPIGIHLLTFGTGKGLRQGFFINITRPYEVIVKSWNALDEELIEEGTGLPEGSMRSLLDALKRGELNKHLGAYPDSAQGGLWRQLTKYVTADVLSMCGLALETRILPGDWEEENVRSRGAGE--EAGEVVSLCPGGGRAAVFTDMGVRGRLRDKKDMTPPALTRYHMDRSELLDDMLRDVYSKM-PGSSSTAATAAKKPSPSSLPFPPSSSSPSAWMNLLGEHQLAFLLFLNLFSMAGLRHWKESTALLC--QVSSALPRHLPLYRAFLKLLRVQLQTAPSDFFVNEDE----VGKGSFLGPSL--QSLIRNVREAREDGGGDDILRCARTFAAAMEKDFPGLELERQLDVTGGDIGGGLTEGEEEEEGPQVLPWEEYERVMRGPTAEEEECGASGQVDERRLREQERPVGPLETLGEEE 452          
BLAST of NO19G01560 vs. NCBI_GenBank
Match: POM75829.1 (A1 cistron-splicing factor [Phytophthora palmivora var. palmivora])

HSP 1 Score: 181.4 bits (459), Expect = 6.000e-42
Identity = 111/331 (33.53%), Postives = 173/331 (52.27%), Query Frame = 0
Query:    2 PSGSEFGIDMQINQVGPNFRGVAGVPLGLHFLTFGTGQ---GLRQGFFVHISRPYEVLVKSWDPTEEELIEQGTGLREGSMHNLLQALQRGELNKQLGAYPEREQGRLWRDLSEYITEDVLALCGLKVETRILPGAWEEEKIHARGEEEKREGGELVPFFPGLGHAATFTDVRGAKRPKNALDMTPAEVTRYHLDRSQLLEEVLRDVYSKIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXSAWKALLGEYQLAFLLFLNLYSMAGLKHWKETTALLCHASLSPSLPQYFPLYHAFLHVFSAQSSAMPSDFFFNDEEGEMVKGKESFLQPCL 330
            PS +EFG+D ++ + GP F+GV  +PLG+HF+ F + +   G+RQGFF+H+ R  +V+V+ W   +EEL     GL   ++ NL +A+   +L+  LG YP ++  + W+ LS +I+ +VL  CG++    +LPG    + I       K + G ++P+FP L     FT ++     K   D++    T YH DRS+ LEE++   +                                  WK L+GE QL+FL+FL L S+A L+ WK+  ALLC  S   +L  + PL+ AF+ +F  Q   +P DFF ++         E+FL PCL
Sbjct:   38 PSATEFGVDYEVFRTGPKFQGVKFLPLGIHFVLFRSREQEHGIRQGFFIHVERHAQVIVREWSLEKEELGPPRPGL---NVDNLERAVLSFQLDSGLGPYP-KQHWKTWQRLSNFISAEVLQHCGVEFGAILLPG----DAIEDAATSTKTQDG-VIPYFPDLPRTVRFTALQ-----KTRTDLSAEARTVYHFDRSERLEELIETEFG-------------------------------GKWKELIGELQLSFLVFLQLSSLAALEQWKQFIALLC--SCERALASHVPLFLAFIKLFRTQLEQIPQDFFQDETT------SENFLSPCL 315          
BLAST of NO19G01560 vs. NCBI_GenBank
Match: XP_024574058.1 (mRNA splicing factor [Plasmopara halstedii] >CEG37689.1 mRNA splicing factor [Plasmopara halstedii])

HSP 1 Score: 173.3 bits (438), Expect = 1.600e-39
Identity = 110/332 (33.13%), Postives = 173/332 (52.11%), Query Frame = 0
Query:    1 MPSGSEFGIDMQINQVGPNFRGVAGVPLGLHFLTFGTGQ---GLRQGFFVHISRPYEVLVKSWDPTEEELIEQGTGLREGSMHNLLQALQRGELNKQLGAYPEREQGRLWRDLSEYITEDVLALCGLKVETRILPGAWEEEKIHARGEEEKREGGELVPFFPGLGHAATFTDVRGAKRPKNALDMTPAEVTRYHLDRSQLLEEVLRDVYSKIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXSAWKALLGEYQLAFLLFLNLYSMAGLKHWKETTALLCHASLSPSLPQYFPLYHAFLHVFSAQSSAMPSDFFFNDEEGEMVKGKESFLQPCL 330
