NO19G01340, NO19G01340 (gene) Nannochloropsis oceanica

Overview
NameNO19G01340
Unique NameNO19G01340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2151
Alignment locationchr19:415138..417288 +

Link to JBrowse

Properties
Property NameValue
DescriptionTetratricopeptide repeat protein 38
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:415138..417288 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Homology
BLAST of NO19G01340 vs. NCBI_GenBank
Match: EWM23632.1 (hypothetical protein Naga_100165g13 [Nannochloropsis gaditana])

HSP 1 Score: 318.9 bits (816), Expect = 3.900e-83
Identity = 192/396 (48.48%), Postives = 238/396 (60.10%), Query Frame = 0
Query:  299 MWAFALEETGDLNRAALVARQVLSEDATDVTALHALIHTYEMTGRREEGEKIYKEFKGKWEDL-PSLFTNHVAWHRAVLALGREEG--------IVWEVLDGVLLKEGGKEGGTVAPATPLALADAASLLWRMMLMEDEGXXXXXXXXXXXXXXXXXKWEELRTWYGDGGYETMHTTSFNDVHMMMCLSVTDIPAAKASLSSMKRHAAASLPXXXXXXXXXXXXXXXXXXXXXXWPRWWEVVYGIGQLVRVLKIPTLSDWLQRTFREXXXXXXXXXXXXXXXXXXXXXXXXGLPFLLPQPTNSYVLSEVGLDISEALIHYVQGNYSQTVKLLSSSSSRWHLIGGSHAQRDVLKLTLISACLKMDTDLNLGRRLLAERAMEKDEWNEEGVWTLLRRV 686
            MWAFALEE GDL+R+A VAR VL ED  D  ALHAL+HTYEM   R EG + ++E     E + PSLF +H+AWHRAV+ALG EEG        +VW VLD VLLK+ G+     APATPLA+ADA+SLLWRMML+ + G                 +   LR WY +GGYE MH+TSFNDVHM+MCL+  D+PAA  +L+SM+R AA++                          R W V     Q  R+   P  S WLQR +                           LP   PQ TN+ VL+ VGLD+  ALI +V+G+Y++TV+LLS+S+  WHL+GGSHAQRDVL LTLI+ACL+  TDL   RRLLAERAMEKD  NEEG WTLLR++
Sbjct:    1 MWAFALEEAGDLHRSAEVARSVLEEDPMDDIALHALVHTYEMVAARREGREAFRE-----EGMPPSLFAHHIAWHRAVMALGWEEGGMEEGWEAVVWRVLDDVLLKDEGRR----APATPLAMADASSLLWRMMLVGEGG-----GEDGEGEDRVMKRLHALRKWYQEGGYEDMHSTSFNDVHMLMCLARVDLPAAHRALASMRRLAASA-----GERRALNRRGRGGSQRLHRQLRNWLVC----QFFRLPFPPPRSSWLQRGW----CAEDEFDGRESFSVTTSSDFSSSLP--TPQSTNAKVLAMVGLDVGAALIKFVEGDYAETVRLLSASAPHWHLVGGSHAQRDVLALTLITACLRNRTDLARARRLLAERAMEKDPENEEGTWTLLRQL 367          
BLAST of NO19G01340 vs. NCBI_GenBank
Match: CBJ33774.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 107.8 bits (268), Expect = 1.400e-19
Identity = 135/500 (27.00%), Postives = 190/500 (38.00%), Query Frame = 0
Query:  210 AMYWEEVLAMNPRELLAVRSVHDAYIILGDSEGMKRSLARVLSRWDLGEERVNGREEALEDEKXXXXXXXXXXXXXXXXXENDYRMVRSMWAFALEETGDLNRAALVARQVLSEDATDVTALHALIHTYEMTGRREEGEKIYKEFKGKWEDLPSLFTNHVAWHRAVLALGR-EEGIVWEVLDGVLL--KEGGKEGGT--VAPATPLALADAASLLWRMMLMEDEGXXXXXXXXXXXXXXXXXKWEEL-RTWYGDGGYETMHTTSFNDVHMMMCLSVTDIPAAKASLSSMKRHAAASLPXXXXXXXXXXXXXXXXXXXXXXW-PRWWEVVYGIGQLVRVLKIPTLSDWLQRTFREXXXXXXXXXXXXXXXXXXXXXXXXGLPF--------------LLPQPTNSYVLSEVGLDISEALIHYVQGNYSQTVKLLSSSSSRWHLIGGSHAQRDVLKLTLISACLKMDTDLNLGRRLLAERAMEKDEWNEEGVWTLLRRVAER 689
