NO19G01300, NO19G01300 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G01300
Unique Name	NO19G01300
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1558
Alignment location	chr19:408869..410426 +

Link to JBrowse

Properties


Property Name	Value
Description	Short-chain dehydrogenase reductase sdr

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:408869..410426 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036291	NAD(P)-bd_dom_sf
IPR002347	Glc/ribitol_DH

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Homology

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BLAST of NO19G01300 vs. NCBI_GenBank
Match: EWM23645.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 420.6 bits (1080), Expect = 3.800e-114
Identity = 212/285 (74.39%), Postives = 234/285 (82.11%), Query Frame = 0

Query:    1 MASKYQHLDPKKLCVFITGATAGFGQATALRFLASGARVVALGRRADRLEAXXXXXXXXXXXXXXXXXXXXGKEGRLHTIAADVSDTEGMKKAVASLPLSFKEVDVLVNNAGFAAGLGMAHECNLEDWHAMVETNIKGVLTTTNLLLPGMVERKKGHVVMMGSVASRYPYPGGNVYGATKAFIHQFAMNLRADLLGKNVRVTNLLPGMCETEFSLVRFGGDEERARKVYEGMKALSAEDMAEVVYWTTTLPAHVNVNALEVMPTQQAFSPFAVAREKKEGEDGGK 286
            MA KY HLDP++LCVFITGATAGFGQATALRFLA GARVVALGRRA+RLEA                    G+  RLHTI ADV D EGMK A+ +LP +F++VDVLVNNAGFAAGLG+AHE +LEDWHAMVETNIKGVL TT+LLLPGMV RK+GHVVMMGSVASRYPYPGGN YG TKAF+HQFAMNLRADL G NVRVTN+LPGMCETEFSLVRF GDE RA+KVY+GM  L+AED+AEVVYWTTTLPAHVNVNALE+MP QQAF+PFAV+R        GK
Sbjct:    1 MAGKYPHLDPRQLCVFITGATAGFGQATALRFLAGGARVVALGRRAERLEA---LARLHQEQEHGSGEGPRGESERLHTIQADVGDVEGMKAALGALPPAFRDVDVLVNNAGFAAGLGLAHESSLEDWHAMVETNIKGVLNTTHLLLPGMVARKRGHVVMMGSVASRYPYPGGNCYGGTKAFVHQFAMNLRADLAGTNVRVTNVLPGMCETEFSLVRFKGDEARAKKVYDGMTPLTAEDIAEVVYWTTTLPAHVNVNALEIMPVQQAFAPFAVSRRSPSPLSKGK 282

[Close]

BLAST of NO19G01300 vs. NCBI_GenBank
Match: XP_005854840.1 (short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana CCMP526] >EKU21520.1 short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 419.9 bits (1078), Expect = 6.500e-114
Identity = 212/285 (74.39%), Postives = 234/285 (82.11%), Query Frame = 0

Query:    1 MASKYQHLDPKKLCVFITGATAGFGQATALRFLASGARVVALGRRADRLEAXXXXXXXXXXXXXXXXXXXXGKEGRLHTIAADVSDTEGMKKAVASLPLSFKEVDVLVNNAGFAAGLGMAHECNLEDWHAMVETNIKGVLTTTNLLLPGMVERKKGHVVMMGSVASRYPYPGGNVYGATKAFIHQFAMNLRADLLGKNVRVTNLLPGMCETEFSLVRFGGDEERARKVYEGMKALSAEDMAEVVYWTTTLPAHVNVNALEVMPTQQAFSPFAVAREKKEGEDGGK 286
            MA KY HLDP++LCVFITGATAGFGQATALRFLA GARVVALGRRA+RLEA                    G+  RLHTI ADV D EGMK A+ +LP +F++VDVLVNNAGFAAGLG+AHE +LEDWHAMVETNIKGVL TT+LLLPGMV RK+GHVVMMGSVASRYPYPGGN YG TKAF+HQFAMNLRADL G NVRVTN+LPGMCETEFSLVRF GDE RA+KVY+GM  L+AED+AEVVYWTTTLPAHVNVNALE+MP QQAF+PFAV+R        GK
Sbjct:    7 MAGKYPHLDPRQLCVFITGATAGFGQATALRFLAGGARVVALGRRAERLEA---LARLHQEQEHGSGEGPRGESERLHTIQADVGDVEGMKAALGALPPAFRDVDVLVNNAGFAAGLGLAHESSLEDWHAMVETNIKGVLNTTHLLLPGMVARKRGHVVMMGSVASRYPYPGGNCYGGTKAFVHQFAMNLRADLAGTNVRVTNVLPGMCETEFSLVRFKGDEARAKKVYDGMTPLTAEDIAEVVYWTTTLPAHVNVNALEIMPVQQAFAPFAVSRGSPSPLSKGK 288

