NO19G01400, NO19G01400 (gene) Nannochloropsis oceanica

Overview
NameNO19G01400
Unique NameNO19G01400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2815
Alignment locationchr19:431677..434491 -

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Properties
Property NameValue
DescriptionPas-domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:431677..434491 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom
IPR000014PAS
Homology
BLAST of NO19G01400 vs. NCBI_GenBank
Match: EWM23637.1 (pas-domain protein [Nannochloropsis gaditana])

HSP 1 Score: 206.8 bits (525), Expect = 2.300e-49
Identity = 138/258 (53.49%), Postives = 165/258 (63.95%), Query Frame = 0
Query:  512 REQKRSLKISQQIGHLKTVLEKEGRKVKKNSKMAILLSVEDYIKELEEEVAGMTMRWEGKEEGREDEEAEYGGFGAGDGIXXXXXXXXXXXXXXXXXXXXXWNGVSGCARVVTGVREGAEEREVASGVGYQLLFKQVSTPLAVASVDGKLIDANVRFEMASGYSKEELLRLTFFNLVSPEDLQTTFAAIARMINQ--GGEEDEDERVGRREEELLKLTKRAVPKGRAGG-EEGGLLLYITISLVRQHGQNPSFFQCSL 767
            REQKRSLKISQQIGHLK++LE+EGRKVKKNSKMAILLSVEDYIKELEE                                XXXX                  NG S     V       E++EVA GVGY  LFKQVSTPLAVASV+G+ IDANVRFEMA+GY+K EL RLTFFNLV+PE+LQ TFAA+ARM+NQ  GGEE+++      + ++L+LT+RA+PK   GG  +    L+ITISLV+    + +FFQCSL
Sbjct:   50 REQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-----------------NGRSESDLSVATATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKE------DSKMLRLTRRALPKVGIGGLGQEAQNLHITISLVKPQEDSMAFFQCSL 284          
BLAST of NO19G01400 vs. NCBI_GenBank
Match: XP_002289654.1 (pas-domain protein [Thalassiosira pseudonana CCMP1335] >EED93191.1 pas-domain protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 78.2 bits (191), Expect = 1.300e-10
Identity = 67/222 (30.18%), Postives = 101/222 (45.50%), Query Frame = 0
Query:  504 KRKQDRNAREQKRSLKISQQIGHLKTVLEKEGRKVKKNSKMAILLSVEDYIKELEEEVAGMTMRWEGKEEGREDEEAEYGGFGAGDGIXXXXXXXXXXXXXXXXXXXXXWNGVSGCARVVTGVREGAEEREVASGVGYQLLFKQVSTPLAVASVDGKLIDANVRFEMASGYSKEELLRLTFFNLVSPEDLQTTFAAIARMI-----NQGGEEDEDERVGRRE 721
            +R+ +RN RE++RS +I+ Q+  L+ +L++ G  + KN+K  +L    +YI+ L+E    M+M  EG +       A   G  AG                             G A+  T     A+  E      Y L+FK     +AVAS+ G L+D N  F   +G S EEL  +T FN+V P DL      I+RMI     NQ G+++ +    R E
Sbjct:  386 ERRLERNQREKERSNRIASQVDTLRCLLQRGGLFIPKNTKSTVLNEASNYIRTLQERQQLMSMEMEGLKRQLVVAVALKNGGEAG-----------------------------GAAQQATSQEATADSAE----QDYHLIFKNTMAGMAVASMGGALLDCNAAFHGETGLSSEELKGMTVFNIVHPTDLSRALDLISRMIDCGYSNQNGDDNTNSTSLRGE 574          