            A++ E  L   P +L A++   DA++ LGDS  M+  + RVL  W                                      Y  V  M AF L E G    A   A   L+   TD+ A+HA+ H +EM  R  EG     E + KWED       H+AWH  + +L R +E     V D +L   +EGG   G   + P  P AL DA+SLLWRM L+  E                  +W  +   W         H ++F+D+H +M        A  A  + ++  A A                         W  R  E++  +G+ V+                 XXXXXXXXXXXXX             P               +   P N +V   VGL +  A+  Y  G + + V LL         IGGS AQ+DV+ LTL+ A L++     + R L+ ER +++        W     V ER
Sbjct:  170 ALHLETWLMSAPVDLPALKLSQDAHLTLGDSANMRDCVGRVLPFWS--------------------------------DATFGYGNVLGMHAFGLVENGAYALAEERADMALAIQRTDIWAVHAMAHVFEMEARASEGCSFLTECRDKWEDTEGPLQQHMAWHLGLFSLERGQEARATRVFDTLLAPPREGGTLDGALLLPPPAPFALTDASSLLWRMDLLGVE--------------TGASRWRGVAEAWL--QYQHARHLSTFHDLHALM--------AFAAMANGVEDDAEAE-----------------------YWESRTRELLESMGEYVKSGGEXXXXXXXXXXXXXXXXXXXXXXXXXXATPTAAPVELHAFPVSRNRGVGGDADEGGVEGPPDNLWVAEHVGLPLCRAMAAYRGGEFDEAVSLLLPLRYHLDAIGGSKAQQDVVHLTLLDAALRLPEKATVARTLVCERRLQRP--TSGRAWEAFATVMER 588          
BLAST of NO19G01340 vs. NCBI_GenBank
Match: WP_073985604.1 (tetratricopeptide repeat protein [Mesorhizobium plurifarium] >CDX51085.1 conserved hypothetical protein [Mesorhizobium plurifarium])

HSP 1 Score: 107.8 bits (268), Expect = 1.400e-19
Identity = 122/483 (25.26%), Postives = 183/483 (37.89%), Query Frame = 0
Query:  185 TARERWYYLAFHALYYPPTPDFALAAMYWEEVLAMNPRELLAVRSVHDAYIILGDSEGMKRSLARVLSRWDLGEERVNGREEALEDEKXXXXXXXXXXXXXXXXXENDYRMVRSMWAFALEETGDLNRAALVARQVLSEDATDVTALHALIHTYEMTGRREEGEKIYKEFKGKWEDLPSLFTNHVAWHRAVLALGREEGIVWEVLDGVLLKEGGKEGGTVAPATPLALADAASLLWRMMLMEDEGXXXXXXXXXXXXXXXXXKWEELR-TWYGDGGYETMHTTSFNDVHMMMCLSVTDIPAAKASLSSMKRHAAASLPXXXXXXXXXXXXXXXXXXXXXXWPRWWEVVYGIGQLVRVLKIPTLSDWLQRTFREXXXXXXXXXXXXXXXXXXXXXXXXGLPFLLPQPTNSYVLSEVGLDISEALIHYVQGNYSQTVKLLSSSSSRWHLIGGSHAQRDVLKLTLISACLKMDTDLNLGRRLLAER 667
            T RER +  A  A       +   A   WE +L  +P + LA+R  HD+Y  LG S  ++ S+ARVL  WD                                    +Y  +   +AF LEE G+L RA   AR+ ++ +  D  A+HA+ H  E   R++EG +  K  +  W    +L + H  WH A+  +  EEG + EVL         K  G     + L L DA++LLWR+ L                      +W  L   W     +   H   FND+H+ + LS  D           KR                                      G+ +L+R     +L D+      +                                  N  +  +VG  I +A + + QG+Y++TV+L+     +   IGGSHAQRD++  TLI+A  +   ++NL R LLAER
Sbjct:   86 TPRERRHLAAAKAW---AAGEIIAATDIWESILVDHPTDALALRFAHDSYFYLGHSTSIRDSVARVLPSWDTSNP--------------------------------NYGFLLGQYAFGLEEAGELRRAEDFARRAIASNPEDAWAVHAVAHVLETESRQQEGIEFLKGSRPAWGKAHAL-SVHNGWHLALYLI--EEGRLAEVLADYDRYVQPKLAGD----SLLDLVDASALLWRVEL---------------AGGNVGDRWNALADQWL---THADDHVLVFNDLHIALALSRAD-----------KRD-------------------------------------GLDRLLR-----SLDDYAAHGHGD----------------------------------NRDITVDVGRRIVDAAVAFAQGDYARTVELILPVRYKIIRIGGSHAQRDLVTQTLIAAA-ERSGNVNLARALLAER 420          
BLAST of NO19G01340 vs. NCBI_GenBank