[Close]

BLAST of NO19G01300 vs. NCBI_GenBank
Match: WP_101249672.1 (KR domain-containing protein [Telmatospirillum siberiense] >PKU25617.1 NAD(P)-dependent oxidoreductase [Telmatospirillum siberiense])

HSP 1 Score: 307.8 bits (787), Expect = 3.600e-80
Identity = 152/264 (57.58%), Postives = 187/264 (70.83%), Query Frame = 0

Query:   15 VFITGATAGFGQATALRFLASGARVVALGRRADRLEAXXXXXXXXXXXXXXXXXXXXGKEGRLHTIAADVSDTEGMKKAVASLPLSFKEVDVLVNNAGFAAGLGMAHECNLEDWHAMVETNIKGVLTTTNLLLPGMVERKKGHVVMMGSVASRYPYPGGNVYGATKAFIHQFAMNLRADLLGKNVRVTNLLPGMCETEFSLVRFGGDEERARKVYEGMKALSAEDMAEVVYWTTTLPAHVNVNALEVMPTQQAFSPFAVAREKK 279
            +FITGAT+GFG A A RF   GAR+V LGRRADRLEA                         +H +A D+ D E + +A A+LP  F ++DVL+NNAG A GL MA + +L+DW AMV+TNIKG++  T   LPGMVERK+GH++ MGSVA  YPYPGGNVYG TKAF+ QF++NLRA+LLG  VRVTN+ PGMCETEFS+VRF GD  +A  VY GMK LSA+D+AE ++W   LPAH+N+N LE+MP  QAFSPFAV RE K
Sbjct:    9 IFITGATSGFGAAAARRFAGDGARLVLLGRRADRLEALKSELKVP-----------------VHVLALDIRDREAVTEAFATLPKDFAQIDVLLNNAGLAVGLEMAPKTDLDDWDAMVDTNIKGLMYCTRSALPGMVERKRGHIINMGSVAGTYPYPGGNVYGGTKAFVEQFSLNLRAELLGSKVRVTNIKPGMCETEFSVVRFRGDASKADNVYAGMKPLSADDIAECIHWVAALPAHMNINELEIMPVDQAFSPFAVHREGK 255

[Close]

BLAST of NO19G01300 vs. NCBI_GenBank
Match: WP_029042088.1 (SDR family NAD(P)-dependent oxidoreductase [Cucumibacter marinus])

HSP 1 Score: 302.4 bits (773), Expect = 1.500e-78
Identity = 154/271 (56.83%), Postives = 189/271 (69.74%), Query Frame = 0

