NO19G01480, NO19G01480 (gene) Nannochloropsis oceanica

Overview
NameNO19G01480
Unique NameNO19G01480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4383
Alignment locationchr19:450524..454906 -

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Properties
Property NameValue
DescriptionTrna pseudouridine synthase 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:450524..454906 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR001406PsdUridine_synth_TruA
IPR020097PsdUridine_synth_TruA_a/b_dom
Homology
BLAST of NO19G01480 vs. NCBI_GenBank
Match: EWM23621.1 (trna pseudouridine synthase 3 [Nannochloropsis gaditana])

HSP 1 Score: 626.7 bits (1615), Expect = 1.000e-175
Identity = 391/751 (52.06%), Postives = 459/751 (61.12%), Query Frame = 0
Query:   15 EGQAAPTCT---SNKYAPPQSPSASSNGHASMDSLPPPPLQQEQLQLQDVTREQLCRVVQHIMEQDGGKALVHQALDMVRPPPPLLKNPKLPPHPQKPKRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTS-------SVSSPFT---VDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIWSIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVTTVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPSALFRLWTELRMGWGAAAVKLARLNNHLEYVGELEVSRNELEQWADTELKEGRFQQGXXXXXXXXXXXXXXXXXXXXXXRVG-------------EVGGEDISVDGSGKGSDDGDCSNDDRGKEEEEEMVMIKWRDALAFLSTRGIVPDLEESKKRKGIWTPYIPLRDRPLGKSYEEAVAEMGAKKRELYKQAQKKRETAERKGGMADFFLRMRGTTPTVSSS 740
            EG A  +CT    + + P QSPS            PP P        QD+TR QL  +++HI EQ  GKALV  AL  +     L       P P+K K  R FDFS+  TR IA+QFSYEG PYNGL SNG +E E+VEAQLLMACIK KLIPDRASACVSRCGRTD+GVNALRQVVGLRVRS L    TS       S SSP       AP     A GDAD     A +T T                                           ++ +D +L+P AL A G+IWS  Y + T  ELDY TLLNRVLP DIR LGWAPVP GFSARFCC++RTYRYFFDG+G DL +M   A +LVG+HDFRNFCKMDVTTVQSFVR+V+EA +L  GEW W +DS+G                                             LQIQGQAFLWHMVRCIM++LF +GR QE  G+VDDLL+++ YP KP Y LASEHALVLHDCHF +L+F +QPSALFRLWTELR+ WG  AV+LARL + + YVGEL V +  L+ W D EL  GRFQ     XXXXXXXXXXXXXXXXXXX                 +  E  SV G    SD G  + D++   ++E+ V++ WRDALA+LS +GIVPDLE SKK+KGIWTPY+PL+DRPLGK+YEEAV  MG KKRELY+QAQ+KR+ AE KGGM  FF  MRGT+P  S S
Sbjct:   27 EGPAPESCTGLDQDAHLPFQSPS------------PPLP--------QDLTRSQLYSMLRHIQEQTDGKALVGHALHHIL---SLATGSTPHPPPKKQKSARGFDFSRFGTRHIAIQFSYEGGPYNGLTSNGPNEEESVEAQLLMACIKTKLIPDRASACVSRCGRTDRGVNALRQVVGLRVRSILSTPSTSPWPPACASSSSPCASPDQHAPRVIPDANGDADSYNEHAETTVT--------------------------------------GGFFKEEAEDPALDPAALAAGGNIWSASYDTRTEGELDYTTLLNRVLPLDIRVLGWAPVPDGFSARFCCSYRTYRYFFDGDGYDLGRMSAAAGRLVGEHDFRNFCKMDVTTVQSFVRVVREATVLTAGEWGWALDSRG------------------------------PMPGPSSTPARRVCCLQIQGQAFLWHMVRCIMAVLFAVGRGQEEVGVVDDLLDVSRYPGKPLYALASEHALVLHDCHFERLRFHHQPSALFRLWTELRLAWGQTAVRLARLQDQMGYVGELAVRKAALDGWVDAELGMGRFQGSRFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTCEAMNNESGSVHGV---SDRGGEAEDEKSVGKKEDTVLMTWRDALAYLSAQGIVPDLEVSKKKKGIWTPYVPLKDRPLGKTYEEAVLGMGTKKRELYEQAQRKRKAAETKGGMEAFFHNMRGTSPGPSLS 683          
BLAST of NO19G01480 vs. NCBI_GenBank
Match: GAX28157.1 (tRNA pseudouridine38/39 synthase [Fistulifera solaris])

HSP 1 Score: 237.7 bits (605), Expect = 1.300e-58