            +P  +EFGID ++ + G  F GV  +PLG+HF+ F + +   G+RQGFFV+I R  +V+V+ W   +EEL   G+  RE ++ NL +A+   +L+  LG YP ++  + W  LS YI+  VL  CG++    +LPG   E+    R   E ++G  ++P+FP       FT ++  ++     D+T    T Y+ DRS+ LEE++ + ++                                 WK ++GE Q+AFL+FL L S A L+ WK+  A++C  S   +L  Y PL+ AF+ +   Q   +P D FF DE        ++FL PCL
Sbjct:  224 VPPATEFGIDYEVFRTGSKFLGVKFLPLGIHFVVFRSREQEHGIRQGFFVNIERHSQVIVREWSVEKEEL---GSPQRELNVENLERAVLTFQLDSGLGPYP-KQHLKTWHRLSNYISASVLQRCGVEFGVILLPGHAVED---VRFSCETQDG--VIPYFPDFPRTVRFTPLQRTRQ-----DLTAEARTTYYFDRSERLEELIEEAFN-------------------------------GDWKEVIGELQVAFLIFLQLSSFAALEQWKQFIAMMC--SCEQALSSYVPLFLAFMKLLMTQLEQIPED-FFQDE-----LSSKNFLSPCL 502          
BLAST of NO19G01560 vs. NCBI_GenBank
Match: ETI48596.1 (hypothetical protein F443_07411 [Phytophthora parasitica P1569] >ETK93928.1 hypothetical protein L915_02961 [Phytophthora parasitica] >ETL47316.1 hypothetical protein L916_02937 [Phytophthora parasitica] >ETM53623.1 hypothetical protein L914_02926 [Phytophthora parasitica] >ETP23876.1 hypothetical protein F441_03069 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 172.9 bits (437), Expect = 2.100e-39
Identity = 124/416 (29.81%), Postives = 196/416 (47.12%), Query Frame = 0
Query:    1 MPSGSEFGIDMQINQVGPNFRGVAGVPLGLHFLTFGTGQ---GLRQGFFVHISRPYEVLVKSWDPTEEELIEQGTGLREGSMHNLLQALQRGELNKQLGAYPEREQGRLWRDLSEYITEDVLALCGLKVETRILPGAWEEEKIHARGEEEKREGGELVPFFPGLGHAATFTDVRGAKRPKNALDMTPAEVTRYHLDRSQLLEEVLRDVYSKIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXSAWKALLGEYQLAFLLFLNLYSMAGLKHWKETTALLCHASLSPSLPQYFPLYHAFLHVFSAQSSAMPSDFFFNDEEGEMVKGKESFLQPCLXXXXXXXXXXXXXXXXXXSGLLEEVELFARKMEARFLGFNLKARREGA-RKXXXXXXXXXXXXPLVVPWEEVERAMLRTTMTED 413
            +P+ +EFG+D ++ + GP F+GV  +PLG+HF+ F + +   G+RQGFF+++ R  +V+V+ W   +EEL     GL   ++ NL +A+   +L+  LG YP ++  + W+ LS +I+  VL  CG++    +LPG    + +       K + G ++P+FP L     FT ++     K   D+     T YH DRSQ +EE++   +                                  WK L+GE QL+FL+FL L S+A L+ WK+  AL+C  S   +L  +  L+ AF+ +F  Q   +P DFF ++         E+FL+PCL                    LLE +E      + R   F+L+                     P+VVP EE+  A   TTM  D
Sbjct:   41 VPAATEFGVDYEVFRTGPKFQGVKFLPLGIHFVLFRSHEQEHGIRQGFFINVERHAQVIVREWSLEKEELGPPRPGL---NVENLERAVLSFQLDSGLGPYP-KQHLKTWQRLSNFISASVLQRCGVEFGAILLPG----DAVEDAATSSKTQDG-VIPYFPDLPRTVRFTVLQ-----KTRTDLVAQARTAYHFDRSQRVEELIETEFG-------------------------------GDWKELIGELQLSFLVFLQLSSLAALEQWKQFIALMC--SCERALSSHVWLFLAFIKLFRTQLEQIPEDFFQDETT------SENFLRPCLL------------------SLLELIEDDDAPSQLRLKAFHLRQLLTSRFHWDSTAELELDEFAPVVVPEEELLDAATATTMQND 385          
