NO19G01260, NO19G01260 (gene) Nannochloropsis oceanica

Overview
NameNO19G01260
Unique NameNO19G01260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1953
Alignment locationchr19:396356..398308 +

Link to JBrowse

Properties
Property NameValue
DescriptionPlasma-membrane choline transporter family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:396356..398308 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007603Choline_transptr-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO19G01260 vs. NCBI_GenBank
Match: CCA17676.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 172.6 bits (436), Expect = 4.100e-39
Identity = 136/480 (28.33%), Postives = 226/480 (47.08%), Query Frame = 0
Query:  176 TAP----RDLWALLLFVLHMCFLIALAIRLGLPS-LGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALA--WLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIAAAAEN-----------GKHQQHQTAGQHTLLCLF-LVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGI---VGFVGVGFTRMFPYFFVGLPLPSL-FIGVVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            TAP     DLWA +LF+     +   A+  GLP+ L   E +   +  +                  +  +L+ + A  +AL+  W+  ++ ++  +I  T++  V +  +   L      P+  L+F LLA   +C +Y  Q+RI  +SANL  AC A ++   +F VA L +  Q  +  +WS +A+GVY     +  N                    G  T   +F +++SLYWG +V QN+L CTV G +A+WWY        V  AL R+   S GSIC+GS FV  +++ + + R +                     +GCL +  L C+E++    N + +++VG++G  +R   +  M LF ++GW  V+ND L  + L  G++ VG +   +G + V F+    +   G        IG   F+ G    + + +V+ +++ TVFVC+A DP  LQ N P E+  L + W
Sbjct:   41 TAPPSRCNDLWAAILFLTQAIAIGFFAVWKGLPAVLDRMEKSKHGSKEYDFGN--------------FFILLMGIFATTVALSGFWMKLLMSYAESMIRVTLWCNVGLVIVFG-LGTFPASPVASLIFLLLAAVNICYIYAVQNRIGFASANLKCACAATIKFTGVFWVALLLVIQQIFWLTLWSTSAIGVYGMFKESHPNCQGFLKDNTRYNVDASGDCGGAGTGFIVFAMLISLYWGQQVLQNILTCTVAGVVATWWYRSGEDGITVG-ALYRSVTTSFGSICLGSLFVSILQAMQTMARML-------REKAREEDNAALACVGCLAECILGCLESIMEYLNMWAYIYVGIYGRDFRTSAKAVMDLFRSRGWTAVINDDLASSALTFGAIGVGCVASCIGLIAVYFSPASWFDAFGTKKSGYGVIGAAAFIAGTSVSMTMANVVLASLHTVFVCFAEDPAALQHNHPREYEDLISGW 497          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: ETK83515.1 (hypothetical protein L915_11285 [Phytophthora parasitica] >ETL36924.1 hypothetical protein L916_11186 [Phytophthora parasitica] >ETP13252.1 hypothetical protein F441_11514 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 170.6 bits (431), Expect = 1.600e-38
Identity = 139/474 (29.32%), Postives = 226/474 (47.68%), Query Frame = 0
Query:  175 TTAPRDLWALLLFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSF-LSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIAAA----------AENGKHQQHQTAGQHTLLCLF-LVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVGVGFTRMFPY-FFVGLPLPSLFIG---VVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            T    D +  ++F+ ++  L  LA   G+P+L   E    + S   IP  +S            +  LL ++  +++LAW+  ++ ++S +I   ++    V  +L+F +S         L F  +A   +  +Y  Q+RI  +SANL  AC  L +H  +F VA + +  Q ++  +W VA+LG++     A          A  G++      G      LF +++S+YWG +V QN+L CT  G +A+WWY P+     V  AL R+   S GSIC GS  V  +++ R +                     G   L C+ +  LSC+  +    N + +V+VGV+GY +R  G+  M LF  +GW  V+ND L  + L  G+  VG +   VG+   R  P  +F  L       G   ++GF++G+   L+L  V+ +A+ T+FVC+A DP     N P E+  L A W
Sbjct:   38 TAKCNDAFFAVVFLANVLILGILAFWKGVPALK--EDMGRNRSDGRIPQGHSV--------AWTMIGLLCVVGTVLSLAWIKLLMSYASSMIRVALWLN--VGMVLAFAVSTFSVNVWAALFFLFMAAINVWYIYAVQNRIGFASANLKAACAGLKQHSAVFVVAFVLVLQQLVWMFLWGVASLGMHKLFVEADPNCDREIDLASRGRNHGGLCVGLPAYAALFYMLVSVYWGQQVLQNILTCTTAGVVATWWYQPNAQKATVG-ALYRSVTTSFGSICFGSLIVAVLQALRTM-------ADMAKRRASEENNGGLACLACMAECILSCLANIVEYMNHWAYVYVGVYGYPFRTSGKAVMDLFNNRGWTAVINDDLTSSALSFGAFGVGVVTCCVGLLMVRFSPVEWFTALGSRMGVYGTMALIGFMVGLSMALILAHVIIAALHTIFVCFAEDPVAFNRNHPKEYEELVAGW 491          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: OWZ08302.1 (putative membrane protein [Phytophthora megakarya])