Identity = 189/617 (30.63%), Postives = 259/617 (41.98%), Query Frame = 0
Query:  123 RFIALQFSYEGAPYNGLASN-GEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIW------SIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVTTVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPSALFRLWTELRMGWGAAAVKLARLNNHLEYVGELEVSRNELEQWADTELKEGRFQQGXXXXXXXXXXXXXXXXXXXXXXRVGEVGGEDISVDGSGKGSDDGDCSNDDRGKEEEEEMVMIKWRDALAFLSTRGIVPDLEESKKRKGIWTPYIPLRDRPLGKSYEEAVAEMGA--KKRELY--KQAQKKRETAERKGGMADFFLR 729
            R IALQ  Y+GA Y GLA N G +  ++VE  L  A  +  LI DR+S   SRCGRTDKGV+A  QVV L ++SA+ L                                          Q+S  +                               GQ L +T   P   +    +W      S P    T  E  Y  +LN +LP DI+ LGW PV   FSARF C  RTYRYFF  E LDLE+MRE    L+G+HDFRNFCKMDV  V +F R++ +A I+E            +P S                                          QIQGQAFLWH +RCI SILF+IGR  ESP ++ +LL+I  YP KP YPLA E  LVLH+C F  L+F Y  + ++ ++   +  W    +  AR+ N LE +  L V  ++L+ +    L++ R Q                                              + +N+      E    ++ W+ A+ +L   G   +  E+         +IP+ DR +G +YEE +  + A  +KR+ Y  K  QK++   E     AD   R
Sbjct:   89 RHIALQIYYDGAKYTGLAENVGVEHDQSVEKALFRALRQAHLIEDRSSCQYSRCGRTDKGVSAAGQVVALELKSAISL------------------------------------------QASWDEA------------------------------GQRLLNTDELPKNAVDALQLWVPPRKPSAPKQLRTVREYSYDRVLNNLLPSDIQVLGWVPVDDAFSARFSCRDRTYRYFFHSESLDLERMREAMTLLLGEHDFRNFCKMDVEKVYNFKRVIHQAIIVE-----------KEPRS------------------------------------SGVCYFQIQGQAFLWHQIRCIASILFSIGRGYESPSLITELLDINKYPGKPAYPLAPERPLVLHNCGFGHLQFGYTVANIWSVYETQKEEWKDLILTAARIQNLLETLESLTVRTDDLQAF---YLEKTRVQSKKNNKRFLV------------------------------------NLTNEFAALPSE---TLVSWKQAMEWLQQNGQAMNNSET---------HIPMADRSMGTTYEEKLQALQASDRKRQRYETKVVQKRKSKQEDAQFYADMTQR 535          
BLAST of NO19G01480 vs. NCBI_GenBank
Match: GAX25943.1 (tRNA pseudouridine38/39 synthase [Fistulifera solaris])

HSP 1 Score: 234.6 bits (597), Expect = 1.100e-57
Identity = 183/605 (30.25%), Postives = 258/605 (42.64%), Query Frame = 0
Query:  123 RFIALQFSYEGAPYNGLASN-GEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIW------SIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVTTVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPSALFRLWTELRMGWGAAAVKLARLNNHLEYVGELEVSRNELEQWADTELKEGRFQQGXXXXXXXXXXXXXXXXXXXXXXRVGEVGGEDISVDGSGKGSDDGDCSNDDRGKEEEEEMVMIKWRDALAFLSTRGIVPDLEESKKRKGIWTPYIPLRDRPLGKSYEEAVAEMGA--KKRELYK-QAQKKRETAE 718
            R IALQ  Y+G+ Y GLA N G +  ++VE  L  A  +  LI  R+S   SRCGRTDKGV+A  QVV L+++SA+ L                                          Q+S  +                               GQ L +T   P   +    +W      S P    T  E  Y  +LN +LP DI+ LGW PV   FSARF C  RTYRYFF  E +DLE+MR+    L+G+HDFRNFCKMDV  V +F R++ +A I+E          K  P S                                          QIQGQAFLWH +RCI SILF+IGR  ESP ++ +LL++  YP KP YPLA E  LVLH+C F  L+F Y  + L+ ++   +  W    +  AR+ N LE +  L V  ++L+ +    L++ R Q                                              + +N+      E    MI W+ A+ +L   G + +  E+         +IP+ DR +G +YEE +  + A  +KR+ Y+    +KR++ +