Match: WP_083639176.1 (tetratricopeptide repeat protein [Rhizobium oryzae] >SEM25851.1 hypothetical protein SAMN04487976_12529 [Rhizobium oryzae])

HSP 1 Score: 106.3 bits (264), Expect = 4.000e-19
Identity = 116/459 (25.27%), Postives = 172/459 (37.47%), Query Frame = 0
Query:  209 AAMYWEEVLAMNPRELLAVRSVHDAYIILGDSEGMKRSLARVLSRWDLGEERVNGREEALEDEKXXXXXXXXXXXXXXXXXENDYRMVRSMWAFALEETGDLNRAALVARQVLSEDATDVTALHALIHTYEMTGRREEGEKIYKEFKGKWEDLPSLFTNHVAWHRAVLALGREEGIVWEVLDGVLLKEGGKEGGTVAPATPLALADAASLLWRMMLMEDEGXXXXXXXXXXXXXXXXXKWEELRT-WYGDGGYETMHTTSFNDVHMMMCLSVTDIPAAKASLSSMKRHAAASLPXXXXXXXXXXXXXXXXXXXXXXWPRWWEVVYGIGQLVRVLKIPTLSDWLQRTFREXXXXXXXXXXXXXXXXXXXXXXXXGLPFLLPQPTNSYVLSEVGLDISEALIHYVQGNYSQTVKLLSSSSSRWHLIGGSHAQRDVLKLTLISACLKMDTDLNLGRRLLAER 667
            A   WE++L  +PR+ LA+R  HD+Y  LG S  ++ S+ARVL  WD        R++A                         Y  V   +AF LEE G+L RA  V R+ ++ D  D  A+HA+ H  E   R+ EG    K  +  W    +L + H  WH A+  +  EEG      D VL          +A  + L L DA++LLWR+ L   +                  +W  L   W     +   H   FND+H+ + +             +++RH A+                                                   L R  RE                               Q  N  +  +VG  + +A++ +  G+Y++T+ L+     +   IGGSHAQRD+L  TLI+A  +     NL R LLAER
Sbjct:  107 ATEIWEDILLDHPRDALALRFAHDSYFYLGHSLSIRDSVARVLPAWD--------RQDA------------------------HYGHVLGQYAFGLEEAGELLRAEAVGREAIARDEEDGWAVHAVAHVLETASRQAEGIAFLKASRPAWSRAHAL-SIHNGWHLALYLI--EEGRT----DEVLADYDRHVAPRLADDSLLDLVDASALLWRLELAGAD---------------VGPRWTPLAAQWL---RHVDEHVLVFNDLHIALAV------GRSGDTEAVERHLAS---------------------------------------------------LDRYEREG------------------------------QGDNREITVDVGRRLIDAVLAFAGGDYARTIDLILPVRYKIIRIGGSHAQRDLLTQTLIAAADRAGRH-NLARALLAER 420          
BLAST of NO19G01340 vs. NCBI_GenBank
Match: OLP62612.1 (hypothetical protein BJF93_12440 [Rhizobium oryzae])

HSP 1 Score: 106.3 bits (264), Expect = 4.000e-19
Identity = 116/459 (25.27%), Postives = 172/459 (37.47%), Query Frame = 0
Query:  209 AAMYWEEVLAMNPRELLAVRSVHDAYIILGDSEGMKRSLARVLSRWDLGEERVNGREEALEDEKXXXXXXXXXXXXXXXXXENDYRMVRSMWAFALEETGDLNRAALVARQVLSEDATDVTALHALIHTYEMTGRREEGEKIYKEFKGKWEDLPSLFTNHVAWHRAVLALGREEGIVWEVLDGVLLKEGGKEGGTVAPATPLALADAASLLWRMMLMEDEGXXXXXXXXXXXXXXXXXKWEELRT-WYGDGGYETMHTTSFNDVHMMMCLSVTDIPAAKASLSSMKRHAAASLPXXXXXXXXXXXXXXXXXXXXXXWPRWWEVVYGIGQLVRVLKIPTLSDWLQRTFREXXXXXXXXXXXXXXXXXXXXXXXXGLPFLLPQPTNSYVLSEVGLDISEALIHYVQGNYSQTVKLLSSSSSRWHLIGGSHAQRDVLKLTLISACLKMDTDLNLGRRLLAER 667
            A   WE++L  +PR+ LA+R  HD+Y  LG S  ++ S+ARVL  WD        R++A                         Y  V   +AF LEE G+L RA  V R+ ++ D  D  A+HA+ H  E   R+ EG    K  +  W    +L + H  WH A+  +  EEG      D VL          +A  + L L DA++LLWR+ L   +                  +W  L   W     +   H   FND+H+ + +             +++RH A+                                                   L R  RE                               Q  N  +  +VG  + +A++ +  G+Y++T+ L+     +   IGGSHAQRD+L  TLI+A  +     NL R LLAER