BLAST of NO19G01400 vs. NCBI_GenBank
Match: EJK65393.1 (hypothetical protein THAOC_13749 [Thalassiosira oceanica])

HSP 1 Score: 74.7 bits (182), Expect = 1.400e-9
Identity = 64/217 (29.49%), Postives = 103/217 (47.47%), Query Frame = 0
Query:  504 KRKQDRNAREQKRSLKISQQIGHLKTVLEKEGRKVKKNSKMAILLSVEDYIKELEEEVAGMTMRWEGKEEGREDEEAEYGGFGAGDGIXXXXXXXXXXXXXXXXXXXXXWNGVSGCARV------VTGVREGAEEREVASGVGYQLLFKQVSTPLAVASVDGKLIDANVRFEMASGYSKEELLRLTFFNLVSPEDLQTTFAAIARMIN-QGGEEDED 714
            +R+++RN RE++RSLKI+QQI  L+ +L   G  V K +K  IL    +YI+ L++      +     E+G+  +E +  G GA                          NG     +        +G+ +   +RE      Y+ +F   S  +A+A++ G  ID N+ F   S YSK+EL  +T FN+ S EDLQ  F  ++++I    G+ D D
Sbjct:   96 ERREERNLREKERSLKITQQIHELRNLLSLGGVIVPKGTKSTILTEAANYIRLLQQHQVRSEV-----EKGQLVKEVQRIGSGA-------------------IQQNAAQNGALSQGQAQQPQAPSSGIADTLGDRE------YRCVFNSCSVGMAIATMGGSFIDCNLAFTQLSSYSKQELKAMTIFNITSREDLQGAFDMMSQLITPPSGQLDAD 282          
BLAST of NO19G01400 vs. NCBI_GenBank
Match: XP_002286295.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95936.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 73.9 bits (180), Expect = 2.400e-9
Identity = 67/254 (26.38%), Postives = 117/254 (46.06%), Query Frame = 0
Query:  505 RKQDRNAREQKRSLKISQQIGHLKTVLEKEGRKVKKNSKMAILLSVEDYIKELEEEVAGMTMRWEGKEEGREDEEAEYGGFGAGDGIXXXXXXXXXXXXXXXXXXXXXWNGVSGCARVVTGVREGAEEREVASGVG-YQLLFKQVSTPLAVASVDGKLIDANVRFEMASGYSKEELLRLTFFNLVSPEDLQTTFAAIARMINQGGEEDEDERVGRREEELLKLTKRAVPKGRAGGEEGGLLLYITISLVR-QHG 757
            ++Q+RNARE++RS +I++QI  L+++L + G  V K +K ++L    +YI  L+++     ++WE   +    +  E G       I                      N ++   +  +GV           G   Y+ +F   S  +A+AS+ G  ID N  F   S YSKEE+  +T FN+ +  DLQ  F  I++MI    + +  +   + +++   +  R   K R         L ++ISL+R +HG
Sbjct:  594 KRQERNAREKERSCRIAKQIDDLRSLLSRGGVVVAKGTKSSVLAEAANYINVLQQQ----QVQWEMDRQALVRQMQEVGATPDMAQIQQQGVMPMNP------------NSIAQVQQAASGVPGAMTMNPSTMGPNDYKFVFNNSSVGMAIASMGGAFIDCNENFCQLSEYSKEEVCAMTIFNMTARSDLQHAFELISQMITPALDSNAAQLQQQAQDKAGTIVLRGAMKTRND-------LGLSISLIRGEHG 824          
BLAST of NO19G01400 vs. NCBI_GenBank
Match: ALR84570.1 (bHLH transcription factor 1 [Nannochloropsis salina])

HSP 1 Score: 70.9 bits (172), Expect = 2.000e-8
Identity = 84/308 (27.27%), Postives = 136/308 (44.16%), Query Frame = 0