Sbjct:   89 RHIALQIYYDGSKYTGLAENVGVEHDQSVEKALFRALRQAYLIEGRSSCQYSRCGRTDKGVSAAGQVVALQLKSAISL------------------------------------------QASWDEA------------------------------GQRLLNTDELPKNAVDALQLWVPPRKPSAPKQLRTVREYAYDRVLNNLLPSDIQVLGWVPVDDAFSARFSCRDRTYRYFFHSESMDLERMRDAMTLLLGEHDFRNFCKMDVEKVYNFKRVIHQAIIVE----------KEPPAS-------------------------------------GVCYFQIQGQAFLWHQIRCIASILFSIGRGYESPTLISELLDVKKYPGKPAYPLAPERPLVLHNCGFGHLQFGYTVANLWSVYETQKEQWKELILTAARIQNLLETIESLTVRTDDLQAF---YLEKKRVQSKKNNKRYF------------------------------------ANLTNEIAAVPSER---MISWKQAMEWLQQNGQIMNNTET---------HIPMADRSMGTTYEEKLQALQASDRKRQRYETNVMQKRKSKQ 523          
BLAST of NO19G01480 vs. NCBI_GenBank
Match: OQS00573.1 (tRNA pseudouridine synthase [Achlya hypogyna])

HSP 1 Score: 223.8 bits (569), Expect = 1.900e-54
Identity = 166/533 (31.14%), Postives = 235/533 (44.09%), Query Frame = 0
Query:   56 LQLQDVTREQLCRVVQHIMEQDGGKA-LVHQALDMVRPPPPLLKNPKLPPHPQKPKRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIWSIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVP-PGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVG-QHDFRNFCKMDVTTVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPSALFRLWTELRMGWGAAAVKLARLNNHLEYVGELEVSRNELEQWADTELKEGRFQQ 586
            ++ ++ T+++L +V++ + +     A  V  A   VR   P  K  K   + QKP   + FDFS++ TR IAL+FSY G  Y G A     E  T+E  L+ A ++ +++ D  +   SRCGRTD GV+AL QVVGL VRS +P    + +    T+D   P                                                          NE+    L D ++                   T  ELDY   LN  LP DIR  GWAP P P +SARF C  R Y+YFF    +DLE+MRE A  LVG   D+RNFC++D  +V ++ R +   ++ E        DS G                                             L+I G+AFLWH VRC+ +ILF +GR  E P +V  LL++   P KP Y +ASE  LVLHDC +  +  TY P  L R++ ++   W AA+++ A L N LE + E+ + R +  +     LK  R  Q
Sbjct:    6 VRYEEFTKDELLQVIRRLRDSPDNLAHAVDTAARAVRSGEPSAKKQKKLAYNQKP--PKPFDFSRYRTRHIALKFSYAGEKYAGFARQEHME-HTIERYLIDALLRARMVEDFNNCGYSRCGRTDAGVSALGQVVGLIVRSNVPAD--AIILDDKTIDDIRP----------------------------------------------------------NESFRVQLPDGTIK------------------TLMELDYCVSLNSALPADIRVYGWAPAPMPEWSARFHCIGRVYKYFFHRRNMDLERMREAAALLVGVDQDYRNFCRLD-PSVPTYTRSISSFKVHETTP----ADSAG-------------------------------------GNYYQLCYLEIHGKAFLWHQVRCMAAILFLVGRGLEQPALVTQLLDVNATPRKPQYEMASELPLVLHDCKYDTMHMTYTPGVLNRVYCDIESQWEAASLRTAMLRNQLETLKEITIERGQALEEVQKRLKHLRPDQ 415          
BLAST of NO19G01480 vs. NCBI_GenBank
Match: GAY01918.1 (tRNA pseudouridine synthase, putative [Pythium insidiosum])

HSP 1 Score: 218.8 bits (556), Expect = 6.300e-53
Identity = 154/465 (33.12%), Postives = 204/465 (43.87%), Query Frame = 0
Query:  107 QKPKRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLAD---GDIWSIPYPS---TTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVTTVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPSALFRLWTELRMGWGAAAVKLARLNNHLEYVGELEV 566
            +KPK  R+F  SK+A R +A++F Y G  Y+G A     E ET+E  +L A    KLI    S   SRCGRTDKGV+A  QV+G+RVRS LP+                                                                                    D  L  VA + D   G+ + +  P+    T  ELDYA  +NR LP DIR     P P  FSARF C  R YRYFF  + LD+EKMR GA KLVG HD+RNFC++D T+  +F R ++  EIL   + +    S+                                               +I GQAFLWH VRC++ +LF IG  +E P IVD LL+IA  P KP Y +AS+ +L L DC F  ++F Y P AL  +   +   W  AA+K A L + L+ + + +V