Sbjct:  109 ATEIWEDILLDHPRDALALRFAHDSYFYLGHSLSIRDSVARVLPAWD--------RQDA------------------------HYGHVLGQYAFGLEEAGELLRAEAVGREAIARDEEDGWAVHAVAHVLETASRQAEGIAFLKASRPAWSRAHAL-SIHNGWHLALYLI--EEGRT----DEVLADYDRHVAPRLADDSLLDLVDASALLWRLELAGAD---------------VGPRWTPLAAQWL---RHVDEHVLVFNDLHIALAV------GRSGDTEAVERHLAS---------------------------------------------------LDRYEREG------------------------------QGDNREITVDVGRRLIDAVLAFAGGDYARTIDLILPVRYKIIRIGGSHAQRDLLTQTLIAAADRAGRH-NLARALLAER 422          
BLAST of NO19G01340 vs. NCBI_GenBank
Match: WP_106675391.1 (tetratricopeptide repeat protein [Streptosporangium nondiastaticum] >PSJ29012.1 tetratricopeptide repeat-containing protein [Streptosporangium nondiastaticum])

HSP 1 Score: 105.1 bits (261), Expect = 8.900e-19
Identity = 113/455 (24.84%), Postives = 167/455 (36.70%), Query Frame = 0
Query:  215 EVLAMNPRELLAVRSVHDAYIILGDSEGMKRSLARVLSRWDLGEERVNGREEALEDEKXXXXXXXXXXXXXXXXXENDYRMVRSMWAFALEETGDLNRAALVARQVLSEDATDVTALHALIHTYEMTGRREEGEKIYKEFKGKWEDLPSLFTNHVAWHRA--VLALGREEGIVWEVLDGVLLKEGGKEGGTVAPATPLALADAASLLWRMMLMEDEGXXXXXXXXXXXXXXXXXKWEELRTWYGDGGYETMHTTSFNDVHMMMCLSVTDIPAAKASLSSMKRHAAASLPXXXXXXXXXXXXXXXXXXXXXXWPRWWEVVYGIGQLVRVLK-IPTLSDWLQRTFREXXXXXXXXXXXXXXXXXXXXXXXXGLPFLLPQPTNSYVLSEVGLDISEALIHYVQGNYSQTVKLLSSSSSRWHLIGGSHAQRDVLKLTLISACLKMDTDLNLGRRLLAER 667
            E+   +P++ LA+   H    + G++  ++  +   L+ WD  + +                                Y +++ M+AF LEE G    A  VA + +  +A DV  +HA+ H YEM GR E+G +  +     W D  +  + H +WH A  VL  GR + ++  V D  +  E    GG       + L DAASLLWR+ L                       WE  R    DG Y      +FNDVH +M                                                         G G++    + +    +WL+ T                           G P   P  +N  + +E+G+ +S ALI Y Q  Y + V LL     R H  GGSHAQRD L+ TL+ A L     L+L R LL+ER
Sbjct:  116 ELAVTHPKDALALAVGHQTDFLTGNAVLLRDRIGGALTAWDADDPQ--------------------------------YGLLQGMYAFGLEEAGHYGLAERVALEAVERNARDVWGIHAVAHAYEMQGRYEDGIRFLEARTDDWSD-GNYLSVHNSWHYALYVLETGRTDAVL-AVYDAAVHNE--DSGGAA-----MELLDAASLLWRLHL--------AGAGTGDRWPALADAWERRR----DGAY-----YAFNDVHAVM------------------------------------------------------AYVGAGRVADAERLVRDREEWLRTT-------------------------GAGTP---PGLSNVGMTAEIGVPVSRALIAYGQQRYDEAVDLLLPLRHRLHTFGGSHAQRDALQKTLVEAALHAGR-LDLARTLLSER 429          
BLAST of NO19G01340 vs. NCBI_GenBank
Match: WP_042879848.1 (tetratricopeptide repeat protein [Cupriavidus necator])

HSP 1 Score: 104.0 bits (258), Expect = 2.000e-18
Identity = 126/473 (26.64%), Postives = 178/473 (37.63%), Query Frame = 0
