NO19G01400, NO19G01400 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO19G01400 vs. NCBI_GenBank
Match: EWM23637.1 (pas-domain protein [Nannochloropsis gaditana]) HSP 1 Score: 206.8 bits (525), Expect = 2.300e-49 Identity = 138/258 (53.49%), Postives = 165/258 (63.95%), Query Frame = 0 Query: 512 REQKRSLKISQQIGHLKTVLEKEGRKVKKNSKMAILLSVEDYIKELEEEVAGMTMRWEGKEEGREDEEAEYGGFGAGDGIXXXXXXXXXXXXXXXXXXXXXWNGVSGCARVVTGVREGAEEREVASGVGYQLLFKQVSTPLAVASVDGKLIDANVRFEMASGYSKEELLRLTFFNLVSPEDLQTTFAAIARMINQ--GGEEDEDERVGRREEELLKLTKRAVPKGRAGG-EEGGLLLYITISLVRQHGQNPSFFQCSL 767 REQKRSLKISQQIGHLK++LE+EGRKVKKNSKMAILLSVEDYIKELEE XXXX NG S V E++EVA GVGY LFKQVSTPLAVASV+G+ IDANVRFEMA+GY+K EL RLTFFNLV+PE+LQ TFAA+ARM+NQ GGEE+++ + ++L+LT+RA+PK GG + L+ITISLV+ + +FFQCSL Sbjct: 50 REQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-----------------NGRSESDLSVATATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKE------DSKMLRLTRRALPKVGIGGLGQEAQNLHITISLVKPQEDSMAFFQCSL 284
BLAST of NO19G01400 vs. NCBI_GenBank
Match: XP_002289654.1 (pas-domain protein [Thalassiosira pseudonana CCMP1335] >EED93191.1 pas-domain protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 78.2 bits (191), Expect = 1.300e-10 Identity = 67/222 (30.18%), Postives = 101/222 (45.50%), Query Frame = 0 Query: 504 KRKQDRNAREQKRSLKISQQIGHLKTVLEKEGRKVKKNSKMAILLSVEDYIKELEEEVAGMTMRWEGKEEGREDEEAEYGGFGAGDGIXXXXXXXXXXXXXXXXXXXXXWNGVSGCARVVTGVREGAEEREVASGVGYQLLFKQVSTPLAVASVDGKLIDANVRFEMASGYSKEELLRLTFFNLVSPEDLQTTFAAIARMI-----NQGGEEDEDERVGRRE 721 +R+ +RN RE++RS +I+ Q+ L+ +L++ G + KN+K +L +YI+ L+E M+M EG + A G AG G A+ T A+ E Y L+FK +AVAS+ G L+D N F +G S EEL +T FN+V P DL I+RMI NQ G+++ + R E Sbjct: 386 ERRLERNQREKERSNRIASQVDTLRCLLQRGGLFIPKNTKSTVLNEASNYIRTLQERQQLMSMEMEGLKRQLVVAVALKNGGEAG-----------------------------GAAQQATSQEATADSAE----QDYHLIFKNTMAGMAVASMGGALLDCNAAFHGETGLSSEELKGMTVFNIVHPTDLSRALDLISRMIDCGYSNQNGDDNTNSTSLRGE 574
BLAST of NO19G01400 vs. NCBI_GenBank
Match: EJK65393.1 (hypothetical protein THAOC_13749 [Thalassiosira oceanica]) HSP 1 Score: 74.7 bits (182), Expect = 1.400e-9 Identity = 64/217 (29.49%), Postives = 103/217 (47.47%), Query Frame = 0 Query: 504 KRKQDRNAREQKRSLKISQQIGHLKTVLEKEGRKVKKNSKMAILLSVEDYIKELEEEVAGMTMRWEGKEEGREDEEAEYGGFGAGDGIXXXXXXXXXXXXXXXXXXXXXWNGVSGCARV------VTGVREGAEEREVASGVGYQLLFKQVSTPLAVASVDGKLIDANVRFEMASGYSKEELLRLTFFNLVSPEDLQTTFAAIARMIN-QGGEEDED 714 +R+++RN RE++RSLKI+QQI L+ +L G V K +K IL +YI+ L++ + E+G+ +E + G GA NG + +G+ + +RE Y+ +F S +A+A++ G ID N+ F S YSK+EL +T FN+ S EDLQ F ++++I G+ D D Sbjct: 96 ERREERNLREKERSLKITQQIHELRNLLSLGGVIVPKGTKSTILTEAANYIRLLQQHQVRSEV-----EKGQLVKEVQRIGSGA-------------------IQQNAAQNGALSQGQAQQPQAPSSGIADTLGDRE------YRCVFNSCSVGMAIATMGGSFIDCNLAFTQLSSYSKQELKAMTIFNITSREDLQGAFDMMSQLITPPSGQLDAD 282
BLAST of NO19G01400 vs. NCBI_GenBank