Sbjct:  419 KKPK--REFQISKYAQRLVAIKFLYIGDKYDGFARQDHTE-ETIERYVLSALQHTKLIESIDSCEYSRCGRTDKGVSAFGQVIGIRVRSNLPV------------------------------------------------------------------------------------DAELLDVATIDDVRPGERFRVKMPNGGERTLTELDYAVHINRALPDDIRVYAVVPAPASFSARFDCRERMYRYFFVRKTLDIEKMRLGAAKLVGTHDYRNFCRID-TSKHTFERKIRSFEILACEDHETKEPSQ------------------------------------QMFRFEVSALTEIYGQAFLWHQVRCMVQVLFLIGEGKEDPEIVDRLLDIAATPRKPQYDMASDRSLCLQDCLFDNVEFEYSPLALHHVHEHVSSLWEQAAIKTAMLRSDLDMLEQFQV 759          
BLAST of NO19G01480 vs. NCBI_GenBank
Match: OAQ25366.1 (tRNA pseudouridine synthase [Mortierella elongata AG-77])

HSP 1 Score: 218.4 bits (555), Expect = 8.200e-53
Identity = 147/463 (31.75%), Postives = 210/463 (45.36%), Query Frame = 0
Query:  108 KPKRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIWSIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVT-TVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPS-------ALFRLWTELRMGWGAAAVKLARLNNHLEYVGE 563
            K K  R FDFSK+A R +A + +Y G PY G AS G +EI+TVE++L  A +  ++I D      SRCGRTD+GV+ L QV+ L VRSALP S    + S    D   P T    D              L Q +     G                         V   +G          +    DG ++          EL Y  ++NR+LPPDIR + WAPV   F+ARF C+ R Y+YFF    +D+EKMR  + K +G HDFRNFCK D + T++++ R + E  I  V E  +      +                                            L ++G AFLWH VRC+MS+L ++G+  E P ++D L+++   PAKP+Y +AS+  LVL+DCHF  +++ YQ            RL+  +   W     K    +  LE + +
Sbjct:  113 KRKDRRPFDFSKYAKRHVAFRVAYFGWPYGGFASQGMNEIKTVESELFNAMLAARIIEDPLQCNYSRCGRTDRGVSGLGQVIALTVRSALPKSSPHVIRS--EGDGFVPETKDLADEG------------LTQEELEAKAG-------------------------VYWKRG----------IKRNKDGSVFG---------ELAYLNIINRLLPPDIRIVAWAPVAEDFNARFHCSWRQYKYFFPKGIIDIEKMRAASVKFLGTHDFRNFCKYDASKTIENYDRTIHEISIETVPEHNFPAKKSRE-----------------------------------------FYQLTLKGSAFLWHQVRCMMSVLLSVGQGLEEPEVIDQLMDVQQCPAKPNYDMASDLPLVLYDCHFENIEWQYQTEVDLVNDITPLRLYRAMEDQWSCYVTKSLMYSRMLEQLDQ 476          
BLAST of NO19G01480 vs. NCBI_GenBank
Match: XP_021875273.1 (pseudouridine synthase [Lobosporangium transversale] >ORY94331.1 pseudouridine synthase [Lobosporangium transversale])

HSP 1 Score: 217.2 bits (552), Expect = 1.800e-52
Identity = 140/422 (33.18%), Postives = 204/422 (48.34%), Query Frame = 0
Query:  108 KPKRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIWSIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVT-TVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQ 529
            K K  R FDFSK+A R +A + +Y G PY G AS G  +++TVE++L  A +  ++I D  +   SRCGRTD+GV+ L QV+ L VRSALP       SSP+ +        + GD  D  A    +   L Q +     G                                       N V    DG ++          EL Y  ++NR+LPPDIR + WAPVP  F+ARF CA R Y+YFF    +D+++MR  A K +G HDFRNFCK D + T+ ++ R +    I  V E ++ + ++G+                                            L ++G AFLWH VRC+M++LF +G+  E P ++D +++I   PAKP+Y +AS+  LV +DCHF  +++ YQ