Query:  205 DFALAAMYWEEVLAMNPRELLAVRSVHDAYIILGDSEGMKRSLARVLSRWDLGEERVNGREEALEDEKXXXXXXXXXXXXXXXXXENDYRMVRSMWAFALEETGDLNRAALVARQVLSEDATDVTALHALIHTYEMTGRREEGEKIYKEFKGKWEDLPSLFTNHVAWHRAVLALGREEGIVWEVL---DGVLLKEGGKEGGTVAPATPLALADAASLLWRMMLM-EDEGXXXXXXXXXXXXXXXXXKWEELR-TWYGDG--GYETMHTTSFNDVHMMMCLSVTDIPAAKASLSSMKRHAAASLPXXXXXXXXXXXXXXXXXXXXXXWPRWWEVVYGIGQLVRVLKIPTLSDWLQRTFREXXXXXXXXXXXXXXXXXXXXXXXXGLPFLLPQPTNSYVLSEVGLDISEALIHYVQGNYSQTVKLLSSSSSRWHLIGGSHAQRDVLKLTLISACLKMDTDLNLGRRLLAERAMEK 671
            +F+ +   + E++   PR+LLA++  H    +LG S  ++  +A+ L  WD G                                   Y  +  M AF LEET    RA    R+ L  +  D  A+HA+ H  EM GR  +G       +  W D  ++   H  WH A+  L  E+G + +VL   D  + +         APA  L L DA +LLWR+ L   D G                 +W+ +   W G G  GY      +FNDVH +M           ASL + +R AAA+                                      VR          LQR                                 L   TN+ +  +VGL +++ALI + QG+Y   ++LL+      H  GGSHAQRDV+ LTLI A L+     NL   L AERA  K
Sbjct:  105 NFSRSNQLYGEIVIDYPRDLLALQVAHLGDFLLGQSTMLRDRVAQALPHWDAGMP--------------------------------GYGFLLGMHAFGLEETQLYERAEERGRRALELNPRDPWAVHAVAHVMEMQGRLADGIAWLDARRDDWAD-DNMLAVHNWWHLALFQL--EDGRIEDVLALYDRYISRP--------APAIALDLVDATALLWRLRLRGVDTG----------------KRWQPVADDWLGRGAAGY-----YAFNDVHAVM-----------ASLGAGRREAAAA--------------------------------------VRAA--------LQRA-------------------------------ELGDGTNAMMAHDVGLPVADALIAFEQGDYETAIELLAPVRLVAHRFGGSHAQRDVISLTLIEAALRAGRS-NLANALTAERAALK 424          
BLAST of NO19G01340 vs. NCBI_GenBank
Match: WP_012356754.1 (tetratricopeptide repeat protein [Cupriavidus taiwanensis] >CAQ72541.1 conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424])

HSP 1 Score: 102.4 bits (254), Expect = 5.800e-18
Identity = 121/472 (25.64%), Postives = 166/472 (35.17%), Query Frame = 0
Query:  205 DFALAAMYWEEVLAMNPRELLAVRSVHDAYIILGDSEGMKRSLARVLSRWDLGEERVNGREEALEDEKXXXXXXXXXXXXXXXXXENDYRMVRSMWAFALEETGDLNRAALVARQVLSEDATDVTALHALIHTYEMTGRREEGEKIYKEFKGKWEDLPSLFTNHVAWHRAVLALGREEGIVWEVL---DGVLLKEGGKEGGTVAPATPLALADAASLLWRMMLMEDEGXXXXXXXXXXXXXXXXXKWEELR-TWYGDG--GYETMHTTSFNDVHMMMCLSVTDIPAAKASLSSMKRHAAASLPXXXXXXXXXXXXXXXXXXXXXXWPRWWEVVYGIGQLVRVLKIPTLSDWLQRTFREXXXXXXXXXXXXXXXXXXXXXXXXGLPFLLPQPTNSYVLSEVGLDISEALIHYVQGNYSQTVKLLSSSSSRWHLIGGSHAQRDVLKLTLISACLKMDTDLNLGRRLLAERAMEK 671
            DF  A   + +++   PR+LLA+++ H    +LG S  ++  +A+ L  WD                                     Y  V  M AF LEET    RA    R+ L     D  A+HA+ H  EM GR  EG    +  +  W D  ++   H  WH A+  L  E+G   EVL   D  + +         APA  L L DA++LLWR+ L                      +W  +   W G G  GY      +FNDVH +M       PAA   + +    AA                                                                                        L   TN+ +  EVGL +++ALI + QG+Y+  + LL       H  GGSHAQRDVL LTL+ A L+  +  NL   L AERA  K
