NO19G01530, NO19G01530 (gene) Nannochloropsis oceanica

Overview
NameNO19G01530
Unique NameNO19G01530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length765
Alignment locationchr19:466589..467353 +

Link to JBrowse

Properties
Property NameValue
DescriptionPas pac sensor hybrid histidine kinase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:466589..467353 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0016310phosphorylation
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Homology
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BLAST of NO19G01530 vs. NCBI_GenBank
Match: EWM23655.1 (pas pac sensor hybrid histidine kinase [Nannochloropsis gaditana])

HSP 1 Score: 156.8 bits (395), Expect = 9.200e-35
Identity = 89/182 (48.90%), Postives = 116/182 (63.74%), Query Frame = 0 
Query:   64 RKRRAPKMDLSEFTLEEQMEWKKARARQYSAMARQRQVEKENQLREKVNTLSMFKVLVTAAPDAILLLSPDVSARILFVNDRCNQLLKLPLRGGKEQPLAGRCLWEWMDEMDTGAVVAAVGKCMSSNDNTMFVQVTIRTPPLPLTVDGAVEQQQQEHQQERSTRVDLTLRSSELGLVLFLRP 246
            +KRRAP+MD S+ T EEQ++WKKARAR+YSAMAR+RQ +KE  LR +V  L ++K LV AAPDA+LLLS D   RILF N    +L     +GG E+PL GRCLWEW+D  D  A+ AA+GK +        V  T+  P       G+V +      Q+ S +V +TLRSS  GL+L +RP
Sbjct:  324 KKRRAPRMDFSKLTPEEQIQWKKARARKYSAMARERQSKKEEALRAEVGRLQVYKTLVEAAPDAMLLLSNDAQGRILFANKESEKLFGFIPKGGAEKPLPGRCLWEWLDVTDRVAIFAAIGKVVLCKHLVRAVPCTVWLP------SGSVPKHDARGPQQ-SLKVLITLRSSAQGLILIIRP 498
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BLAST of NO19G01530 vs. NCBI_GenBank
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 64.3 bits (155), Expect = 6.200e-7
Identity = 40/126 (31.75%), Postives = 66/126 (52.38%), Query Frame = 0 
Query:   66 RRAPKMDLSEFTLEEQMEWKKARARQYSAMARQRQVEKENQLREKVNTLSMFKVLVTAAPDAILLLSPDVSARILFVNDRCNQLLKLPLRGGKEQPLAGRCLWEWMDEMDTGAVVAAVGKCMSSND 192
            +RA + DLS +T  E+ E +K RAR YSA  R+RQ  + + LR++V  LS++K++V  AP+   +LS D  A++L+ N    +           +   GR +WE +   D   V+ A    +   +
Sbjct:  278 KRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLC-----HPESCVGRSVWEVVHREDKETVMGAFASAVMEKE 398
The following BLAST results are available for this feature:
BLAST of NO19G01530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23655.19.200e-3548.90pas pac sensor hybrid histidine kinase [Nannochlor... [more]
EWM23721.16.200e-731.75conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004492NSK004492Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01530.1NO19G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599144gene_7551Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100191g12gene6800Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01530.1NO19G01530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01530 ID=NO19G01530|Name=NO19G01530|organism=Nannochloropsis oceanica|type=gene|length=765bp
ATGCTTCACCCGAATGCTTCTTCACTTGCTGCTGCCGTAGGAAGACTCAG
TAGCAACAGCCGTGGTAGCAGCAGCTGGAAGAATGAATGCGAGGAGGAAG
AGGAGGAGCATAATGAAGGGGAAAGGGGAAATAGAGGAGGAGGAAGAAGA
AGAAAAATGATAAACCAGCAGTATCAGAATTATGCGGAGAGGAAGCGAAG
GGCCCCCAAAATGGATTTGAGTGAATTTACATTAGAGGAACAGATGGAGT
GGAAGAAGGCCAGGGCTCGGCAATACAGTGCGATGGCGCGTCAGAGGCAG
GTAGAGAAAGAGAATCAGCTTAGGGAGAAGGTGAATACGCTGTCCATGTT
CAAGGTGCTTGTCACGGCAGCGCCTGACGCGATTTTACTGCTCTCCCCAG
ACGTGAGTGCCCGAATCCTGTTCGTGAATGACCGGTGCAATCAGCTGTTG
AAGTTGCCACTGCGGGGAGGGAAGGAGCAGCCGCTTGCTGGGAGGTGTTT
GTGGGAGTGGATGGATGAAATGGATACGGGAGCAGTAGTCGCAGCCGTTG
GGAAGTGCATGTCGAGTAACGATAACACGATGTTTGTCCAGGTTACGATT
CGCACGCCTCCCCTCCCGCTTACTGTAGATGGGGCAGTCGAGCAGCAACA
GCAGGAACATCAACAGGAGAGGTCGACGAGGGTGGACTTGACGCTGAGGT
CGAGCGAGCTTGGGTTGGTGTTGTTCTTGAGGCCGGAGGGGAGGGAAGGG
TATGGAGGTGAATAG
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protein sequence of NO19G01530.1

>NO19G01530.1-protein ID=NO19G01530.1-protein|Name=NO19G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MLHPNASSLAAAVGRLSSNSRGSSSWKNECEEEEEEHNEGERGNRGGGRR
RKMINQQYQNYAERKRRAPKMDLSEFTLEEQMEWKKARARQYSAMARQRQ
VEKENQLREKVNTLSMFKVLVTAAPDAILLLSPDVSARILFVNDRCNQLL
KLPLRGGKEQPLAGRCLWEWMDEMDTGAVVAAVGKCMSSNDNTMFVQVTI
RTPPLPLTVDGAVEQQQQEHQQERSTRVDLTLRSSELGLVLFLRPEGREG
YGGE*
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Synonyms
Publications