HSP 1 Score: 170.6 bits (431), Expect = 1.600e-38
Identity = 121/395 (30.63%), Postives = 193/395 (48.86%), Query Frame = 0
Query:  254 WLYFMLQWSSLLIHSTIYTTVLVSSLLSF-LSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIAAA----------AENGKHQQHQTAGQHTLLCLF-LVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVGVGFTRMFPY-FFVGLPLPSLFIG---VVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            W+  ++ ++S +I   ++    V  +L+F +S         L+F ++A   +  +Y  Q RI  +SANL  AC  L +H  +F +A   + LQ  +  +W VA+LG++     A          A  G+       G      LF +++S+YWG +V QN+L CT  G +A+WWY P+     V  AL R+   S GSIC GS  V  +++ R +                     G   L C+ +  LSC+  +    N++ +V+VGV+GY +R  G+  M LF  +GW  V+ND L    L  G++ VG +   VG+   R  P  +F  L   +   G   ++GF++G+   L+L  V+ +A+ T+FVC+A DP     N P E+  L A W
Sbjct:   79 WIKLLMSYASSMIRVALWLN--VGMVLAFAVSTFSVSVWAALMFLVMAALNVWYIYAVQDRIGFASANLKAACAGLKQHSAVFVLAFFLVVLQLAWMFLWGVASLGMHQLFVEADPDCDQEIDLASRGRSHGGLCVGLPAYAALFYMLVSVYWGQQVLQNILTCTTAGVVATWWYQPNARKATVG-ALYRSVTTSFGSICFGSLIVAVLQALRTM-------ADMAKRRASEENNGGLACLACMAECILSCLANVMEYVNQWAYVYVGVYGYPFRTSGKAVMDLFTNRGWTAVINDDLTSGALSFGALGVGIVTCCVGLLMVRFSPMEWFTALGSRTSVYGTMALIGFMVGISMALILAHVIIAALHTIFVCFAEDPVAFNRNHPKEYDDLVAGW 463          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: XP_024577408.1 (hypothetical protein L915_11285 [Plasmopara halstedii] >CEG41039.1 hypothetical protein L915_11285 [Plasmopara halstedii])