Sbjct:  105 DFERAVRCYGDIVIDYPRDLLALQTAHLGDFLLGQSTMLRDRVAQALPHWDAAMP--------------------------------GYGYVLGMHAFGLEETQHYERAEEAGRRALECQPRDPWAVHAVAHVMEMQGRLAEGVAWLEGRRQDWAD-DNMLAVHNWWHLALFLL--EDGKTDEVLALYDRAISRP--------APAIALDLVDASALLWRLHL---------------RGVDVGRRWHAVADDWLGRGAAGY-----YAFNDVHAVMASLGAQRPAAADQVRAALERAA----------------------------------------------------------------------------------------LGNGTNAMMSREVGLPVADALIAFTQGDYATAIDLLMPVRLVAHRFGGSHAQRDVLGLTLVEAALRSGS-ANLALALTAERAALK 424          
BLAST of NO19G01340 vs. NCBI_GenBank
Match: WP_025584293.1 (tetratricopeptide repeat protein [Cupriavidus taiwanensis])

HSP 1 Score: 102.4 bits (254), Expect = 5.800e-18
Identity = 121/472 (25.64%), Postives = 166/472 (35.17%), Query Frame = 0
Query:  205 DFALAAMYWEEVLAMNPRELLAVRSVHDAYIILGDSEGMKRSLARVLSRWDLGEERVNGREEALEDEKXXXXXXXXXXXXXXXXXENDYRMVRSMWAFALEETGDLNRAALVARQVLSEDATDVTALHALIHTYEMTGRREEGEKIYKEFKGKWEDLPSLFTNHVAWHRAVLALGREEGIVWEVL---DGVLLKEGGKEGGTVAPATPLALADAASLLWRMMLMEDEGXXXXXXXXXXXXXXXXXKWEELR-TWYGDG--GYETMHTTSFNDVHMMMCLSVTDIPAAKASLSSMKRHAAASLPXXXXXXXXXXXXXXXXXXXXXXWPRWWEVVYGIGQLVRVLKIPTLSDWLQRTFREXXXXXXXXXXXXXXXXXXXXXXXXGLPFLLPQPTNSYVLSEVGLDISEALIHYVQGNYSQTVKLLSSSSSRWHLIGGSHAQRDVLKLTLISACLKMDTDLNLGRRLLAERAMEK 671
            DF  A   + +++   PR+LLA+++ H    +LG S  ++  +A+ L  WD                                     Y  V  M AF LEET    RA    R+ L     D  A+HA+ H  EM GR  EG    +  +  W D  ++   H  WH A+  L  E+G   EVL   D  + +         APA  L L DA++LLWR+ L                      +W  +   W G G  GY      +FNDVH +M       PAA   + +    AA                                                                                        L   TN+ +  EVGL +++ALI + QG+Y+  + LL       H  GGSHAQRDVL LTL+ A L+  +  NL   L AERA  K
Sbjct:  105 DFERAVRCYGDIVIDYPRDLLALQTAHLGDFLLGQSTMLRDRVAQALPHWDAAMP--------------------------------GYGYVLGMHAFGLEETQHYERAEEAGRRALECQPRDPWAVHAVAHVMEMQGRLAEGVAWLEGRRQDWAD-DNMLAVHNWWHLALFLL--EDGKTDEVLALYDRAISRP--------APAIALDLVDASALLWRLHL---------------RGVDVGRRWHAVADDWLGRGAAGY-----YAFNDVHAVMASLGAQRPAAADQVRAALERAA----------------------------------------------------------------------------------------LGNGTNAMMSREVGLPVADALIAFTQGDYATAIDLLMPVRLVAHRFGGSHAQRDVLGLTLVEAALRSGS-ANLALALTAERAALK 424          
BLAST of NO19G01340 vs. NCBI_GenBank
Match: AGW94754.1 (peptidylprolyl isomerase [Ralstonia pickettii DTP0602])

HSP 1 Score: 102.1 bits (253), Expect = 7.600e-18
Identity = 123/472 (26.06%), Postives = 176/472 (37.29%), Query Frame = 0
Query:  205 DFALAAMYWEEVLAMNPRELLAVRSVHDAYIILGDSEGMKRSLARVLSRWDLGEERVNGREEALEDEKXXXXXXXXXXXXXXXXXENDYRMVRSMWAFALEETGDLNRAALVARQVLSEDATDVTALHALIHTYEMTGRREEGEKIYKEFKGKWEDLPSLFTNHVAWHRAVLALGREEGIVWEVL---DGVLLKEGGKEGGTVAPATPLALADAASLLWRMMLMEDEGXXXXXXXXXXXXXXXXXKWEELR-TWYGDG--GYETMHTTSFNDVHMMMCLSVTDIPAAKASLSSMKRHAAASLPXXXXXXXXXXXXXXXXXXXXXXWPRWWEVVYGIGQLVRVLKIPTLSDWLQRTFREXXXXXXXXXXXXXXXXXXXXXXXXGLPFLLPQPTNSYVLSEVGLDISEALIHYVQGNYSQTVKLLSSSSSRWHLIGGSHAQRDVLKLTLISACLKMDTDLNLGRRLLAERAMEK 671