Query:    5 YQHLDPKKLCVFITGATAGFGQATALRFLASGARVVALGRRADRLEAXXXXXXXXXXXXXXXXXXXXGKEGRLHTIAADVSDTEGMKKAVASLPLSFKEVDVLVNNAGFAAGLGMAHECNLEDWHAMVETNIKGVLTTTNLLLPGMVERKKGHVVMMGSVASRYPYPGGNVYGATKAFIHQFAMNLRADLLGKNVRVTNLLPGMCETEFSLVRFGGDEERARKVYEGMKALSAEDMAEVVYWTTTLPAHVNVNALEVMPTQQAFSPFAVAR 276
            YQ LDP +L VFITGAT+GFG+ATA RF  +GA+V+A GRR +RLEA                    G E   H    DVSD   ++  V +LP  F  V+V+V NAG A GL  AHE +L DW  M++TN+ G++ T   LLPGM+ER +GH+V MGSVAS YPYPGGNVY ATKAF+ QFA+ LRAD+ GKNVRVTN+ PGM ETEFS+VRF GD++ A KVYEGM  ++AED+AE ++W TTLP H NVN L++MP  QAFSPFAV R
Sbjct:    2 YQMLDPHELVVFITGATSGFGEATARRFAQAGAKVIATGRRRERLEA---------------LQAELGAE-NCHIAELDVSDNAAIEAVVNALPAGFAHVNVVVANAGLALGLAPAHETDLSDWQTMIDTNVTGLVQTVRALLPGMIERGEGHIVTMGSVASDYPYPGGNVYAATKAFVKQFALALRADINGKNVRVTNIEPGMTETEFSVVRFEGDQQAADKVYEGMTPMTAEDIAESIFWVTTLPRHFNVNRLQMMPVAQAFSPFAVHR 256

[Close]

BLAST of NO19G01300 vs. NCBI_GenBank
Match: WP_071545125.1 (SDR family NAD(P)-dependent oxidoreductase [Pseudodesulfovibrio hydrargyri] >OIQ49627.1 NADP-dependent 3-hydroxy acid dehydrogenase YdfG [Pseudodesulfovibrio hydrargyri])

HSP 1 Score: 301.6 bits (771), Expect = 2.600e-78
Identity = 153/263 (58.17%), Postives = 182/263 (69.20%), Query Frame = 0

Query:   15 VFITGATAGFGQATALRFLASGARVVALGRRADRLEAXXXXXXXXXXXXXXXXXXXXGKEGRLHTIAADVSDTEGMKKAVASLPLSFKEVDVLVNNAGFAAGLGMAHECNLEDWHAMVETNIKGVLTTTNLLLPGMVERKKGHVVMMGSVASRYPYPGGNVYGATKAFIHQFAMNLRADLLGKNVRVTNLLPGMCETEFSLVRFGGDEERARKVYEGMKALSAEDMAEVVYWTTTLPAHVNVNALEVMPTQQAFSPFAVAREK 278
            + ITGATAGFGQA A RF A G  +V  GRR  RLEA                         +HT+  DV D    ++AV SLP +F  +DVLVNNAG A GL  A  C+L+DW AM++TNIKG+   T  +LPGMVER  GHVV +GSVA  YPYPGGN YG TKAF++ F+ NLRADLLG  VRVTN+ PGMCETEFS+VRF GD+  A KVYEG+  ++ ED+AE V+WTT LPAHVN+NALEVMP QQAFSPFAV+R+K
Sbjct:    5 ILITGATAGFGQAMARRFAAEGWNLVITGRRVQRLEALKAEL----------------APAEVHTLDFDVRDRAACEQAVKSLPAAFANIDVLVNNAGLALGLEPAQACDLDDWEAMIDTNIKGLTYITRAVLPGMVERNAGHVVNLGSVAGTYPYPGGNCYGGTKAFVNHFSKNLRADLLGTRVRVTNIEPGMCETEFSVVRFKGDKASADKVYEGISPITPEDIAECVFWTTNLPAHVNINALEVMPVQQAFSPFAVSRDK 251

[Close]

BLAST of NO19G01300 vs. NCBI_GenBank
Match: WP_014323279.1 (SDR family NAD(P)-dependent oxidoreductase [Desulfovibrio desulfuricans] >EGB15853.1 short-chain dehydrogenase/reductase SDR [Desulfovibrio desulfuricans ND132])

HSP 1 Score: 300.1 bits (767), Expect = 7.500e-78
Identity = 149/263 (56.65%), Postives = 181/263 (68.82%), Query Frame = 0

