NO19G01480, NO19G01480 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO19G01480 vs. NCBI_GenBank
Match: EWM23621.1 (trna pseudouridine synthase 3 [Nannochloropsis gaditana]) HSP 1 Score: 626.7 bits (1615), Expect = 1.000e-175 Identity = 391/751 (52.06%), Postives = 459/751 (61.12%), Query Frame = 0 Query: 15 EGQAAPTCT---SNKYAPPQSPSASSNGHASMDSLPPPPLQQEQLQLQDVTREQLCRVVQHIMEQDGGKALVHQALDMVRPPPPLLKNPKLPPHPQKPKRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTS-------SVSSPFT---VDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIWSIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVTTVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPSALFRLWTELRMGWGAAAVKLARLNNHLEYVGELEVSRNELEQWADTELKEGRFQQGXXXXXXXXXXXXXXXXXXXXXXRVG-------------EVGGEDISVDGSGKGSDDGDCSNDDRGKEEEEEMVMIKWRDALAFLSTRGIVPDLEESKKRKGIWTPYIPLRDRPLGKSYEEAVAEMGAKKRELYKQAQKKRETAERKGGMADFFLRMRGTTPTVSSS 740 EG A +CT + + P QSPS PP P QD+TR QL +++HI EQ GKALV AL + L P P+K K R FDFS+ TR IA+QFSYEG PYNGL SNG +E E+VEAQLLMACIK KLIPDRASACVSRCGRTD+GVNALRQVVGLRVRS L TS S SSP AP A GDAD A +T T ++ +D +L+P AL A G+IWS Y + T ELDY TLLNRVLP DIR LGWAPVP GFSARFCC++RTYRYFFDG+G DL +M A +LVG+HDFRNFCKMDVTTVQSFVR+V+EA +L GEW W +DS+G LQIQGQAFLWHMVRCIM++LF +GR QE G+VDDLL+++ YP KP Y LASEHALVLHDCHF +L+F +QPSALFRLWTELR+ WG AV+LARL + + YVGEL V + L+ W D EL GRFQ XXXXXXXXXXXXXXXXXXX + E SV G SD G + D++ ++E+ V++ WRDALA+LS +GIVPDLE SKK+KGIWTPY+PL+DRPLGK+YEEAV MG KKRELY+QAQ+KR+ AE KGGM FF MRGT+P S S Sbjct: 27 EGPAPESCTGLDQDAHLPFQSPS------------PPLP--------QDLTRSQLYSMLRHIQEQTDGKALVGHALHHIL---SLATGSTPHPPPKKQKSARGFDFSRFGTRHIAIQFSYEGGPYNGLTSNGPNEEESVEAQLLMACIKTKLIPDRASACVSRCGRTDRGVNALRQVVGLRVRSILSTPSTSPWPPACASSSSPCASPDQHAPRVIPDANGDADSYNEHAETTVT--------------------------------------GGFFKEEAEDPALDPAALAAGGNIWSASYDTRTEGELDYTTLLNRVLPLDIRVLGWAPVPDGFSARFCCSYRTYRYFFDGDGYDLGRMSAAAGRLVGEHDFRNFCKMDVTTVQSFVRVVREATVLTAGEWGWALDSRG------------------------------PMPGPSSTPARRVCCLQIQGQAFLWHMVRCIMAVLFAVGRGQEEVGVVDDLLDVSRYPGKPLYALASEHALVLHDCHFERLRFHHQPSALFRLWTELRLAWGQTAVRLARLQDQMGYVGELAVRKAALDGWVDAELGMGRFQGSRFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTCEAMNNESGSVHGV---SDRGGEAEDEKSVGKKEDTVLMTWRDALAYLSAQGIVPDLEVSKKKKGIWTPYVPLKDRPLGKTYEEAVLGMGTKKRELYEQAQRKRKAAETKGGMEAFFHNMRGTSPGPSLS 683
BLAST of NO19G01480 vs. NCBI_GenBank