            DF+ +   + E++  +PR+LLA++  H    +LG S  ++  +A+ L  WD G                                   Y  +  M AF LEET    RA    R+ L  +  D  A+HA+ H  EM GR  +G       +  W D  ++   H  WH A+  L  E+G + +VL   D  + +         APA  L L DA +LLWR+ L                      +W+ +   W G G  GY      +FNDVH +M           ASL + +  AAA+                                   G+             LQR                                 L   TN+ +  +VGL +++ALI + QG+Y   ++LL+      H  GGSHAQRDV+ LTLI A L+     NL   L AERA  K
Sbjct:  105 DFSRSNQLYGEIVIDHPRDLLALQVAHLGDFLLGQSTMLRDRVAQALPHWDAGMP--------------------------------GYGYLLGMHAFGLEETQLYERAEERGRRALELNPRDPWAVHAVAHVMEMQGRLADGIAWLDARRDDWAD-DNMLAVHNWWHLALFQL--EDGRIEDVLALYDRYISRP--------APAIALDLVDATALLWRLRL---------------RGVDVGKRWQPVADDWLGRGAAGY-----YAFNDVHAVM-----------ASLGAGRPEAAAA-----------------------------------GRAA-----------LQRA-------------------------------ELGDGTNAMMSHDVGLPVADALIAFEQGDYGTAIELLAPVRLVAHRFGGSHAQRDVISLTLIEAALRAGRS-NLANALTAERAALK 424          
The following BLAST results are available for this feature:
BLAST of NO19G01340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23632.13.900e-8348.48hypothetical protein Naga_100165g13 [Nannochlorops... [more]
CBJ33774.11.400e-1927.00conserved unknown protein [Ectocarpus siliculosus][more]
WP_073985604.11.400e-1925.26tetratricopeptide repeat protein [Mesorhizobium pl... [more]
WP_083639176.14.000e-1925.27tetratricopeptide repeat protein [Rhizobium oryzae... [more]
OLP62612.14.000e-1925.27hypothetical protein BJF93_12440 [Rhizobium oryzae... [more]
WP_106675391.18.900e-1924.84tetratricopeptide repeat protein [Streptosporangiu... [more]
WP_042879848.12.000e-1826.64tetratricopeptide repeat protein [Cupriavidus neca... [more]
WP_012356754.15.800e-1825.64tetratricopeptide repeat protein [Cupriavidus taiw... [more]
WP_025584293.15.800e-1825.64tetratricopeptide repeat protein [Cupriavidus taiw... [more]
AGW94754.17.600e-1826.06peptidylprolyl isomerase [Ralstonia pickettii DTP0... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL013nonsL013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR037ngnoR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004477NSK004477Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01340.1NO19G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01340.1NO19G01340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01340 ID=NO19G01340|Name=NO19G01340|organism=Nannochloropsis oceanica|type=gene|length=2151bp
ATGGCTAGACCACCATACCTTGGCCTTCTTCCCGCCCTGGCTGCGCTGCG
CCTCTTCATGTCTGTGTACATCGTGGCCGTGTTGACCTTCGCCTCCTCGC
GTGACGCCATCGGCTATCCCTCTTCCAGCAGCACCACTTCTTCTACTCAA
TCCTTTCCCTCGGTTCCATCTGATCTTCGTACATCCGATGCCTGGGGTCC
CATTTCCACACCTGTCCCCCCCGAGGCTATCACACTCTTCAATGAAGCTG
TCCGGTCTTATGCGGGGCTGCGAGGCCAGGTGCTTGAACCCCTCTTGGAG
CTCACCACCAGCACCCCTTTCTCTCTCTCCCTCAATTCGTCATCCTCATA
TTTGATGGCACATATATACCGAGGTTCCATCCTTCTGTTGTCGACAGGTG