Query:   15 VFITGATAGFGQATALRFLASGARVVALGRRADRLEAXXXXXXXXXXXXXXXXXXXXGKEGRLHTIAADVSDTEGMKKAVASLPLSFKEVDVLVNNAGFAAGLGMAHECNLEDWHAMVETNIKGVLTTTNLLLPGMVERKKGHVVMMGSVASRYPYPGGNVYGATKAFIHQFAMNLRADLLGKNVRVTNLLPGMCETEFSLVRFGGDEERARKVYEGMKALSAEDMAEVVYWTTTLPAHVNVNALEVMPTQQAFSPFAVAREK 278
            + ITGATAGFGQA A RF A G  +V  GRRA RLE                         ++HT+  DV D E   KA+  LP  F  +DVLVNNAG A GL  A  C+L+DW  M++TNIKG+   T  +LPGMVER  GHVV +GSVA  YPYPGGN YG TKAF++ F+ NLRADLLG  VRVTN+ PG+CETEFS+VRF GD+  A KVYEG + ++A+D+AE V+WTT LPAHVN+N+LEVMP QQAF+PFA+AR+K
Sbjct:    5 ILITGATAGFGQAMARRFAAEGWNLVITGRRAQRLEELKAAL----------------SPAKVHTVNFDVRDREACAKAIEDLPAEFAAIDVLVNNAGLALGLEPAQACDLDDWETMIDTNIKGLTFMTRAVLPGMVERNAGHVVNLGSVAGNYPYPGGNCYGGTKAFVNHFSKNLRADLLGTGVRVTNIEPGLCETEFSVVRFKGDKAAADKVYEGTRPITADDIAECVFWTTNLPAHVNINSLEVMPVQQAFAPFAIARDK 251

[Close]

BLAST of NO19G01300 vs. NCBI_GenBank
Match: WP_076023511.1 (SDR family NAD(P)-dependent oxidoreductase [Polynucleobacter sphagniphilus] >OLY96330.1 NADP-dependent 3-hydroxy acid dehydrogenase [Polynucleobacter sphagniphilus])

HSP 1 Score: 295.4 bits (755), Expect = 1.900e-76
Identity = 149/264 (56.44%), Postives = 188/264 (71.21%), Query Frame = 0

Query:   15 VFITGATAGFGQATALRFLASGARVVALGRRADRLEAXXXXXXXXXXXXXXXXXXXXGKEGRLHTIAADVSDTEGMKKAVASLPLSFKEVDVLVNNAGFAAGLGMAHECNLEDWHAMVETNIKGVLTTTNLLLPGMVERKKGHVVMMGSVASRYPYPGGNVYGATKAFIHQFAMNLRADLLGKNVRVTNLLPGMCE-TEFSLVRFGGDEERARKVYEGMKALSAEDMAEVVYWTTTLPAHVNVNALEVMPTQQAFSPFAVAREK 278
            V +TGATAGFG+ATA RFLA G +V+ALGRR +RLEA                     ++ +L T+AADV D+  ++K  ASLP  F    +LVNNAG A GL  AH+ +L DW  M++TNIKG++  T   LPGMVERK GHV+ +GSVA+ YPYPGGNVYG TKAF+ QF++NLRADL+G  VRVT + PGMC  TEFS VRF GD+ +A  VY G+KALSA+D+AE ++W+ TLP+H+N+N LEVMP QQAF+PF V R K
Sbjct:    5 VLVTGATAGFGEATARRFLAHGHKVIALGRRVERLEALKVSLPAE-------------QQNKLLTLAADVCDSTAIEKLAASLPTDFANATILVNNAGLALGLEPAHQAHLSDWDRMIDTNIKGLVHMTRAFLPGMVERKCGHVINLGSVAANYPYPGGNVYGGTKAFVKQFSLNLRADLVGTPVRVTCIEPGMCSGTEFSNVRFKGDDAKAETVYTGVKALSADDVAEAIFWSATLPSHMNINVLEVMPVQQAFNPFNVYRTK 255

[Close]

BLAST of NO19G01300 vs. NCBI_GenBank
Match: WP_012330804.1 (MULTISPECIES: KR domain-containing protein [Methylobacterium] >ACA15387.1 short-chain dehydrogenase/reductase SDR [Methylobacterium sp. 4-46])

HSP 1 Score: 294.7 bits (753), Expect = 3.200e-76
Identity = 148/268 (55.22%), Postives = 181/268 (67.54%), Query Frame = 0