Sbjct:  106 KRKDRRPFDFSKYAKRHVAFKIAYFGWPYAGFASQGAVDVKTVESELFNALLAARIIEDPQNCNYSRCGRTDRGVSGLGQVIALTVRSALP------KSSPYVI-------RSEGDGYDPKAEEEKS-EGLTQEELESKAGVYYK-----------------------------------NGVKRNKDGSVFG---------ELAYLNIVNRLLPPDIRIVAWAPVPEDFNARFHCAWREYKYFFPKGIIDIDRMRTAATKFLGTHDFRNFCKYDSSKTIVNYDRTIMAISIDTVPEHEFPM-TQGREF----------------------------------------YQLTLRGSAFLWHQVRCMMAVLFAVGQGLEEPEVIDQMMDIKQCPAKPNYDMASDLPLVFYDCHFENVEWQYQ 428          
BLAST of NO19G01480 vs. NCBI_GenBank
Match: KFH64929.1 (hypothetical protein MVEG_09657 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 216.5 bits (550), Expect = 3.100e-52
Identity = 144/442 (32.58%), Postives = 209/442 (47.29%), Query Frame = 0
Query:   91 RPPPPLLKNPKLPPHPQKPKRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSP---FTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIWSIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVT-TVQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQ 529
            RP  P   N   P    + K  R FDFSK+A R +A + +Y G PY G AS G +EI+TVE+++  A +  ++I D  +   SRCGRTD+GV+ L QV+ L VRS+LP S    + S    +  + P P                     L Q +    +G                         V   +G          +    DG ++          EL Y  ++NR+LPPDIR + WAPV   F+ARF C+ R Y+YFF    +D+E+MR  A K +G HDFRNFCK D + T++++ R + E  I  V E ++   S+G                                             L ++G AFLWH VRC+M++LF +G+  E P I+D ++++   PAKP+Y +AS+  LVL+DCHF  L++ YQ
Sbjct:   92 RPESP--SNNYSPIETPRKKDRRPFDFSKYAKRHVAFRVAYFGWPYGGFASQGVNEIKTVESEIFNALMAARIIDDPLTCNYSRCGRTDRGVSGLGQVIALTVRSSLPKSSPHVIRSEGDGYVPETPNPDGPV-----------------LTQEEQEAKEG-------------------------VYWKRG----------IKRNKDGSVFG---------ELAYLNIINRLLPPDIRIVAWAPVSEDFNARFHCSWRQYKYFFPKGIIDIERMRTAAVKFLGTHDFRNFCKYDASKTIENYDRTIHEISIEPVPEHEFA--SRGS---------------------------------------NEFYQLTLKGSAFLWHQVRCMMAVLFCVGQGLEEPDIIDKMMDLKQCPAKPNYDMASDLPLVLYDCHFENLEWQYQ 429          
BLAST of NO19G01480 vs. NCBI_GenBank
Match: XP_006140669.1 (PREDICTED: tRNA pseudouridine(38/39) synthase isoform X2 [Tupaia chinensis] >XP_006140671.1 PREDICTED: tRNA pseudouridine(38/39) synthase isoform X2 [Tupaia chinensis] >ELW72237.1 tRNA pseudouridine synthase 3 [Tupaia chinensis])

HSP 1 Score: 216.1 bits (549), Expect = 4.100e-52
Identity = 147/450 (32.67%), Postives = 193/450 (42.89%), Query Frame = 0
Query:  110 KRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIWSIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVTT-VQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPSALFRLWTELRMGWGAAAVKLARLNNHLE 559
            K  R FDFS H  R +AL+ +Y G  Y G AS  E+   TVE QL  A  K +L+  R ++   RCGRTD+GV+A  QV+ L +RS LP                                                                               +G+  +D  +                 + T+ E+ Y  +LNRVLPPDIR L WAPV PGFSARF C  RTYRYFF    LD+E M   A+K VG HDFRNFCKMDV   V +F R V  A++  VG+      S G+                                             Q+ GQAFL+H VRC+M++LF IG+  E P ++D+LL+I   P KP Y +A E  LVL+DC F  +++ Y   A     T L+  W   AV+   L + L+