TGCTAAAAAATAGCCCACTTGTCCGAGAAAGCTATCACGCCGCTGCTGCC
TTCTTCATGGACCTCCCTCCCTCCCACCACCTTTCCCATGAGCAACAGCT
GCGCCACCAGCAGCACCAACAGCAACAGCAAGAGTACCCGTATTCAAGCC
CAACAGCTCGTGAACGTTGGTATTATCTCGCGTTTCATGCCCTGTATTAC
CCGCCCACTCCTGATTTCGCACTTGCCGCCATGTATTGGGAAGAGGTCTT
AGCAATGAACCCTCGGGAATTGTTGGCGGTAAGGAGTGTCCATGACGCGT
ACATTATTTTAGGGGATAGCGAGGGAATGAAGAGGAGCTTGGCCAGGGTG
TTGAGTCGATGGGACTTGGGGGAGGAAAGGGTGAATGGGAGGGAGGAAGC
ATTGGAGGACGAGAAACGTTCGGAGCCCCAAAAGGAGAAGGAGGAGAAGG
AGAAGGAGGCGAAGGTGGAGAATGATTACCGTATGGTTCGAAGTATGTGG
GCTTTCGCCTTGGAAGAAACAGGCGATCTGAACCGTGCCGCCCTTGTAGC
CCGTCAAGTCCTGTCGGAAGACGCTACAGATGTAACTGCTTTACATGCCT
TGATACATACCTACGAAATGACAGGTAGGAGAGAAGAAGGGGAAAAAATC
TACAAAGAATTCAAGGGAAAATGGGAAGACCTTCCTTCCCTTTTCACTAA
CCACGTGGCCTGGCATCGGGCTGTGTTGGCGTTGGGGAGAGAGGAGGGGA
TTGTGTGGGAGGTGTTGGATGGAGTGTTATTGAAGGAGGGGGGGAAGGAG
GGAGGGACAGTGGCACCGGCGACGCCGTTGGCCTTGGCAGACGCGGCAAG
CTTGTTGTGGAGAATGATGTTGATGGAGGACGAGGGAGAGGAGGAGGGAG
AGAGGGGGGGAGGCAAGGAGAGAGGGCGGGAGAGGAGGAAATGGGAGGAA
TTGCGGACGTGGTATGGGGATGGGGGGTACGAGACCATGCACACCACTAG
CTTTAATGACGTCCACATGATGATGTGTCTCTCAGTCACTGACATCCCCG
CCGCCAAAGCCTCTCTCTCATCCATGAAGAGACACGCTGCTGCCAGCCTA
CCCCAACAACAGCAGCAGCTCAAGCAGCAACTCAGGGAACTGAGGCAGCA
GCACGTACAACAAGAGCAATGGCCTCGATGGTGGGAGGTTGTCTATGGGA
TAGGACAGCTTGTGCGAGTGTTGAAAATACCCACATTATCTGACTGGCTT
CAACGGACCTTTCGGGAGGAGGAGAGGGAGGGAGGGAGGGAAGGAGGGAA
AAAGAGACAGGCACGACACTTCTCTTCTTCCTCCTCCTCCGGGTTGCCCT
TCCTCCTCCCGCAACCCACGAACAGCTACGTTCTCTCTGAAGTGGGATTG
GACATAAGTGAGGCCTTAATTCATTATGTACAAGGCAATTATTCCCAAAC
TGTAAAGTTGCTTTCCTCTTCCTCGAGTCGGTGGCATTTGATTGGAGGCT
CGCATGCACAGAGGGATGTGCTGAAATTAACACTGATTAGTGCGTGTTTA
AAAATGGACACTGATTTAAATTTGGGTCGGAGATTATTGGCTGAAAGAGC
GATGGAGAAAGACGAATGGAATGAGGAGGGTGTGTGGACGTTGTTGAGGA
GGGTGGCGGAAAGGAGGAGGAGGAGAAGTGGGAGAGAAAGAGAGGACGAC
ACGGAGGAGTTGGGGCGTAGGGAAGTATGGTTGGAAACGGCGGAGTTGTG
A
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protein sequence of NO19G01340.1

>NO19G01340.1-protein ID=NO19G01340.1-protein|Name=NO19G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=717bp
MARPPYLGLLPALAALRLFMSVYIVAVLTFASSRDAIGYPSSSSTTSSTQ
SFPSVPSDLRTSDAWGPISTPVPPEAITLFNEAVRSYAGLRGQVLEPLLE
LTTSTPFSLSLNSSSSYLMAHIYRGSILLLSTGVLKNSPLVRESYHAAAA
FFMDLPPSHHLSHEQQLRHQQHQQQQQEYPYSSPTARERWYYLAFHALYY
PPTPDFALAAMYWEEVLAMNPRELLAVRSVHDAYIILGDSEGMKRSLARV
LSRWDLGEERVNGREEALEDEKRSEPQKEKEEKEKEAKVENDYRMVRSMW
AFALEETGDLNRAALVARQVLSEDATDVTALHALIHTYEMTGRREEGEKI
YKEFKGKWEDLPSLFTNHVAWHRAVLALGREEGIVWEVLDGVLLKEGGKE
GGTVAPATPLALADAASLLWRMMLMEDEGEEEGERGGGKERGRERRKWEE
LRTWYGDGGYETMHTTSFNDVHMMMCLSVTDIPAAKASLSSMKRHAAASL
PQQQQQLKQQLRELRQQHVQQEQWPRWWEVVYGIGQLVRVLKIPTLSDWL
QRTFREEEREGGREGGKKRQARHFSSSSSSGLPFLLPQPTNSYVLSEVGL
DISEALIHYVQGNYSQTVKLLSSSSSRWHLIGGSHAQRDVLKLTLISACL
KMDTDLNLGRRLLAERAMEKDEWNEEGVWTLLRRVAERRRRRSGREREDD
TEELGRREVWLETAEL*
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Synonyms
Publications