BLAST of NO19G01560 vs. NCBI_GenBank
Match: ETM00422.1 (hypothetical protein L917_02863 [Phytophthora parasitica] >ETO82772.1 hypothetical protein F444_03137 [Phytophthora parasitica P1976])

HSP 1 Score: 172.9 bits (437), Expect = 2.100e-39
Identity = 124/416 (29.81%), Postives = 196/416 (47.12%), Query Frame = 0
Query:    1 MPSGSEFGIDMQINQVGPNFRGVAGVPLGLHFLTFGTGQ---GLRQGFFVHISRPYEVLVKSWDPTEEELIEQGTGLREGSMHNLLQALQRGELNKQLGAYPEREQGRLWRDLSEYITEDVLALCGLKVETRILPGAWEEEKIHARGEEEKREGGELVPFFPGLGHAATFTDVRGAKRPKNALDMTPAEVTRYHLDRSQLLEEVLRDVYSKIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXSAWKALLGEYQLAFLLFLNLYSMAGLKHWKETTALLCHASLSPSLPQYFPLYHAFLHVFSAQSSAMPSDFFFNDEEGEMVKGKESFLQPCLXXXXXXXXXXXXXXXXXXSGLLEEVELFARKMEARFLGFNLKARREGA-RKXXXXXXXXXXXXPLVVPWEEVERAMLRTTMTED 413
            +P+ +EFG+D ++ + GP F+GV  +PLG+HF+ F + +   G+RQGFF+++ R  +V+V+ W   +EEL     GL   ++ NL +A+   +L+  LG YP ++  + W+ LS +I+  VL  CG++    +LPG    + +       K + G ++P+FP L     FT ++     K   D+     T YH DRSQ +EE++   +                                  WK L+GE QL+FL+FL L S+A L+ WK+  AL+C  S   +L  +  L+ AF+ +F  Q   +P DFF ++         E+FL+PCL                    LLE +E      + R   F+L+                     P+VVP EE+  A   TTM  D
Sbjct:   41 VPAATEFGVDYEVFRTGPKFQGVKFLPLGIHFVLFRSHEQEHGIRQGFFINVERHAQVIVREWSLEKEELGPPRPGL---NVENLERAVLSFQLDSGLGPYP-KQHLKTWQRLSNFISASVLQRCGVEFGAILLPG----DAVEDAATSSKTQDG-VIPYFPDLPRTVRFTVLQ-----KTRTDLVAQARTAYHFDRSQRVEELIETEFG-------------------------------GDWKELIGELQLSFLVFLQLSSLAALEQWKQFIALMC--SCERALSSHVWLFLAFIKLFRTQLEQIPEDFFQDETT------SENFLRPCLL------------------SLLELIEDDDAPSQLRLKAFHLRQLLASRFHWDSTAELELDEFAPVVVPEEELLDAATATTMQND 385          
BLAST of NO19G01560 vs. NCBI_GenBank
Match: XP_008903979.1 (hypothetical protein PPTG_09945 [Phytophthora parasitica INRA-310] >ETN10886.1 hypothetical protein PPTG_09945 [Phytophthora parasitica INRA-310])

HSP 1 Score: 172.9 bits (437), Expect = 2.100e-39
Identity = 124/416 (29.81%), Postives = 196/416 (47.12%), Query Frame = 0
Query:    1 MPSGSEFGIDMQINQVGPNFRGVAGVPLGLHFLTFGTGQ---GLRQGFFVHISRPYEVLVKSWDPTEEELIEQGTGLREGSMHNLLQALQRGELNKQLGAYPEREQGRLWRDLSEYITEDVLALCGLKVETRILPGAWEEEKIHARGEEEKREGGELVPFFPGLGHAATFTDVRGAKRPKNALDMTPAEVTRYHLDRSQLLEEVLRDVYSKIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXSAWKALLGEYQLAFLLFLNLYSMAGLKHWKETTALLCHASLSPSLPQYFPLYHAFLHVFSAQSSAMPSDFFFNDEEGEMVKGKESFLQPCLXXXXXXXXXXXXXXXXXXSGLLEEVELFARKMEARFLGFNLKARREGA-RKXXXXXXXXXXXXPLVVPWEEVERAMLRTTMTED 413