Query:    8 LDPKKLCVFITGATAGFGQATALRFLASGARVVALGRRADRLEAXXXXXXXXXXXXXXXXXXXXGKEGRLHTIAADVSDTEGMKKAVASLPLSFKEVDVLVNNAGFAAGLGMAHECNLEDWHAMVETNIKGVLTTTNLLLPGMVERKKGHVVMMGSVASRYPYPGGNVYGATKAFIHQFAMNLRADLLGKNVRVTNLLPGMCETEFSLVRFGGDEERARKVYEGMKALSAEDMAEVVYWTTTLPAHVNVNALEVMPTQQAFSPFAVAR 276
            LDP+ L VF+TGATAGFG A   RF  +GARV+  GRR DRL+A                        RLH +  DV+D   +  AV SLP  F   +V + NAG A GL  A E +L+DW  M+ TN+ G+  T   LLPGMV R +GHVV++GSVA  YPYPGGNVYGATKAF+ QFA+NLRADLLG NVRVTN+ PGM ETEFSLVRF GD  +A K YEG+ A+SAED+AE ++W+ TLP H+N+N +++MP  QAFSPFAV R
Sbjct:    5 LDPQTLTVFVTGATAGFGAALCRRFAEAGARVIGSGRRRDRLDALRAELGE-----------------RLHVLELDVTDRAAVLAAVESLPAGFDAPNVCIANAGLALGLAPAQEADLDDWDRMIATNVNGLAYTVRALLPGMVARDEGHVVLLGSVAGDYPYPGGNVYGATKAFVKQFALNLRADLLGSNVRVTNIEPGMAETEFSLVRFQGDAAKAAKTYEGVAAMSAEDIAETIFWSCTLPRHLNINRMQMMPVMQAFSPFAVKR 255

[Close]

BLAST of NO19G01300 vs. NCBI_GenBank
Match: WP_015928100.1 (KR domain-containing protein [Methylobacterium nodulans] >ACL56404.1 short-chain dehydrogenase/reductase SDR [Methylobacterium nodulans ORS 2060])

HSP 1 Score: 292.7 bits (748), Expect = 1.200e-75
Identity = 144/268 (53.73%), Postives = 181/268 (67.54%), Query Frame = 0

Query:    8 LDPKKLCVFITGATAGFGQATALRFLASGARVVALGRRADRLEAXXXXXXXXXXXXXXXXXXXXGKEGRLHTIAADVSDTEGMKKAVASLPLSFKEVDVLVNNAGFAAGLGMAHECNLEDWHAMVETNIKGVLTTTNLLLPGMVERKKGHVVMMGSVASRYPYPGGNVYGATKAFIHQFAMNLRADLLGKNVRVTNLLPGMCETEFSLVRFGGDEERARKVYEGMKALSAEDMAEVVYWTTTLPAHVNVNALEVMPTQQAFSPFAVAR 276
            LDP  L VF+TGATAGFG A   RF  +GARV+  GRR DRL+A                        R H +  DV+D + +  AV +LP  F   +V + NAG A GL  AHE  ++DW  M+ TN+ G+  T   LLPGMV R +GH+V++GSVA  YPYPGGNVYGATKAF+ QFA+NLRADLLG+NVRVTN+ PGM ETEFSLVRF GD ++A K YEG+ A+SAED+AE ++W+  LP H+N+N +++MP  QAFSPFAV R
Sbjct:    5 LDPATLTVFVTGATAGFGAALCRRFAEAGARVIGTGRRPDRLDALKAELGE-----------------RCHVMQLDVTDRDAVFAAVQALPAGFDAPNVCIANAGLALGLSPAHEAEIDDWDRMIATNVNGLAYTVRALLPGMVARDEGHIVLLGSVAGDYPYPGGNVYGATKAFVKQFALNLRADLLGRNVRVTNIEPGMAETEFSLVRFEGDADQAAKTYEGLTAMSAEDIAETIFWSCILPRHLNINRMQMMPVMQAFSPFAVKR 255

[Close]