Query:  474 VADARGAGADTTNVGGLPSSGAEGGKV--------------SNGKRKQDRNAREQKRSLKISQQIGHLKTVLEKEGRKVKKNSKMAILLSVEDYIKELEEEVAGMTMRWEGKEEGREDEEAEYGGFG-AGDGIXXXXXXXXXXXXXXXXXXXXXWNGVSGCARVVTGVREGAEEREVASGVGYQLLFKQVSTPLAVASVDGKLIDANVRFEMASGYSKEELLRLTFFNLVSPEDLQTTFAAIARMINQGGEEDEDERVGRREEELLKLTKRAVPKGRAGGEEGGLLLYITISLVRQHGQNPSFFQCSL 767
            +   R A +D    G     G  G +V              S+ ++K+ RN REQ+R+  I+ QI  LK VLE     ++  SK  IL + ++YI+ L +    + ++ +    G       +  +  AG G+          XXXXXXXXXXX                   +RE+   + +  +F+    P+AV S+DG+L+  NV F   +GY+ ++L  +T F L +PE L+  F +IAR+++    ++++               RA P    G +E  +LL    SLVR        F C +
Sbjct:  336 MGSGRTAASDAFCAGSAAKRGTSGAQVMGTSERGMQEEDGMSDERKKRLRNEREQRRAHLITDQIDSLKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLDLKHKLSGGGAGSPMTGFCKYNKAGIGV------EGQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQREIV--LDFSEIFRSSHVPMAVVSIDGRLLQCNVEFSRVTGYTNDKLAGVTLFGLAAPECLEQLFKSIARLLSTAALDEKNPAY------FATAAARATPFSHPGYKEANILL----SLVRDEEHRARAFHCCI 625          
BLAST of NO19G01400 vs. NCBI_GenBank
Match: EJK64575.1 (hypothetical protein THAOC_14684 [Thalassiosira oceanica])

HSP 1 Score: 66.6 bits (161), Expect = 3.800e-7
Identity = 63/254 (24.80%), Postives = 114/254 (44.88%), Query Frame = 0
Query:  508 DRNAREQKRSLKISQQIGHLKTVLEKEGRKVKKNSKMAILLSVEDYIKELEEEVAGMTMRWEGKEEG--REDEEAEYGGFGAGDGIXXXXXXXXXXXXXXXXXXXXXWNGVSGCARVVTGVREGAEEREVASGVG---YQLLFKQVSTPLAVASVDGKLIDANVRFEMASGYSKEELLRLTFFNLVSPEDLQTTFAAIARMINQGGEEDEDERVGRREEELLKLTKRAVPKGRAGGEEGGLLLYITISLVRQHG 757
            +RNARE++RS KI++QI  L+ +L + G  V K +K+ +L    +YI  L+++     ++WE   +   ++ ++ +     A  G                         ++G    +            AS +    Y+ +F+  +  +A+A++ G  +D N  F   S Y+KEE+  +T FN+ S  DLQ  F  I++MI    + D+D      ++    +  R   K R+        L ++ISL+R  G
Sbjct:    2 ERNAREKERSCKIARQIDELRALLSRGGVTVTKGTKITVLAEAANYINLLQQQ----QVQWEMDRQSLVQQMQQMQANAQSAIQG--------------------QTGRAITGRTNPLNPTPNPLLPSSSASAISPDDYKHIFESSTVGMAIATLGGAFVDCNSIFSQLSEYTKEEVAVMTIFNMTSRADLQHAFDLISQMITPSDDADKDS----SDDGGQSIVLRGAMKSRSD-------LGLSISLIRGEG 220          
The following BLAST results are available for this feature:
BLAST of NO19G01400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM23637.12.300e-4953.49pas-domain protein [Nannochloropsis gaditana][more]
XP_002289654.11.300e-1030.18pas-domain protein [Thalassiosira pseudonana CCMP1... [more]
EJK65393.11.400e-929.49hypothetical protein THAOC_13749 [Thalassiosira oc... [more]