Match: GAX28157.1 (tRNA pseudouridine38/39 synthase [Fistulifera solaris]) HSP 1 Score: 237.7 bits (605), Expect = 1.300e-58 Identity = 189/617 (30.63%), Postives = 259/617 (41.98%), Query Frame = 0 Query: 123 RFIALQFSYEGAPYNGLASN-GEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIW------SIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVTTVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPSALFRLWTELRMGWGAAAVKLARLNNHLEYVGELEVSRNELEQWADTELKEGRFQQGXXXXXXXXXXXXXXXXXXXXXXRVGEVGGEDISVDGSGKGSDDGDCSNDDRGKEEEEEMVMIKWRDALAFLSTRGIVPDLEESKKRKGIWTPYIPLRDRPLGKSYEEAVAEMGA--KKRELY--KQAQKKRETAERKGGMADFFLR 729 R IALQ Y+GA Y GLA N G + ++VE L A + LI DR+S SRCGRTDKGV+A QVV L ++SA+ L Q+S + GQ L +T P + +W S P T E Y +LN +LP DI+ LGW PV FSARF C RTYRYFF E LDLE+MRE L+G+HDFRNFCKMDV V +F R++ +A I+E +P S QIQGQAFLWH +RCI SILF+IGR ESP ++ +LL+I YP KP YPLA E LVLH+C F L+F Y + ++ ++ + W + AR+ N LE + L V ++L+ + L++ R Q + +N+ E ++ W+ A+ +L G + E+ +IP+ DR +G +YEE + + A +KR+ Y K QK++ E AD R Sbjct: 89 RHIALQIYYDGAKYTGLAENVGVEHDQSVEKALFRALRQAHLIEDRSSCQYSRCGRTDKGVSAAGQVVALELKSAISL------------------------------------------QASWDEA------------------------------GQRLLNTDELPKNAVDALQLWVPPRKPSAPKQLRTVREYSYDRVLNNLLPSDIQVLGWVPVDDAFSARFSCRDRTYRYFFHSESLDLERMREAMTLLLGEHDFRNFCKMDVEKVYNFKRVIHQAIIVE-----------KEPRS------------------------------------SGVCYFQIQGQAFLWHQIRCIASILFSIGRGYESPSLITELLDINKYPGKPAYPLAPERPLVLHNCGFGHLQFGYTVANIWSVYETQKEEWKDLILTAARIQNLLETLESLTVRTDDLQAF---YLEKTRVQSKKNNKRFLV------------------------------------NLTNEFAALPSE---TLVSWKQAMEWLQQNGQAMNNSET---------HIPMADRSMGTTYEEKLQALQASDRKRQRYETKVVQKRKSKQEDAQFYADMTQR 535
BLAST of NO19G01480 vs. NCBI_GenBank
Match: GAX25943.1 (tRNA pseudouridine38/39 synthase [Fistulifera solaris]) HSP 1 Score: 234.6 bits (597), Expect = 1.100e-57 Identity = 183/605 (30.25%), Postives = 258/605 (42.64%), Query Frame = 0 Query: 123 RFIALQFSYEGAPYNGLASN-GEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIW------SIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVTTVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPSALFRLWTELRMGWGAAAVKLARLNNHLEYVGELEVSRNELEQWADTELKEGRFQQGXXXXXXXXXXXXXXXXXXXXXXRVGEVGGEDISVDGSGKGSDDGDCSNDDRGKEEEEEMVMIKWRDALAFLSTRGIVPDLEESKKRKGIWTPYIPLRDRPLGKSYEEAVAEMGA--KKRELYK-QAQKKRETAE 718 R IALQ Y+G+ Y GLA N G + ++VE L A + LI R+S SRCGRTDKGV+A QVV L+++SA+ L Q+S + GQ L +T P + +W S P T E Y +LN +LP DI+ LGW PV FSARF C RTYRYFF E +DLE+MR+ L+G+HDFRNFCKMDV V +F R++ +A I+E K P S QIQGQAFLWH +RCI SILF+IGR ESP ++ +LL++ YP KP YPLA E LVLH+C F L+F Y + L+ ++ + W + AR+ N LE + L V ++L+ + L++ R Q + +N+ E MI W+ A+ +L G + + E+ +IP+ DR +G +YEE + + A +KR+ Y+ +KR++ + Sbjct: 89 