BLAST of NO19G01300 vs. NCBI_GenBank
Match: WP_085125449.1 (SDR family NAD(P)-dependent oxidoreductase [Tistlia consotensis] >SMF68622.1 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [Tistlia consotensis USBA 355] >SNS01116.1 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [Tistlia consotensis])

HSP 1 Score: 292.4 bits (747), Expect = 1.600e-75
Identity = 144/270 (53.33%), Postives = 185/270 (68.52%), Query Frame = 0

Query:    6 QHLDPKKLCVFITGATAGFGQATALRFLASGARVVALGRRADRLEAXXXXXXXXXXXXXXXXXXXXGKEGRLHTIAADVSDTEGMKKAVASLPLSFKEVDVLVNNAGFAAGLGMAHECNLEDWHAMVETNIKGVLTTTNLLLPGMVERKKGHVVMMGSVASRYPYPGGNVYGATKAFIHQFAMNLRADLLGKNVRVTNLLPGMCETEFSLVRFGGDEERARKVYEGMKALSAEDMAEVVYWTTTLPAHVNVNALEVMPTQQAFSPFAVAR 276
            Q LDP ++  F+TG T+GFG+A A R++ +GA+VV  GRRADRL+                           H +  DV D E + +AVA LP  F+ +DVLVNNAG A GL  AH  + +DW  MV+TNIKG+L  T+ LLPGMVER +GHVV + S+A  YPYPGGNVYGATKAF+ QF++NLRADLLGKNVRVT++ PG+ ETEFS VRF G  ++A KVYE +K + AED+AE ++W TTLP H+N+N +E+MP  QAF P A+ R
Sbjct:    3 QTLDPAEITAFVTGVTSGFGKALARRYVGAGAKVVGTGRRADRLDELKVELGE-----------------NFHPVTLDVRDREAVLEAVAGLPSGFERIDVLVNNAGLALGLEPAHLVDFKDWDTMVDTNIKGLLHCTHALLPGMVERDRGHVVNLSSIAGSYPYPGGNVYGATKAFVTQFSLNLRADLLGKNVRVTSIEPGLAETEFSEVRFKGAADKAAKVYENVKPMVAEDIAESIFWVTTLPRHLNINRMEMMPVMQAFGPLAIHR 255

The following BLAST results are available for this feature:

BLAST of NO19G01300 vs. NCBI_GenBank

BLAST of NO19G01300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM23645.1	3.800e-114	74.39	short-chain dehydrogenase reductase sdr [Nannochlo...	[more]
XP_005854840.1	6.500e-114	74.39	short-chain dehydrogenase reductase sdr, partial [...	[more]
WP_101249672.1	3.600e-80	57.58	KR domain-containing protein [Telmatospirillum sib...	[more]
WP_029042088.1	1.500e-78	56.83	SDR family NAD(P)-dependent oxidoreductase [Cucumi...	[more]
WP_071545125.1	2.600e-78	58.17	SDR family NAD(P)-dependent oxidoreductase [Pseudo...	[more]
WP_014323279.1	7.500e-78	56.65	SDR family NAD(P)-dependent oxidoreductase [Desulf...	[more]
WP_076023511.1	1.900e-76	56.44	SDR family NAD(P)-dependent oxidoreductase [Polynu...	[more]
WP_012330804.1	3.200e-76	55.22	MULTISPECIES: KR domain-containing protein [Methyl...	[more]
WP_015928100.1	1.200e-75	53.73	KR domain-containing protein [Methylobacterium nod...	[more]
WP_085125449.1	1.600e-75	53.33	SDR family NAD(P)-dependent oxidoreductase [Tistli...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL013	nonsL013	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL012	nonsL012	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR034	ncniR034	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR039	ngnoR039	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR037	ngnoR037	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK004482	NSK004482	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO19G01300.1	NO19G01300.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599059	gene_7524	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100165g16	gene6811	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO19G01300.1	NO19G01300.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO19G01300 ID=NO19G01300|Name=NO19G01300|organism=Nannochloropsis oceanica|type=gene|length=1558bp
CCAAGCCACAGGTCTACACTACCAGACGGCCCAGCCGTCCCTACCTACCT
CCCTCCCTCCCTACTCGAACGCAAAGCAATAATGGCGAGTAAATACCAGC
ATTTGGACCCCAAGAAGCTCTGCGTCTTCATCACGgtgggtgtcgtggaa
gcaaggaagggagcgagggagcgaaggaggaagggaagaagaagcactga
ctagaataaactgcttaattgtccctccctccctcctttccctcctctcc
tatcttgcacttaattgctaccgttgtccaatgcctcaacgcaaccattc
attgtatttctcgccagaacccctcgtatattaatcctcataatacagtc
acttattgaaccctaccttcttcctttccatctctttctccataagGGTG
CCACCGCCGGATTCGGACAAGCCACCGCCCTCCGTTTCCTCGCTAGTGGC
GCCCGCGTTGTTGCCTTGGGGCGACGTGCCGACCGCTTGGAAGCCCTACG
CTCTCTCCACAACGCTCAACAGCAGCAGCAGAGCGGGGAGGGGGGAAGGA
TGGAGGGGAAGGAAGGGAGGTTGCATACCATAGCGGCAGACGTCTCGGAT
ACAGAGGGGATGAAGAAGGCAGTAGCTTCTCTCCCTCTTTCATTCAAAGA
GGTTGACGTATTGGTGAACAATGCGGGGTTTGCTGCTGGGTTGGGCATGG
CACATGAATGTAACTTGGAAGACTGGCATGCGATGGTCGAGACGAACATC
AAGGGGGTCTTGACCACCACCAATCTGTTGTTGCCTGGGATGGTAGAGCG
CAAAAAAGGCCACGTTGTGATGATGGGCTCGGTAGCATCAAGGTATCCTT
ACCCGGGGGGCAACGTCTATGGAGCAACCAAAGCATTCATACACCAATTT
GCCATGAACCTGCGGGCGGATTTATTGGGGAAGAACGTGAGGGTTACCAA
CCTCCTGCCGGGTATGTGCGAGACGGAGTTTAGTTTGGTCCGATTTGGGG
GGGACGAGGAACGGGCAAGGAAGGTTTATGAAGGAATGAAGGCTCTGAGT
GCGGAGGATATGGCGGAGGTGGTGTACTGGACGACGACGTTGCCGGCCCA
TGTGAATGTGAACGCGTTAGAGGTGATGCCGACGCAGCAGGCGTTCTCGC
CTTTTGCAGTGGCGAGAGAGAAAAAGGAGGGGGAAGATGGGGGGAAATAA
GACGAAAACAGGGTGTGAATATTGAAACATATAGAGGGAGAAACAAGGAA
AGGATGAGACACCACACATATTGAGAGGTGAAGATAAGAAATATGAAGCG
AGGGAGGAGGAGTAATATGGGGGATGGAAAATGAGATTGGCAGGGCAGTG
ATACGAACAATTAAAAAAATGGTGACACAGAGTAGATGGCGAGGTACAAC
GCCACCGAAGGCAGCCGCCCACATTGGTCAAGCAGCGAAGAGAGCCAAGA
TGGGCCGCAAGCCCCAAAAACAAACCGCTTGTTTACTTTGCGTCCCGGGC
ACCACACGGGCACCGCGTCCCGCAGCGAATGAATCGGCAGAGTTGAGTTG
CATGCGTC

protein sequence of NO19G01300.1

>NO19G01300.1-protein ID=NO19G01300.1-protein|Name=NO19G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MASKYQHLDPKKLCVFITGATAGFGQATALRFLASGARVVALGRRADRLE
ALRSLHNAQQQQQSGEGGRMEGKEGRLHTIAADVSDTEGMKKAVASLPLS
FKEVDVLVNNAGFAAGLGMAHECNLEDWHAMVETNIKGVLTTTNLLLPGM
VERKKGHVVMMGSVASRYPYPGGNVYGATKAFIHQFAMNLRADLLGKNVR
VTNLLPGMCETEFSLVRFGGDEERARKVYEGMKALSAEDMAEVVYWTTTL
PAHVNVNALEVMPTQQAFSPFAVAREKKEGEDGGK*

Synonyms

Publications