XP_002286295.12.400e-926.38predicted protein [Thalassiosira pseudonana CCMP13... [more]
ALR84570.12.000e-827.27bHLH transcription factor 1 [Nannochloropsis salin... [more]
EJK64575.13.800e-724.80hypothetical protein THAOC_14684 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL013nonsL013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR037ngnoR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004469NSK004469Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01400.1NO19G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|159083gene_7535Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100165g4gene6822Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01400.1NO19G01400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01400 ID=NO19G01400|Name=NO19G01400|organism=Nannochloropsis oceanica|type=gene|length=2815bp
ATGTGTGAATGCAATGCTTGCCAAGGGCTGTGGGGGATCAGCTCCCCTGC
CAGCTGgtcaatttgtggtcggcgcgtggtcttaaagtagtcgtgtacac
gtgctcctccttgttcctccctaccccctcccatgtgtcttttggcctgc
cccttcttactcctccctcgcactctttcctggccccatctccaccccta
tagACAAGCATCTACCCACATAAATACACTCGGGCGGCGTCGTGACGCGG
TCCAAGTGCAGTTTGTGGTCTCAAAGgtgagaggagcaaaggcaagggtt
tgggctcttgtaagttttccgggcctcttttcacctcgtgcatgtgtatc
agtccaccagcacataaatttgatgtgttgtgggtatattaatgtttgat
atggggtgttgacggcgggaggcttcacatcttgggcgaagtgggtcatg
tcccctctggtacccatctattgaatgatctgcctgtgcgccctccgcta
ggctccctcgctccctccctcgctcccacacagctgcaagccgcaagcat
atacctacatgtgcaacaaagaaagtctttcgttttaacttatcccctcc
tacctcgtctcccttccgccctccatctatccctccctagACATCGACCG
AACAACTACAAATGGATCCGACCACGGAAGACATTTTTTTCAGCGCCGAA
ACATTTGAACATACTTCCTCCACCTTTACTACTGCCCGTGGCGGTATGCA
TGGAGGAAAACTGAACAAGCGGCAGCAGCAGCAGCAGCAGCAGCAGAGAA
GGAGCGACCGCAGGCAGCACCAGCAGATGGATGATGAGGACGAGGACGAG
GACGATGGGGAATTGTCTGATATGTTATTGAGCGACATTGACTCTGGGAT
ATTTTTCAATGAGGCGAGCGTCGAATTCTTTGGAGGGGGAGGGGGAGGGG
GGGAGGCAGGAGTACAAAAATATCACCAGGGAGGAGAGGAGGGTAGTGGC
ATCAGCACCAGCAAGGAGCAGCAGCACCAGCAACAGGAGGACGGCGAGTA
TTCCTCCCCAGTGCCTTCCTTCCCTCATGCCCTGCTTTCCTCCAAAAATG
TCAGTTCCCTCCCGAGTACGGTTAACAGCGGGCTTTCTTCCTTCCTTGCC
GCTGGCCCTCCTCTCTGGAAACAGCCCGCGCCGGGCGTTTCGCACCACTA
TCAGCAGCAGGAGGAGAAGCAGCAGCAGCAGCACTTCGGAAGTCAATTCC
AGCAGTCGCAGCAATACAAGCAGCTGCTCGAGCCCCCGCAGCAACATCTC
CAGCAGCGGCAACAGCTCCAGCTCCAGCAGCAGCAGCATCAGCAGTTGAG
TGTCTCTATGCCTGGCTTTGGATTTGAGAAATTTGGGACAGGAAATGCGG
TCGTCGAAGGAATGCAAGGGAAGGAGGGAGGGAGGAGGGGGAAAAGCGAA
AGCCCGATCGGTCTCATGGATGACGCCGCGTCAATTCTCTCGTCGGACGC