            +P+ +EFG+D ++ + GP F+GV  +PLG+HF+ F + +   G+RQGFF+++ R  +V+V+ W   +EEL     GL   ++ NL +A+   +L+  LG YP ++  + W+ LS +I+  VL  CG++    +LPG    + +       K + G ++P+FP L     FT ++     K   D+     T YH DRSQ +EE++   +                                  WK L+GE QL+FL+FL L S+A L+ WK+  AL+C  S   +L  +  L+ AF+ +F  Q   +P DFF ++         E+FL+PCL                    LLE +E      + R   F+L+                     P+VVP EE+  A   TTM  D
Sbjct:   41 VPAATEFGVDYEVFRTGPKFQGVKFLPLGIHFVLFRSHEQEHGIRQGFFINVERHAQVIVREWSLEKEELGPPRPGL---NVENLERAVLSFQLDSGLGPYP-KQHLKTWQRLSNFISASVLQRCGVEFGAILLPG----DAVEDAATSSKTQDG-VIPYFPDLPRTVRFTVLQ-----KTRTDLVAQARTAYHFDRSQRVEELIETEFG-------------------------------GDWKELIGELQLSFLVFLQLSSLAALEQWKQFIALMC--SCERALSSHVWLFLAFIKLFRTQLEQIPEDFFQDETT------SENFLRPCLL------------------SLLELIEDDDAPSQLRLKAFHLRQLLASRFHWDSTAELELDEFAPVVVPEEELLDAATATTMQND 385          
BLAST of NO19G01560 vs. NCBI_GenBank
Match: ETP51876.1 (hypothetical protein F442_03057 [Phytophthora parasitica P10297])

HSP 1 Score: 172.2 bits (435), Expect = 3.600e-39
Identity = 124/416 (29.81%), Postives = 195/416 (46.88%), Query Frame = 0
Query:    1 MPSGSEFGIDMQINQVGPNFRGVAGVPLGLHFLTFGTGQ---GLRQGFFVHISRPYEVLVKSWDPTEEELIEQGTGLREGSMHNLLQALQRGELNKQLGAYPEREQGRLWRDLSEYITEDVLALCGLKVETRILPGAWEEEKIHARGEEEKREGGELVPFFPGLGHAATFTDVRGAKRPKNALDMTPAEVTRYHLDRSQLLEEVLRDVYSKIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXSAWKALLGEYQLAFLLFLNLYSMAGLKHWKETTALLCHASLSPSLPQYFPLYHAFLHVFSAQSSAMPSDFFFNDEEGEMVKGKESFLQPCLXXXXXXXXXXXXXXXXXXSGLLEEVELFARKMEARFLGFNLKARREGA-RKXXXXXXXXXXXXPLVVPWEEVERAMLRTTMTED 413
            +P+ +EFG+D ++ + GP F+GV  +PLG+HF+ F + +   G+RQGFF+ + R  +V+V+ W   +EEL     GL   ++ NL +A+   +L+  LG YP ++  + W+ LS +I+  VL  CG++    +LPG    + +       K + G ++P+FP L     FT ++     K   D+     T YH DRSQ +EE++   +                                  WK L+GE QL+FL+FL L S+A L+ WK+  AL+C  S   +L  +  L+ AF+ +F  Q   +P DFF ++         E+FL+PCL                    LLE +E      + R   F+L+                     P+VVP EE+  A   TTM  D
Sbjct:   41 VPAATEFGVDYEVFRTGPKFQGVKFLPLGIHFVLFRSHEQEHGIRQGFFIDVERHAQVIVREWSLEKEELGPPRPGL---NVENLERAVLSFQLDSGLGPYP-KQHLKTWQRLSNFISASVLQRCGVEFGAILLPG----DAVEDAATSSKTQDG-VIPYFPDLPRTVRFTVLQ-----KTRTDLVAQARTAYHFDRSQRVEELIETEFG-------------------------------GDWKELIGELQLSFLVFLQLSSLAALEQWKQFIALMC--SCERALSSHVWLFLAFIKLFRTQLEQIPEDFFQDETT------SENFLRPCLL------------------SLLELIEDDDAPSQLRLKAFHLRQLLASRFHWDSTAELELDEFAPVVVPEEELLDAATATTMQND 385          
BLAST of NO19G01560 vs. NCBI_GenBank