RHIALQIYYDGSKYTGLAENVGVEHDQSVEKALFRALRQAYLIEGRSSCQYSRCGRTDKGVSAAGQVVALQLKSAISL------------------------------------------QASWDEA------------------------------GQRLLNTDELPKNAVDALQLWVPPRKPSAPKQLRTVREYAYDRVLNNLLPSDIQVLGWVPVDDAFSARFSCRDRTYRYFFHSESMDLERMRDAMTLLLGEHDFRNFCKMDVEKVYNFKRVIHQAIIVE----------KEPPAS-------------------------------------GVCYFQIQGQAFLWHQIRCIASILFSIGRGYESPTLISELLDVKKYPGKPAYPLAPERPLVLHNCGFGHLQFGYTVANLWSVYETQKEQWKELILTAARIQNLLETIESLTVRTDDLQAF---YLEKKRVQSKKNNKRYF------------------------------------ANLTNEIAAVPSER---MISWKQAMEWLQQNGQIMNNTET---------HIPMADRSMGTTYEEKLQALQASDRKRQRYETNVMQKRKSKQ 523
BLAST of NO19G01480 vs. NCBI_GenBank
Match: OQS00573.1 (tRNA pseudouridine synthase [Achlya hypogyna]) HSP 1 Score: 223.8 bits (569), Expect = 1.900e-54 Identity = 166/533 (31.14%), Postives = 235/533 (44.09%), Query Frame = 0 Query: 56 LQLQDVTREQLCRVVQHIMEQDGGKA-LVHQALDMVRPPPPLLKNPKLPPHPQKPKRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIWSIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVP-PGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVG-QHDFRNFCKMDVTTVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPSALFRLWTELRMGWGAAAVKLARLNNHLEYVGELEVSRNELEQWADTELKEGRFQQ 586 ++ ++ T+++L +V++ + + A V A VR P K K + QKP + FDFS++ TR IAL+FSY G Y G A E T+E L+ A ++ +++ D + SRCGRTD GV+AL QVVGL VRS +P + + T+D P NE+ L D ++ T ELDY LN LP DIR GWAP P P +SARF C R Y+YFF +DLE+MRE A LVG D+RNFC++D +V ++ R + ++ E DS G L+I G+AFLWH VRC+ +ILF +GR E P +V LL++ P KP Y +ASE LVLHDC + + TY P L R++ ++ W AA+++ A L N LE + E+ + R + + LK R Q Sbjct: 6 VRYEEFTKDELLQVIRRLRDSPDNLAHAVDTAARAVRSGEPSAKKQKKLAYNQKP--PKPFDFSRYRTRHIALKFSYAGEKYAGFARQEHME-HTIERYLIDALLRARMVEDFNNCGYSRCGRTDAGVSALGQVVGLIVRSNVPAD--AIILDDKTIDDIRP----------------------------------------------------------NESFRVQLPDGTIK------------------TLMELDYCVSLNSALPADIRVYGWAPAPMPEWSARFHCIGRVYKYFFHRRNMDLERMREAAALLVGVDQDYRNFCRLD-PSVPTYTRSISSFKVHETTP----ADSAG-------------------------------------GNYYQLCYLEIHGKAFLWHQVRCMAAILFLVGRGLEQPALVTQLLDVNATPRKPQYEMASELPLVLHDCKYDTMHMTYTPGVLNRVYCDIESQWEAASLRTAMLRNQLETLKEITIERGQALEEVQKRLKHLRPDQ 415
BLAST of NO19G01480 vs. NCBI_GenBank
Match: GAY01918.1 (tRNA pseudouridine synthase, putative [Pythium insidiosum]) HSP 1 Score: 218.8 bits (556), Expect = 6.300e-53 Identity = 154/465 (33.12%), Postives = 204/465 (43.87%), Query Frame = 0 Query: 107 QKPKRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLAD---GDIWSIPYPS---TTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVTTVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPSALFRLWTELRMGWGAAAVKLARLNNHLEYVGELEV 566 +KPK R+F SK+A R +A++F Y G Y+G A E