Sbjct:   50 KAKRAFDFSAHGRRHVALRIAYLGWGYQGFASQ-ENTSNTVEEQLFEALTKTRLVESRQTSNYHRCGRTDRGVSAFGQVISLDLRSQLP-------------------------------------------------------------------------------RGRGSEDVHVE---------------GTDTAQEIRYTHILNRVLPPDIRVLAWAPVEPGFSARFSCLERTYRYFFPRADLDVESMNSAAQKYVGTHDFRNFCKMDVANGVVNFQRTVLSAQVQRVGQ------SPGE---------------------------------HTQQAPFQLCQFQVTGQAFLYHQVRCMMAVLFLIGQGLERPEVIDELLDIESNPQKPQYSMAVEFPLVLYDCTFENIRWVYDREAQELNITHLQQLWAKHAVQAHMLYSLLQ 365          
BLAST of NO19G01480 vs. NCBI_GenBank
Match: XP_006140667.1 (PREDICTED: tRNA pseudouridine(38/39) synthase isoform X1 [Tupaia chinensis])

HSP 1 Score: 216.1 bits (549), Expect = 4.100e-52
Identity = 147/450 (32.67%), Postives = 193/450 (42.89%), Query Frame = 0
Query:  110 KRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETVEAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLSDTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCXXXXXXXXXXXXXXXXXXXXXXXXVNEAKGQDLKDTSLNPVALLADGDIWSIPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRYFFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVTT-VQSFVRLVKEAEILEVGEWKWVIDSKGKPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYPAKPHYPLASEHALVLHDCHFAKLKFTYQPSALFRLWTELRMGWGAAAVKLARLNNHLE 559
            K  R FDFS H  R +AL+ +Y G  Y G AS  E+   TVE QL  A  K +L+  R ++   RCGRTD+GV+A  QV+ L +RS LP                                                                               +G+  +D  +                 + T+ E+ Y  +LNRVLPPDIR L WAPV PGFSARF C  RTYRYFF    LD+E M   A+K VG HDFRNFCKMDV   V +F R V  A++  VG+      S G+                                             Q+ GQAFL+H VRC+M++LF IG+  E P ++D+LL+I   P KP Y +A E  LVL+DC F  +++ Y   A     T L+  W   AV+   L + L+
Sbjct:   85 KAKRAFDFSAHGRRHVALRIAYLGWGYQGFASQ-ENTSNTVEEQLFEALTKTRLVESRQTSNYHRCGRTDRGVSAFGQVISLDLRSQLP-------------------------------------------------------------------------------RGRGSEDVHVE---------------GTDTAQEIRYTHILNRVLPPDIRVLAWAPVEPGFSARFSCLERTYRYFFPRADLDVESMNSAAQKYVGTHDFRNFCKMDVANGVVNFQRTVLSAQVQRVGQ------SPGE---------------------------------HTQQAPFQLCQFQVTGQAFLYHQVRCMMAVLFLIGQGLERPEVIDELLDIESNPQKPQYSMAVEFPLVLYDCTFENIRWVYDREAQELNITHLQQLWAKHAVQAHMLYSLLQ 400          
The following BLAST results are available for this feature:
BLAST of NO19G01480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23621.11.000e-17552.06trna pseudouridine synthase 3 [Nannochloropsis gad... [more]
GAX28157.11.300e-5830.63tRNA pseudouridine38/39 synthase [Fistulifera sola... [more]
GAX25943.11.100e-5730.25tRNA pseudouridine38/39 synthase [Fistulifera sola... [more]
OQS00573.11.900e-5431.14tRNA pseudouridine synthase [Achlya hypogyna][more]
GAY01918.16.300e-5333.12tRNA pseudouridine synthase, putative [Pythium ins... [more]
OAQ25366.18.200e-5331.75tRNA pseudouridine synthase [Mortierella elongata ... [more]
XP_021875273.11.800e-5233.18pseudouridine synthase [Lobosporangium transversal... [more]
KFH64929.13.100e-5232.58hypothetical protein MVEG_09657 [Mortierella verti... [more]
XP_006140669.14.100e-5232.67PREDICTED: tRNA pseudouridine(38/39) synthase isof... [more]