CTCCTCCATCTGGGGAATGGACCCACAGGACGGGAGAGGGGGAGGGAGCG
ATAACACCATTCCTCCCCAATACCAGATGAATCATGAAGGGTACAGCGCC
TCGTCGTTGATGATGATGTATCCCAGCCCTGGGAGTAGCTCTGCGAGGAG
CGCGGTGAGTGGGGTGAGCAGCGGGAGCAACAGTGGCCTCAGCAACAACA
GCAATGGTGCTACAACTGCTGGTGCTGTTGTTGTTATTGGTACTGGTGCT
GATGGTGAGACAACTCTGCTTCCGCTGGGTGCAGGGGAGAAGGCGAAAAC
GAAGGCGGCAGGAGGAGGGACGAGGCGGACGCTTGGCGGAGGGAGCAGCA
GCAGTAGTAGCATCGGTGGTGGTAGTGGAAGAGGAGGTGGAGGAGGAGGG
GGAAGGAGTGTGAGAGCACAAGCGCAGGTGGTGGCTGATGCGAGGGGGGC
TGGCGCTGATACGACGAATGTGGGAGGTTTGCCCTCGTCAGGGGCGGAGG
GAGGGAAGGTGTCGAACGGAAAGAGGAAGCAAGATCGTAATGCCAGGGAG
CAGAAGAGGAGTTTGAAAATAAGTCAGCAGATTGGGCACCTGAAGACAGT
GCTAGAGAAGGAAGGGAGGAAGGTGAAGAAGAACAGCAAGATGGCCATTT
TGTTGTCGGTGGAAGATTACATCAAGGAGCTGGAAGAGGAGGTGGCGGGA
ATGACAATGAGGTGGGAAGGAAAGGAGGAAGGGAGGGAAGACGAGGAGGC
AGAATATGGGGGATTTGGGGCCGGGGATGGAATTACCACGGTGGCAGCTG
GAGCGGCGGTGGCAAGGAGAGAGAGGGAGGAGGAAGAGAGGAATAATTGG
AACGGTGTGAGTGGATGTGCAAGGGTGGTGACCGGAGTGCGAGAGGGGGC
GGAGGAGAGGGAGGTGGCGTCGGGGGTGGGGTATCAGTTATTGTTCAAGC
AGGTGAGCACCCCTCTGGCGGTGGCAAGTGTAGACGGTAAGCTGATCGAT
GCGAACGTGAGGTTTGAGATGGCCTCGGGGTATAGCAAAGAGGAGTTGTT
GCGGTTGACCTTCTTTAATCTGGTGTCCCCTGAAGACTTGCAGACGACAT
TCGCAGCAATCGCCCGCATGATCAATCAGGGGGGGGAGGAGGACGAGGAC
GAGAGGGTGGGAAGGAGGGAGGAAGAACTGCTTAAGCTGACGAAACGGGC
GGTGCCCAAGGGAAGGGCGGGCGGGGAAGAGGGAGGATTATTGTTGTACA
TAACGATTTCTTTAGTTAGACAGCATGGGCAGAATCCGTCGTTCTTCCAG
TGCAGTTTGCACTAG
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protein sequence of NO19G01400.1

>NO19G01400.1-protein ID=NO19G01400.1-protein|Name=NO19G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=768bp
MCECNACQGLWGISSPAS*QASTHINTLGRRRDAVQVQFVVSKTSTEQLQ
MDPTTEDIFFSAETFEHTSSTFTTARGGMHGGKLNKRQQQQQQQQRRSDR
RQHQQMDDEDEDEDDGELSDMLLSDIDSGIFFNEASVEFFGGGGGGGEAG
VQKYHQGGEEGSGISTSKEQQHQQQEDGEYSSPVPSFPHALLSSKNVSSL
PSTVNSGLSSFLAAGPPLWKQPAPGVSHHYQQQEEKQQQQHFGSQFQQSQ
QYKQLLEPPQQHLQQRQQLQLQQQQHQQLSVSMPGFGFEKFGTGNAVVEG
MQGKEGGRRGKSESPIGLMDDAASILSSDASSIWGMDPQDGRGGGSDNTI
PPQYQMNHEGYSASSLMMMYPSPGSSSARSAVSGVSSGSNSGLSNNSNGA
TTAGAVVVIGTGADGETTLLPLGAGEKAKTKAAGGGTRRTLGGGSSSSSS
IGGGSGRGGGGGGGRSVRAQAQVVADARGAGADTTNVGGLPSSGAEGGKV
SNGKRKQDRNAREQKRSLKISQQIGHLKTVLEKEGRKVKKNSKMAILLSV
EDYIKELEEEVAGMTMRWEGKEEGREDEEAEYGGFGAGDGITTVAAGAAV
ARREREEEERNNWNGVSGCARVVTGVREGAEEREVASGVGYQLLFKQVST
PLAVASVDGKLIDANVRFEMASGYSKEELLRLTFFNLVSPEDLQTTFAAI
ARMINQGGEEDEDERVGRREEELLKLTKRAVPKGRAGGEEGGLLLYITIS
LVRQHGQNPSFFQCSLH*
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Synonyms
Publications