ET+E +L A KLI S SRCGRTDKGV+A QV+G+RVRS LP+ D L VA + D G+ + + P+ T ELDYA +NR LP DIR P P FSARF C R YRYFF + LD+EKMR GA KLVG HD+RNFC++D T+ +F R ++ EIL + + S+ +I GQAFLWH VRC++ +LF IG +E P IVD LL+IA P KP Y +AS+ +L L DC F ++F Y P AL + + W AA+K A L + L+ + + +V Sbjct: 419 KKPK--REFQISKYAQRLVAIKFLYIGDKYDGFARQDHTE-ETIERYVLSALQHTKLIESIDSCEYSRCGRTDKGVSAFGQVIGIRVRSNLPV------------------------------------------------------------------------------------DAELLDVATIDDVRPGERFRVKMPNGGERTLTELDYAVHINRALPDDIRVYAVVPAPASFSARFDCRERMYRYFFVRKTLDIEKMRLGAAKLVGTHDYRNFCRID-TSKHTFERKIRSFEILACEDHETKEPSQ------------------------------------QMFRFEVSALTEIYGQAFLWHQVRCMVQVLFLIGEGKEDPEIVDRLLDIAATPRKPQYDMASDRSLCLQDCLFDNVEFEYSPLALHHVHEHVSSLWEQAAIKTAMLRSDLDMLEQFQV 759
BLAST of NO19G01480 vs. NCBI_GenBank
Match: OAQ25366.1 (tRNA pseudouridine synthase [Mortierella elongata AG-77]) HSP 1 Score: 218.4 bits (555), Expect = 8.200e-53 Identity = 147/463 (31.75%), Postives = 210/463 (45.36%), Query Frame = 0 Query: 108 KPKRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIWSIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVT-TVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPS-------ALFRLWTELRMGWGAAAVKLARLNNHLEYVGE 563 K K R FDFSK+A R +A + +Y G PY G AS G +EI+TVE++L A + ++I D SRCGRTD+GV+ L QV+ L VRSALP S + S D P T D L Q + G V +G + DG ++ EL Y ++NR+LPPDIR + WAPV F+ARF C+ R Y+YFF +D+EKMR + K +G HDFRNFCK D + T++++ R + E I V E + + L ++G AFLWH VRC+MS+L ++G+ E P ++D L+++ PAKP+Y +AS+ LVL+DCHF +++ YQ RL+ + W K + LE + + Sbjct: 113 KRKDRRPFDFSKYAKRHVAFRVAYFGWPYGGFASQGMNEIKTVESELFNAMLAARIIEDPLQCNYSRCGRTDRGVSGLGQVIALTVRSALPKSSPHVIRS--EGDGFVPETKDLADEG------------LTQEELEAKAG-------------------------VYWKRG----------IKRNKDGSVFG---------ELAYLNIINRLLPPDIRIVAWAPVAEDFNARFHCSWRQYKYFFPKGIIDIEKMRAASVKFLGTHDFRNFCKYDASKTIENYDRTIHEISIETVPEHNFPAKKSRE-----------------------------------------FYQLTLKGSAFLWHQVRCMMSVLLSVGQGLEEPEVIDQLMDVQQCPAKPNYDMASDLPLVLYDCHFENIEWQYQTEVDLVNDITPLRLYRAMEDQWSCYVTKSLMYSRMLEQLDQ 476
BLAST of NO19G01480 vs. NCBI_GenBank
Match: XP_021875273.1 (pseudouridine synthase [Lobosporangium transversale] >ORY94331.1 pseudouridine synthase [Lobosporangium transversale]) HSP 1 Score: 217.2 bits (552), Expect = 1.800e-52 Identity = 140/422 (33.18%), Postives = 204/422 (48.34%), Query Frame = 0 Query: 108 KPKRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIWSIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVT-TVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQ 529 K K R FDFSK+A R +A + +Y G PY G AS