XP_006140667.14.100e-5232.67PREDICTED: tRNA pseudouridine(38/39) synthase isof... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL013nonsL013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR037ngnoR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004461NSK004461Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01480.1NO19G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|653811gene_7543Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100137g19gene6828Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01480.1NO19G01480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01480 ID=NO19G01480|Name=NO19G01480|organism=Nannochloropsis oceanica|type=gene|length=4383bp
TCCTCGTCTCTGGTGTTTTCTTCTTCTTTTGATCACCAGTGCTTGGTTTT
GATCGTATGTAAAATTGTACATACCCAAACCTCTGACTCCACATACATAC
ACACGTATATATAAACACACACCACACACACACAATTTTCTCTCTCAATC
AAACCCACCGACCTGCAAGAATAACGACAAATATCTTTCGCTTGCCTTGC
TAGCGCCCGGATATCAGATATCTTTAAACCCTCCTCTTCAATCTTGTAAT
TTTCGTATGAGTCAGTTTCTTATGTACTCTTATGCGCTTGTCTCCCCTTC
TTTACTTCCCTTGTCTTTGTCTAACTTATAGTTACCCTTGCTCTCGATTT
GTGCCATTTCACCGTTGCCGCTCCTGCTTCCCCTCTTCATCCTCTCCCTC
ACTCTCACATTTATACCCTTTCAGCGCCTCCCCTCCGTCGAGTCTGATCA
AGGCGTACTACATATCCCATCCTCCTCGTCGCCCAACTCCAGCAACGGAT
CCCTCAACGATGTTTTCCCCGCGATTCGCACCTTCTTCGCCTTTTCCCAC
TTTCCATAGCTCTGTCGAGTGTGTTGCTGCGAGTGGTTATGGTATTTCTT
GCTCGAGCAAGCTGCTGTAGCGCTTTGTCGTGCTGCCCCACGGCGGATGA
TGATGAAGGCGATTCCACTGAGGCACAAAACGCCTGCAATAGTGACAAGT
ATTGTGGCCCACACAGGGAAAATCGACCCACCCCCATCATTTTGGTATTG
GTCGTCCTTCGCGCGCAAGCCCATGACGACCCCCGAGGCTACCTCGAAGG
TGTAGGAGCAGTTGAATCGCTCTCCTTTTGACTTCAAATGACGCACTACC
AACATGCTATTGGATCCCATTGTGACATTGAAGGTTCGTGGAGGTGTCGT
TCCTGGGAAGGTCCAGATAGCCGAGTTATATGCGGCAAGGTAGACGCCTA
GACCACGGGGACAGTCACAACGTTTCTTTGTGTTCGAACGAACAGGGACG
GATGGCGACATTGGGATGGGGGCGACGACAGAGGAGATGTTCAACAAAAA
ACTAAGTTGATTGATCTTCAGCTGCGCAAGACACTGCCCGAAGCACGTCT
TACTCAGCTGTGTGAGACAGCCGGCAGGAACCGCGTCCGTTCCGTTGCGG
TCATAGCTCGGAGCCAGCGTGCTTGACAAGCGGATGGTGCCTTCTGCTAG
GGGGAGCCCGCCCCCGGTGGGAAGATTCAGGTCGTGCCGCGCAAGCTCCT
CCTTCAGCGCCACCAAGAGAGGGTCGTCATCGCCGCTGGTGGTGGTGGTA
TGTGGCATTGCCACAATGAAGGTCTGGTGTAGTATAATGTAGATTTGAGC
AAGGAGCGTGAAGGGGGAGGAGCTAAAGACTTACCAGAAGAAGGAAAGCC
AGCAGCAGCGGGAGCAGAAGAGACAACGGCCTCATCCCTTGCCTTGGTGA
TATGCCTGTGTGGTTTTCGGTAACGTATGAATGGTGTGGGGCGTGGGTGT
GCGTAAAGGTCGAATAAGAGCGCAACCGCTCCCAGCTTGGAATTACTGGT
TCGGTTCCGGGGAAAGCTGCAAGCAACGTCACACACGCGCATGAATTGAT
CTTTTTATAAAGTAAGCTCATGTCCAGTGCACACATTTACACAAATAAAG
GCGCTAGTGATGAAGCACGCAGTAGCAGGAGCTGACATCGGTTGTCGTGC
GGAAGGACAAGCGGCTCCCACTTGTACATCCAATAAATACGCTCCTCCGC
AATCACCATCAGCATCATCAAACGGGCATGCTTCCATGGACTCTCTGCCA
CCTCCACCGCTACAGCAAGAGCAGCTCCAGCTACAGGATGTCACGCGGGA
ACAGCTCTGCCGTGTAGTGCAGCACATCATGGAGCAGGACGGAGGGAAAG
gtgcgtccgtgctgcgcgcactttcctctcctccccactctctctctaac
cgatctcccaagcccctccccttccacaccacaaaaacacaccatcaacc
gtagtcaatgcttcagcgcatttacatcggcactcatcttgttcaaccta
tctccccttctaccaccgcacacacacactttctctttctctctcacagC
TCTGGTCCATCAGGCCCTCGACATGGTTCGTCCCCCTCCACCTCTCCTCA
AAAACCCAAAACTCCCACCACATCCTCAAAAACCTAAGCGTACCCGTCAA
TTTGATTTCTCCAAACATGCCACCCGATTTATTGCCTTGCAGTTTTCCTA
TGAAGGTGCTCCTTACAACGGATTGGCCTCGAATGGAGAAGACGAGATAG
AGACCGTGGAGGCCCAACTACTCATGGCATGCATCAAACTCAAGCTCATT
CCCGACAGGGCCTCTGCATGTGTCTCCCGCTGTGGACGGACTGATAAAGG
TGTGAACGCCCTAAGACAAGTAGTAGGCCTAAGGGTGCGTTCTGCCTTGC