Match: XP_002286295.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95936.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 73.9 bits (180), Expect = 2.400e-9 Identity = 67/254 (26.38%), Postives = 117/254 (46.06%), Query Frame = 0 Query: 505 RKQDRNAREQKRSLKISQQIGHLKTVLEKEGRKVKKNSKMAILLSVEDYIKELEEEVAGMTMRWEGKEEGREDEEAEYGGFGAGDGIXXXXXXXXXXXXXXXXXXXXXWNGVSGCARVVTGVREGAEEREVASGVG-YQLLFKQVSTPLAVASVDGKLIDANVRFEMASGYSKEELLRLTFFNLVSPEDLQTTFAAIARMINQGGEEDEDERVGRREEELLKLTKRAVPKGRAGGEEGGLLLYITISLVR-QHG 757 ++Q+RNARE++RS +I++QI L+++L + G V K +K ++L +YI L+++ ++WE + + E G I N ++ + +GV G Y+ +F S +A+AS+ G ID N F S YSKEE+ +T FN+ + DLQ F I++MI + + + + +++ + R K R L ++ISL+R +HG Sbjct: 594 KRQERNAREKERSCRIAKQIDDLRSLLSRGGVVVAKGTKSSVLAEAANYINVLQQQ----QVQWEMDRQALVRQMQEVGATPDMAQIQQQGVMPMNP------------NSIAQVQQAASGVPGAMTMNPSTMGPNDYKFVFNNSSVGMAIASMGGAFIDCNENFCQLSEYSKEEVCAMTIFNMTARSDLQHAFELISQMITPALDSNAAQLQQQAQDKAGTIVLRGAMKTRND-------LGLSISLIRGEHG 824
BLAST of NO19G01400 vs. NCBI_GenBank
Match: ALR84570.1 (bHLH transcription factor 1 [Nannochloropsis salina]) HSP 1 Score: 70.9 bits (172), Expect = 2.000e-8 Identity = 84/308 (27.27%), Postives = 136/308 (44.16%), Query Frame = 0 Query: 474 VADARGAGADTTNVGGLPSSGAEGGKV--------------SNGKRKQDRNAREQKRSLKISQQIGHLKTVLEKEGRKVKKNSKMAILLSVEDYIKELEEEVAGMTMRWEGKEEGREDEEAEYGGFG-AGDGIXXXXXXXXXXXXXXXXXXXXXWNGVSGCARVVTGVREGAEEREVASGVGYQLLFKQVSTPLAVASVDGKLIDANVRFEMASGYSKEELLRLTFFNLVSPEDLQTTFAAIARMINQGGEEDEDERVGRREEELLKLTKRAVPKGRAGGEEGGLLLYITISLVRQHGQNPSFFQCSL 767 + R A +D G G G +V S+ ++K+ RN REQ+R+ I+ QI LK VLE ++ SK IL + ++YI+ L + + ++ + G + + AG G+ XXXXXXXXXXX +RE+ + + +F+ P+AV S+DG+L+ NV F +GY+ ++L +T F L +PE L+ F +IAR+++ ++++ RA P G +E +LL SLVR F C + Sbjct: 336 MGSGRTAASDAFCAGSAAKRGTSGAQVMGTSERGMQEEDGMSDERKKRLRNEREQRRAHLITDQIDSLKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLDLKHKLSGGGAGSPMTGFCKYNKAGIGV------EGQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQREIV--LDFSEIFRSSHVPMAVVSIDGRLLQCNVEFSRVTGYTNDKLAGVTLFGLAAPECLEQLFKSIARLLSTAALDEKNPAY------FATAAARATPFSHPGYKEANILL----SLVRDEEHRARAFHCCI 625
BLAST of NO19G01400 vs. NCBI_GenBank
Match: EJK64575.1 (hypothetical protein THAOC_14684 [Thalassiosira oceanica]) HSP 1 Score: 66.6 bits (161), Expect = 3.800e-7 Identity = 63/254 (24.80%), Postives = 114/254 (44.88%), Query Frame = 0 Query: 508 DRNAREQKRSLKISQQIGHLKTVLEKEGRKVKKNSKMAILLSVEDYIKELEEEVAGMTMRWEGKEEG--REDEEAEYGGFGAGDGIXXXXXXXXXXXXXXXXXXXXXWNGVSGCARVVTGVREGAEEREVASGVG---YQLLFKQVSTPLAVASVDGKLIDANVRFEMASGYSKEELLRLTFFNLVSPEDLQTTFAAIARMINQGGEEDEDERVGRREEELLKLTKRAVPKGRAGGEEGGLLLYITISLVRQHG 757 +RNARE++RS KI++QI L+ +L + G V K +K+ +L +YI L+++ ++WE + ++ ++ + A G ++G + AS + Y+ +F+ + +A+A++ G +D N F S Y+KEE+ +T FN+ S DLQ F I++MI + D+D ++ + R K R+ L ++ISL+R G Sbjct: 2 ERNAREKERSCKIARQIDELRALLSRGGVTVTKGTKITVLAEAANYINLLQQQ----QVQWEMDRQSLVQQMQQMQANAQSAIQG--------------------QTGRAITGRTNPLNPTPNPLLPSSSASAISPDDYKHIFESSTVGMAIATLGGAFVDCNSIFSQLSEYTKEEVAVMTIFNMTSRADLQHAFDLISQMITPSDDADKDS----SDDGGQSIVLRGAMKSRSD-------LGLSISLIRGEG 220 The following BLAST results are available for this feature:
BLAST of NO19G01400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO19G01400 ID=NO19G01400|Name=NO19G01400|organism=Nannochloropsis oceanica|type=gene|length=2815bpback to top protein sequence of NO19G01400.1 >NO19G01400.1-protein ID=NO19G01400.1-protein|Name=NO19G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=768bpback to top Synonyms
Publications
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