G +++TVE++L A + ++I D + SRCGRTD+GV+ L QV+ L VRSALP SSP+ + + GD D A + L Q + G N V DG ++ EL Y ++NR+LPPDIR + WAPVP F+ARF CA R Y+YFF +D+++MR A K +G HDFRNFCK D + T+ ++ R + I V E ++ + ++G+ L ++G AFLWH VRC+M++LF +G+ E P ++D +++I PAKP+Y +AS+ LV +DCHF +++ YQ Sbjct: 106 KRKDRRPFDFSKYAKRHVAFKIAYFGWPYAGFASQGAVDVKTVESELFNALLAARIIEDPQNCNYSRCGRTDRGVSGLGQVIALTVRSALP------KSSPYVI-------RSEGDGYDPKAEEEKS-EGLTQEELESKAGVYYK-----------------------------------NGVKRNKDGSVFG---------ELAYLNIVNRLLPPDIRIVAWAPVPEDFNARFHCAWREYKYFFPKGIIDIDRMRTAATKFLGTHDFRNFCKYDSSKTIVNYDRTIMAISIDTVPEHEFPM-TQGREF----------------------------------------YQLTLRGSAFLWHQVRCMMAVLFAVGQGLEEPEVIDQMMDIKQCPAKPNYDMASDLPLVFYDCHFENVEWQYQ 428
BLAST of NO19G01480 vs. NCBI_GenBank
Match: KFH64929.1 (hypothetical protein MVEG_09657 [Mortierella verticillata NRRL 6337]) HSP 1 Score: 216.5 bits (550), Expect = 3.100e-52 Identity = 144/442 (32.58%), Postives = 209/442 (47.29%), Query Frame = 0 Query: 91 RPPPPLLKNPKLPPHPQKPKRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSP---FTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIWSIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVT-TVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQ 529 RP P N P + K R FDFSK+A R +A + +Y G PY G AS G +EI+TVE+++ A + ++I D + SRCGRTD+GV+ L QV+ L VRS+LP S + S + + P P L Q + +G V +G + DG ++ EL Y ++NR+LPPDIR + WAPV F+ARF C+ R Y+YFF +D+E+MR A K +G HDFRNFCK D + T++++ R + E I V E ++ S+G L ++G AFLWH VRC+M++LF +G+ E P I+D ++++ PAKP+Y +AS+ LVL+DCHF L++ YQ Sbjct: 92 RPESP--SNNYSPIETPRKKDRRPFDFSKYAKRHVAFRVAYFGWPYGGFASQGVNEIKTVESEIFNALMAARIIDDPLTCNYSRCGRTDRGVSGLGQVIALTVRSSLPKSSPHVIRSEGDGYVPETPNPDGPV-----------------LTQEEQEAKEG-------------------------VYWKRG----------IKRNKDGSVFG---------ELAYLNIINRLLPPDIRIVAWAPVSEDFNARFHCSWRQYKYFFPKGIIDIERMRTAAVKFLGTHDFRNFCKYDASKTIENYDRTIHEISIEPVPEHEFA--SRGS---------------------------------------NEFYQLTLKGSAFLWHQVRCMMAVLFCVGQGLEEPDIIDKMMDLKQCPAKPNYDMASDLPLVLYDCHFENLEWQYQ 429
BLAST of NO19G01480 vs. NCBI_GenBank
Match: XP_006140669.1 (PREDICTED: tRNA pseudouridine(38/39) synthase isoform X2 [Tupaia chinensis] >XP_006140671.1 PREDICTED: tRNA pseudouridine(38/39) synthase isoform X2 [Tupaia chinensis] >ELW72237.1 tRNA pseudouridine synthase 3 [Tupaia chinensis]) HSP 1 Score: 216.1 bits (549), Expect = 4.100e-52 Identity = 147/450 (32.67%), Postives = 193/450 (42.89%), Query Frame = 0 Query: 110 KRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIWSIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVTT-VQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPSALFRLWTELRMGWGAAAVKLARLNNHLE 