Match: XP_009537834.1 (hypothetical protein PHYSODRAFT_530355 [Phytophthora sojae] >EGZ07070.1 hypothetical protein PHYSODRAFT_530355 [Phytophthora sojae])

HSP 1 Score: 169.9 bits (429), Expect = 1.800e-38
Identity = 109/332 (32.83%), Postives = 172/332 (51.81%), Query Frame = 0
Query:    1 MPSGSEFGIDMQINQVGPNFRGVAGVPLGLHFLTFGTGQ---GLRQGFFVHISRPYEVLVKSWDPTEEELIEQGTGLREGSMHNLLQALQRGELNKQLGAYPEREQGRLWRDLSEYITEDVLALCGLKVETRILPGAWEEEKIHARGEEEKREGGELVPFFPGLGHAATFTDVRGAKRPKNALDMTPAEVTRYHLDRSQLLEEVLRDVYSKIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXSAWKALLGEYQLAFLLFLNLYSMAGLKHWKETTALLCHASLSPSLPQYFPLYHAFLHVFSAQSSAMPSDFFFNDEEGEMVKGKESFLQPCL 330
            +P+ +EFG+D ++ + GP F+GV  +PLG+HF+ F + +   G+RQGFFV++ R  +V+V+ W   +EEL     GL   +  NL +A+   +L+  LG YP ++  + W+ LS +I+  VL  CG++    +LPG   E+   A    + +EG  ++P+FP L     FT ++     K   D++    T YH DR   LEE++   +                                  WK L+GE QL+FL+FL L S+A L+ WK+  ALLC  S   +L  +  L+ AF+ +F  Q   +P DFF ++         E+FL+PCL
Sbjct:   50 VPAATEFGVDYEVFRTGPKFQGVKFLPLGIHFVLFRSREQEHGIRQGFFVNVERHAQVIVREWSIEKEELGPPRPGL---NPENLERAVLSFQLDSGLGPYP-KQHLKTWQRLSNFISPSVLQRCGVEFGAILLPGDAVED---AATSTKTQEG--VIPYFPDLPRTVRFTTLQ-----KTRTDLSAEARTAYHFDRRWRLEELIETDFG-------------------------------GDWKELVGELQLSFLVFLQLSSLAALEQWKQFIALLC--SCERALSTHVALFLAFIKLFRTQLEQIPEDFFQDETT------SENFLRPCL 328          
BLAST of NO19G01560 vs. NCBI_GenBank
Match: KUG01304.1 (AAR2 protein [Phytophthora nicotianae])

HSP 1 Score: 166.8 bits (421), Expect = 1.500e-37
Identity = 106/338 (31.36%), Postives = 173/338 (51.18%), Query Frame = 0
Query:    1 MPSGSEFGIDMQINQVGPNFRGVAGVPLGLHFLTFGTGQ---GLRQGFFVHISRPYEVLVKSWDPTEEELIEQGTGLREGSMHNLLQALQRGELNKQLGAYPEREQGRLWRDLSEYITEDVLAL------CGLKVETRILPGAWEEEKIHARGEEEKREGGELVPFFPGLGHAATFTDVRGAKRPKNALDMTPAEVTRYHLDRSQLLEEVLRDVYSKIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXSAWKALLGEYQLAFLLFLNLYSMAGLKHWKETTALLCHASLSPSLPQYFPLYHAFLHVFSAQSSAMPSDFFFNDEEGEMVKGKESFLQPCL 330
            +P+ +EFG+D ++ + GP F+GV  +PLG+HF+ F + +   G+RQGFF+++ R  +V+V+ W   +EEL     GL   ++ NL +A+   +L+  LG YP ++  + W+ LS +I+  VL +      CG++    +LPG    + +       K + G ++P+FP L     FT ++     K   D+     T YH DRSQ +EE++   +                                  WK L+GE QL+FL+FL L S+A L+ WK+  AL+C  S   +L  +  L+ AF+ +F  Q   +P DFF ++         E+FL+PCL
Sbjct:   41 VPAATEFGVDYEVFRTGPKFQGVKFLPLGIHFVLFRSHEQEHGIRQGFFINVERHAQVIVREWSLEKEELGPPRPGL---NVENLERAVLSFQLDSGLGPYP-KQHLKTWQRLSNFISASVLQVRALLMRCGVEFGAILLPG----DAVEDAATSSKTQDG-VIPYFPDLPRTVRFTVLQ-----KTRTDLVAQARTAYHFDRSQRVEELIETEFG-------------------------------GDWKELIGELQLSFLVFLQLSSLAALEQWKQFIALMC--SCERALSSHVWLFLAFIKLFRTQLEQIPEDFFQDETT------SENFLRPCL 325          