HSP 1 Score: 169.9 bits (429), Expect = 2.700e-38
Identity = 142/469 (30.28%), Postives = 226/469 (48.19%), Query Frame = 0
Query:  180 DLWALLLFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLLGRPIGFLLF-ALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIAAAAENGKHQQHQTAGQHTL--LCL---------FLVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVGVGFTRMFP--YFFVGLPLPSLF--IGVVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            D +  ++F+ ++  L  LA   GLP+L   E    + S   IP  +S          L +  LL ++   ++LAW+  +  ++S +I  TI   + V  +L+F        +   LF A LA   +C +Y  Q+RI  +SANL  AC  L EH  +F VA + +  Q  +  +W VA+LG++     A  N   +    +       LC+         ++++ LYWG +V QN+L CT  G IA+WWY P+     V  AL R+   S GSIC GS  V  +++ R +                     G   L C+ +  LS +  +    N++ +V+VGV+GY +R+ G+  M LF  +GW  V+ND L  + L  G++ VG +   VG+   R  P  +F       S +  + ++GFV+G+   L+L  V+ +A+ T+FVC+A DP     N P  +  L A W
Sbjct:   43 DAFFAVMFLANVIILSILAFFKGLPTL--TEEMDKNRSDGRIPNGHSV--------ALTMIALLCVIGTALSLAWVKLLTTYASSMI--TIALWLNVGMVLAFAVSTFSVNVWAALFLAGLAALNVCYIYAVQNRIGFASANLKAACAGLKEHSAIFAVAFVLVLQQLAWMFLWYVASLGMHQLFLEADPNCDREIDLASRGRNRGGLCVEFPAYAAIFYMLVGLYWGQQVLQNILTCTTAGVIATWWYQPNAQKATVG-ALYRSITTSFGSICFGSLIVAVLQALRTMADAAKRRAREERSG-------GLACLACMAECVLSFLAGVMEYVNQWAYVYVGVYGYPFRKSGKAVMDLFTNRGWTAVINDDLTSSALTFGAMGVGIVTCCVGMLMVRYSPMEWFSALGSRTSAYSSMALIGFVVGLSVALILAHVIIAALHTIFVCFAEDPVAFNRNHPKHYDELVAGW 491          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: ETI43437.1 (hypothetical protein F443_11597 [Phytophthora parasitica P1569] >ETL90098.1 hypothetical protein L917_11089 [Phytophthora parasitica] >ETM43387.1 hypothetical protein L914_11121 [Phytophthora parasitica] >ETO72107.1 hypothetical protein F444_11669 [Phytophthora parasitica P1976] >ETP46789.1 hypothetical protein F442_07042 [Phytophthora parasitica P10297] >KUF96007.1 PNS1 protein [Phytophthora nicotianae])

HSP 1 Score: 169.5 bits (428), Expect = 3.500e-38
Identity = 138/469 (29.42%), Postives = 225/469 (47.97%), Query Frame = 0
Query:  180 DLWALLLFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSF-LSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIAAA----------AENGKHQQHQTAGQHTLLCLF-LVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVGVGFTRMFPY-FFVGLPLPSLFIG---VVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            D +  ++F+ ++  L  LA   G+P+L   E    + S   IP  +S            +  LL ++  +++LAW+  ++ ++S +I   ++    V  +L+F +S         L F  +A   +  +Y  Q+RI  +SANL  AC  L +H  +F VA + +  Q ++  +W VA+LG++     A          A  G++      G      LF +++S+YWG +V QN+L CT  G +A+WWY P+     V  AL R+   S GSIC GS  V  +++ R +                     G   L C+ +  LSC+  +    N + +V+VGV+GY +R  G+  M LF  +GW  V+ND L  + L  G+  VG +   VG+   R  P  +F  L       G   ++GF++G+   L+L  V+ +A+ T+FVC+A DP     N P E+  L A W
Sbjct:   43 DAFFAVVFLANVLILGILAFWKGVPALK--EDMGRNRSDGRIPQGHSV--------AWTMIGLLCVVGTVLSLAWIKLLMSYASSMIRVALWLN--VGMVLAFAVSTFSVNVWAALFFLFMAAINVWYIYAVQNRIGFASANLKAACAGLKQHSAVFVVAFVLVLQQLVWMFLWGVASLGMHKLFVEADPNCDREIDLASRGRNHGGLCVGLPAYAALFYMLVSVYWGQQVLQNILTCTTAGVVATWWYQPNAQKATVG-ALYRSVTTSFGSICFGSLIVAVLQALRTM-------ADMAKRRASEENNGGLACLACMAECILSCLANIVEYMNHWAYVYVGVYGYPFRTSGKAVMDLFNNRGWTAVINDDLTSSALSFGAFGVGVVTCCVGLLMVRFSPVEWFTALGSRMGVYGTMALIGFMVGLSMALILAHVIIAALHTIFVCFAEDPVAFNRNHPKEYEELVAGW 491          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: KUF88954.1 (Enolase [Phytophthora nicotianae])