559 K R FDFS H R +AL+ +Y G Y G AS E+ TVE QL A K +L+ R ++ RCGRTD+GV+A QV+ L +RS LP +G+ +D + + T+ E+ Y +LNRVLPPDIR L WAPV PGFSARF C RTYRYFF LD+E M A+K VG HDFRNFCKMDV V +F R V A++ VG+ S G+ Q+ GQAFL+H VRC+M++LF IG+ E P ++D+LL+I P KP Y +A E LVL+DC F +++ Y A T L+ W AV+ L + L+ Sbjct: 50 KAKRAFDFSAHGRRHVALRIAYLGWGYQGFASQ-ENTSNTVEEQLFEALTKTRLVESRQTSNYHRCGRTDRGVSAFGQVISLDLRSQLP-------------------------------------------------------------------------------RGRGSEDVHVE---------------GTDTAQEIRYTHILNRVLPPDIRVLAWAPVEPGFSARFSCLERTYRYFFPRADLDVESMNSAAQKYVGTHDFRNFCKMDVANGVVNFQRTVLSAQVQRVGQ------SPGE---------------------------------HTQQAPFQLCQFQVTGQAFLYHQVRCMMAVLFLIGQGLERPEVIDELLDIESNPQKPQYSMAVEFPLVLYDCTFENIRWVYDREAQELNITHLQQLWAKHAVQAHMLYSLLQ 365
BLAST of NO19G01480 vs. NCBI_GenBank
Match: XP_006140667.1 (PREDICTED: tRNA pseudouridine(38/39) synthase isoform X1 [Tupaia chinensis]) HSP 1 Score: 216.1 bits (549), Expect = 4.100e-52 Identity = 147/450 (32.67%), Postives = 193/450 (42.89%), Query Frame = 0 Query: 110 KRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIWSIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVTT-VQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPSALFRLWTELRMGWGAAAVKLARLNNHLE 559 K R FDFS H R +AL+ +Y G Y G AS E+ TVE QL A K +L+ R ++ RCGRTD+GV+A QV+ L +RS LP +G+ +D + + T+ E+ Y +LNRVLPPDIR L WAPV PGFSARF C RTYRYFF LD+E M A+K VG HDFRNFCKMDV V +F R V A++ VG+ S G+ Q+ GQAFL+H VRC+M++LF IG+ E P ++D+LL+I P KP Y +A E LVL+DC F +++ Y A T L+ W AV+ L + L+ Sbjct: 85 KAKRAFDFSAHGRRHVALRIAYLGWGYQGFASQ-ENTSNTVEEQLFEALTKTRLVESRQTSNYHRCGRTDRGVSAFGQVISLDLRSQLP-------------------------------------------------------------------------------RGRGSEDVHVE---------------GTDTAQEIRYTHILNRVLPPDIRVLAWAPVEPGFSARFSCLERTYRYFFPRADLDVESMNSAAQKYVGTHDFRNFCKMDVANGVVNFQRTVLSAQVQRVGQ------SPGE---------------------------------HTQQAPFQLCQFQVTGQAFLYHQVRCMMAVLFLIGQGLERPEVIDELLDIESNPQKPQYSMAVEFPLVLYDCTFENIRWVYDREAQELNITHLQQLWAKHAVQAHMLYSLLQ 400 The following BLAST results are available for this feature:
BLAST of NO19G01480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO19G01480 ID=NO19G01480|Name=NO19G01480|organism=Nannochloropsis oceanica|type=gene|length=4383bpback to top protein sequence of NO19G01480.1 >NO19G01480.1-protein ID=NO19G01480.1-protein|Name=NO19G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=811bpback to top Synonyms
Publications
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