BLAST of NO19G01560 vs. NCBI_GenBank
Match: XP_008862348.1 (hypothetical protein H310_01103, partial [Aphanomyces invadans] >ETW08543.1 hypothetical protein H310_01103, partial [Aphanomyces invadans])

HSP 1 Score: 158.7 bits (400), Expect = 4.200e-35
Identity = 105/315 (33.33%), Postives = 157/315 (49.84%), Query Frame = 0
Query:    1 MPSGSEFGIDMQINQVGPNFRGVAGVPLGLHFLTFGT------GQGLRQGFFVHISRPYEVLVKSWDPTEEELIEQGTGLREGSMHNLLQALQRGELNKQLGAYPEREQGRLWRDLSEYITEDVLALCGLKVETRILPGAWEEEKIHARGEEEKREGGELVPFFPGLGHAATFTDVRGAKRPKNALDMTPAEVTRYHLDRSQLLEEVLRDVYSKIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXSAWKALLGEYQLAFLLFLNLYSMAGLKHWKETTALLCHASLSPSLPQYFPLYHAFLHVFSAQSSAMPSDFF 310
            +P GSEFGID +  +    FRGV  +P GLHF+ + +      G G+RQGFFV I +P +V++++W    EEL+      RE  + NL +A+   +L+  LGAYP++   + W  LS+YIT+D+LA CGL V   I PG  +   +        R    + PFFP +   A FT     +  K       +++TRYH+D S+ LE +L+  YS                               + W+ALLGE QL+F+LFL + S+  L  WK+   +LC  S   ++     L+ AFL +       + +DFF
Sbjct:   15 VPVGSEFGIDYEAFRTADKFRGVKLIPPGLHFIFYASNGDNDNGHGIRQGFFVEI-KPNDVVIRTWSSETEELVPM---TREADIENLTRAVHGFQLDGNLGAYPQK-HAKSWHRLSKYITKDILAKCGLTVGGTISPGDPDAVSL-------DRGDAAIKPFFPDVAQVARFT-----RLTKPTSQRVASDLTRYHVDSSEHLEWLLKTHYS-------------------------------NDWRALLGEVQLSFVLFLFISSLDALHQWKQFVWMLC--SCEDAVTTRPELFAAFLQLTQVHLEQVGTDFF 279          
The following BLAST results are available for this feature:
BLAST of NO19G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23650.19.400e-10449.89A1 cistron-splicing factor, AAR2 [Nannochloropsis ... [more]
POM75829.16.000e-4233.53A1 cistron-splicing factor [Phytophthora palmivora... [more]
XP_024574058.11.600e-3933.13mRNA splicing factor [Plasmopara halstedii] >CEG37... [more]
ETI48596.12.100e-3929.81hypothetical protein F443_07411 [Phytophthora para... [more]
ETM00422.12.100e-3929.81hypothetical protein L917_02863 [Phytophthora para... [more]
XP_008903979.12.100e-3929.81hypothetical protein PPTG_09945 [Phytophthora para... [more]
ETP51876.13.600e-3929.81hypothetical protein F442_03057 [Phytophthora para... [more]
XP_009537834.11.800e-3832.83hypothetical protein PHYSODRAFT_530355 [Phytophtho... [more]
KUG01304.11.500e-3731.36AAR2 protein [Phytophthora nicotianae][more]