CCTTATCGGACACTTCTTCGGTTTCTTCTCCTTTCACCGTTGATGCTCCT
GCGCCTACCACTACCGCAGCTGGTGATGCTGATGATGCTACAGCAATGGC
CACATCTACTTGCACACCACTCGTCCAGTACCAAAGCAGCTGCAGCGATG
GTTGCATCACCACCTCCTCCTCCTCCTCCTCCACCACCACCACCACCACC
ACCACCACCACCACCCATAACAATGACGTTAACGAAGCAAAAGGACAAGA
CCTGAAAGACACGTCGCTAAACCCGGTCGCTCTTCTCGCCGATGGCGACA
TCTGGTCCATTCCATATCCAAGCACTACCTCCCACGAGCTCGACTATGCC
ACCCTACTCAACCGCGTTCTCCCTCCCGACATTCGCGCCTTGGGATGGGC
CCCCGTACCCCCCGGGTTCTCTGCCCGTTTTTGCTGTGCCCATCGGACGT
ACCGTTACTTTTTCGACGGCGAAGGCTTGGACCTGGAGAAAATGAGGGAG
GGGGCGAGGAAGCTGGTCGGACAGCACGACTTTCGCAATTTCTGTAAGAT
GGACGTGACGACGGTGCAGTCCTTCGTGAGATTAGTCAAGGAAGCAGAGA
TTTTGGAAGTTGGAGAATGGAAGTGGGTGATTGATTCGAAGGGAAAACCT
CTCTCCAGCAGCAGCAGTAGCGTCAGCAAAGGTAGAAGCCCCAGCAGTAG
TCGCAGCAGTAGCAACCCCACCGCCTCCTCTTCCTCCTCTTCCTCCCCCC
CTCCCTCCTCCCACAATAAACTCTGCTGCCTTCAAATTCAAGGGCAAGCC
TTCCTCTGGCATATGGTGCGCTGTATCATGTCCATCCTTTTCACCATCGG
CCGAAAACAAGAATCCCCGGGGATTGTCGACGACCTCCTGAACATTGCTC
TCTACCCCGCGAAGCCTCACTACCCCCTTGCCTCGGAACACGCCTTAGTT
TTGCACGATTGCCATTTTGCTAAATTGAAGTTCACCTATCAGCCCTCTGC
GTTGTTTCGCCTTTGGACAGAGCTCCGAATGGGATGGGGGGCAGCAGCTG
TAAAGCTTGCGAGATTGAACAATCACTTGGAGTATGTGGGTGAGCTAGAG
GTAAGCAGAAACGAGCTTGAGCAGTGGGCGGACACTGAGTTGAAGGAAGG
GAGGTTTCAACAGGGGCAGCAGCGTCGACAGCAGCAGAATCAGGGGGAGG
GAAAGAGGAGGAAGAAGGAGGGCGAGGGAGGGAGGGTGGGAGAAGTGGGG
GGAGAGGATATAAGTGTGGATGGGTCGGGGAAGGGGAGCGATGATGGTGA
TTGCAGCAACGACGACCGGGGAAAGGAGGAAGAGGAGGAAATGGTGATGA
TTAAATGGCGCGATGCTCTTGCCTTCTTATCCACCCGGGGCATTGTGCCT
GATTTGGAGGAGAGCAAGAAGAGGAAGGGGATTTGGACTCCTTACATCCC
TTTGAGAGACCGGCCATTGGGCAAGAGCTATGAAGAGGCTGTCGCTGAAA
TGGGAGCGAAGAAGAGGGAACTTTACAAACAGGCGCAAAAGAAGAGGGAG
ACGGCTGAGAGGAAGGGGGGAATGGCCGATTTTTTTTTAAGGATGCGCGG
GACTACCCCCACAGTGAGTAGTAGCCGCAGTAGCAATAGTAGTACCATTA
GCAGCAATAGTAGTACCATTAGCAGCAAGTGCAGCAGCAGTGGTGGTAGT
AGTAATTGTAGAAGCAGTAGTGGAAAATGTGGTAATATTAGTGATCTGCA
GCGAGTGGACATGTCAGCCATATATCGGCCGGAGGTAGGGGAGAGGAAGC
AGGGAGGGAGGGAGGGTGAAAAGGTGGGCTTGCAAAATTAGACCGACCAG
AATAGTCGAGGTAGAGGGAAGAAGAAGGAGGAGGAGAAGAGAGAGGGGGA
GTGAGAAGAAAGAAGAAGAAGAAGGAGAAGGGA
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protein sequence of NO19G01480.1

>NO19G01480.1-protein ID=NO19G01480.1-protein|Name=NO19G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=811bp
MKHAVAGADIGCRAEGQAAPTCTSNKYAPPQSPSASSNGHASMDSLPPPP
LQQEQLQLQDVTREQLCRVVQHIMEQDGGKALVHQALDMVRPPPPLLKNP
KLPPHPQKPKRTRQFDFSKHATRFIALQFSYEGAPYNGLASNGEDEIETV
EAQLLMACIKLKLIPDRASACVSRCGRTDKGVNALRQVVGLRVRSALPLS
DTSSVSSPFTVDAPAPTTTAAGDADDATAMATSTCTPLVQYQSSCSDGCI
TTSSSSSSTTTTTTTTTTTHNNDVNEAKGQDLKDTSLNPVALLADGDIWS
IPYPSTTSHELDYATLLNRVLPPDIRALGWAPVPPGFSARFCCAHRTYRY
FFDGEGLDLEKMREGARKLVGQHDFRNFCKMDVTTVQSFVRLVKEAEILE
VGEWKWVIDSKGKPLSSSSSSVSKGRSPSSSRSSSNPTASSSSSSSPPPS
SHNKLCCLQIQGQAFLWHMVRCIMSILFTIGRKQESPGIVDDLLNIALYP
AKPHYPLASEHALVLHDCHFAKLKFTYQPSALFRLWTELRMGWGAAAVKL
ARLNNHLEYVGELEVSRNELEQWADTELKEGRFQQGQQRRQQQNQGEGKR
RKKEGEGGRVGEVGGEDISVDGSGKGSDDGDCSNDDRGKEEEEEMVMIKW
RDALAFLSTRGIVPDLEESKKRKGIWTPYIPLRDRPLGKSYEEAVAEMGA
KKRELYKQAQKKRETAERKGGMADFFLRMRGTTPTVSSSRSSNSSTISSN
SSTISSKCSSSGGSSNCRSSSGKCGNISDLQRVDMSAIYRPEVGERKQGG
REGEKVGLQN*
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Synonyms
Publications