HSP 1 Score: 169.5 bits (428), Expect = 3.500e-38
Identity = 138/469 (29.42%), Postives = 225/469 (47.97%), Query Frame = 0
Query:  180 DLWALLLFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSF-LSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIAAA----------AENGKHQQHQTAGQHTLLCLF-LVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVGVGFTRMFPY-FFVGLPLPSLFIG---VVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            D +  ++F+ ++  L  LA   G+P+L   E    + S   IP  +S            +  LL ++  +++LAW+  ++ ++S +I   ++    V  +L+F +S         L F  +A   +  +Y  Q+RI  +SANL  AC  L +H  +F VA + +  Q ++  +W VA+LG++     A          A  G++      G      LF +++S+YWG +V QN+L CT  G +A+WWY P+     V  AL R+   S GSIC GS  V  +++ R +                     G   L C+ +  LSC+  +    N + +V+VGV+GY +R  G+  M LF  +GW  V+ND L  + L  G+  VG +   VG+   R  P  +F  L       G   ++GF++G+   L+L  V+ +A+ T+FVC+A DP     N P E+  L A W
Sbjct:   12 DAFFAVVFLANVLILGILAFWKGVPALK--EDMGRNRSDGRIPQGHSV--------AWTMIGLLCVVGTVLSLAWIKLLMSYASSMIRVALWLN--VGMVLAFAVSTFSVNVWAALFFLFMAAINVWYIYAVQNRIGFASANLKAACAGLKQHSAVFVVAFVLVLQQLVWMFLWGVASLGMHKLFVEADPNCDREIDLASRGRNHGGLCVGLPAYAALFYMLVSVYWGQQVLQNILTCTTAGVVATWWYQPNAQKATVG-ALYRSVTTSFGSICFGSLIVAVLQALRTM-------ADMAKRRASEENNGGLACLACMAECILSCLANIVEYMNHWAYVYVGVYGYPFRTSGKAVMDLFNNRGWTAVINDDLTSSALSFGAFGVGVVTCCVGLLMVRFSPVEWFTALGSRMGVYGTMALIGFMVGLSMALILAHVIIAALHTIFVCFAEDPVAFNRNHPKEYEELVAGW 460          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: XP_002901503.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY58559.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 169.1 bits (427), Expect = 4.600e-38
Identity = 138/469 (29.42%), Postives = 226/469 (48.19%), Query Frame = 0
Query:  180 DLWALLLFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSF-LSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIAAA----------AENGKHQQHQTAGQHTLLCLF-LVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVGVGFTRMFPY-FFVGLPLPSLFIG---VVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            D +  ++F+ ++  L  LA   G+P+L   E    + S   IP  +S            +  +L ++  +++LAW+  ++ ++S +I   ++    V  +L+F +S         L F ++A   +  +Y  Q+RI  +SANL  AC AL +H  +F VA + +  Q ++ L+W VA+LG++     A          A  G+       G      LF +++S+YWG +V QN+L CT  G +A+WWY P+     V  AL R+   S GSIC GS  V  +++ R +                     G   L C+    L C+  +    N + +V+VGV+GY +R  G+  M LF  +GW  V+ND L  + L  G++ VG +   VG+   R  P  +F  L       G   ++GF++G+   L+L  V+ +A+ T+FVC+A DP     N P E+  L A W
Sbjct:   43 DAFFAVMFLSNVLVLGILAFWKGVPALK--EDMGRNRSDGRIPQGHSV--------AWTMIGILCVVGTVLSLAWIKLLMSYASSMIRVALWLN--VGMVLAFAVSTFSVNVWAALFFLVMAAINVWYIYAVQNRIGFASANLKAACAALQQHSAVFVVAFVLVLQQLVWMLLWGVASLGMHKVFVEADPDCDREIDLASRGRSHGGLCVGLPAYAALFYMLVSVYWGQQVLQNILTCTTAGVVATWWYQPNAQKATVG-ALYRSVTTSFGSICFGSLIVAVLQALRTM-------ADMAKRRASEENNGGLACLACMAKCILGCLANIVEYINHWAYVYVGVYGYPFRTSGKAVMDLFNNRGWTAVINDDLTSSALSFGALGVGIVTCCVGMLMVRFSPVEWFTALGSRMGVYGTMALIGFMVGLSMALILAHVIIAALHTIFVCFAEDPVAFNRNHPKEYEDLVAGW 491          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: XP_009836061.1 (hypothetical protein H257_10993 [Aphanomyces astaci] >ETV74403.1 hypothetical protein H257_10993 [Aphanomyces astaci])