XP_008862348.14.200e-3533.33hypothetical protein H310_01103, partial [Aphanomy... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004493NSK004493Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01560.1NO19G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|558656gene_7554Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100191g15gene6797Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01560.1NO19G01560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01560 ID=NO19G01560|Name=NO19G01560|organism=Nannochloropsis oceanica|type=gene|length=1317bp
ATGCCCTCCGGGAGTGAGTTTGGAATCGACATGCAAATAAACCAGGTCGG
CCCCAACTTTCGAGGCGTTGCGGGCGTGCCTTTAGGCTTGCATTTCCTGA
CGTTCGGGACAGGCCAAGGCCTCCGCCAAGGCTTTTTCGTTCACATTTCC
CGTCCGTATGAAGTCCTCGTCAAATCATGGGACCCAACAGAAGAAGAATT
AATTGAGCAAGGAACAGGACTACGGGAAGGGTCTATGCATAATCTACTCC
AGGCCCTGCAAAGGGGTGAATTGAACAAGCAATTAGGGGCATACCCTGAA
AGGGAGCAGGGGAGGCTTTGGCGGGATCTGAGCGAGTACATAACAGAGGA
CGTCTTGGCACTATGTGGTTTGAAAGTGGAAACGCGTATCTTACCAGGAG
CTTGGGAAGAGGAGAAAATACATGCTCGAGGCGAAGAAGAGAAGAGGGAA
GGAGGGGAGTTGGTGCCGTTCTTTCCAGGGTTGGGCCACGCGGCCACTTT
CACGGATGTACGAGGCGCGAAACGGCCAAAGAATGCATTGGACATGACAC
CGGCAGAAGTGACACGATACCACTTGGATCGCTCTCAACTGTTGGAGGAA
GTGTTGAGGGATGTGTATAGTAAAATAGGCTCGTCCTCATCCTCGGCCTC
CCTCCTTCCCTCGTCCTTCTCGTCCTCCTCGTCCTCATCCTCTTCTCCTT
CTTTTCCTTCTTCGTCAGCCTGGAAAGCCCTTCTAGGCGAGTATCAGCTC
GCCTTCCTTCTCTTCCTTAACCTGTACTCCATGGCCGGCCTCAAGCACTG
GAAAGAAACCACCGCCCTGCTCTGCCACGCTTCCCTCTCTCCCTCCCTCC
CTCAATACTTCCCCCTCTATCACGCCTTCCTCCATGTCTTCTCGGCCCAG
TCTTCTGCTATGCCTTCGGATTTCTTTTTTAATGACGAAGAAGGAGAGAT
GGTGAAAGGCAAAGAGAGTTTCCTCCAGCCTTGCCTGAGGCAGTTGTTAC
GGAATGTGAGGGAGGGAGGGAGGGAGGGAGAAAGGGAGGGCAGCGGCTTG
CTGGAAGAAGTTGAGCTGTTCGCACGGAAGATGGAAGCGAGGTTCCTGGG
GTTTAATCTAAAGGCGAGGAGGGAGGGAGCGAGAAAGGACGAGGTAGAGG
AAGAGGAGGAGGAGGAGGATGGGCCGTTGGTGGTGCCGTGGGAGGAGGTG
GAGAGGGCGATGCTTCGGACGACGATGACGGAGGACTGGGAGGAGGAAGA
GAGGGAAGAAATAGGGAAGAATCGGGTTCTCGAGACGATTCAGGAACAGG
AGGGGGTGGAGGATTAG
back to top

protein sequence of NO19G01560.1

>NO19G01560.1-protein ID=NO19G01560.1-protein|Name=NO19G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MPSGSEFGIDMQINQVGPNFRGVAGVPLGLHFLTFGTGQGLRQGFFVHIS
RPYEVLVKSWDPTEEELIEQGTGLREGSMHNLLQALQRGELNKQLGAYPE
REQGRLWRDLSEYITEDVLALCGLKVETRILPGAWEEEKIHARGEEEKRE
GGELVPFFPGLGHAATFTDVRGAKRPKNALDMTPAEVTRYHLDRSQLLEE
VLRDVYSKIGSSSSSASLLPSSFSSSSSSSSSPSFPSSSAWKALLGEYQL
AFLLFLNLYSMAGLKHWKETTALLCHASLSPSLPQYFPLYHAFLHVFSAQ
SSAMPSDFFFNDEEGEMVKGKESFLQPCLRQLLRNVREGGREGEREGSGL
LEEVELFARKMEARFLGFNLKARREGARKDEVEEEEEEEDGPLVVPWEEV
ERAMLRTTMTEDWEEEEREEIGKNRVLETIQEQEGVED*
back to top
Synonyms
Publications