HSP 1 Score: 166.0 bits (419), Expect = 3.900e-37
Identity = 131/479 (27.35%), Postives = 237/479 (49.48%), Query Frame = 0
Query:  180 DLWALLLFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLLGRPIG--FLLFALLAL-------------TGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIAAAAENGKHQQHQTAGQ------HTLLCLFLVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVGVGFTRMFPY-FFVGLPLPS----LFIGVVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            D +  +LFV H+  +   A   GL  L  +E      ++H       T ++  +  L+  +V+ + L       W+  ++  +  +I   ++  V +    + +S+ +   +G  FLL A + +             +    +   Q+RI  +SA+L  AC AL  H+ +F +A LF+F+Q  + + WS++A+GVY    +A  +   +Q ++ G+        +   FL++S+YWG +V QNV+ CTV GT+A+WWY        VA +L R+   S GSIC GS  V  +++ R ++R +                 G   + CL +  L+C+E++   FN + + +VG++G+ +R  G+  M+LF+++GW  V+ND L    L +G+  VG + G +G+   +  P  + VG         +  G +GF+ G    ++L +++ +A+ T+FVC+A DP   Q + P  +  L   W
Sbjct:   45 DAFFAILFVGHLVAIAYFAFTSGLDYLKHFESEHPSQAAH----KSFTMVLGVSGGLIGFAVVFSAL-------WIQVLMACAENMIRFALWMNVGMMFGFAIMSMFVNPFMGLFFLLGAAINIWYCRPCRHVSSHVSWTSYINAVQNRIAFASAHLKLACVALSNHKSIFALALLFIFVQVAWLVTWSLSAVGVYQLFRSA--DPSCEQEESRGELCGGAGFNVTIFFLLVSVYWGQQVIQNVMTCTVAGTVATWWYNARTE-SAVAGSLYRSLTSSFGSICFGSLIVAVLQALRTIVRTIKNKAAEDDN-------VGLACVACLAECILNCIESLVEYFNMWAYTYVGIYGFDFRSAGKAVMQLFDSRGWTAVINDDLSSTALSIGAFGVGVLTGVIGLVVAKFAPVDWTVGFGADDTTRYVIFGGLGFIAGFSMAMILANLVITALHTIFVCFAEDPVSFQRSHPEHYNELILTW 502          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: XP_009837251.1 (hypothetical protein H257_11876 [Aphanomyces astaci] >ETV73376.1 hypothetical protein H257_11876 [Aphanomyces astaci])

HSP 1 Score: 164.9 bits (416), Expect = 8.600e-37
Identity = 138/491 (28.11%), Postives = 230/491 (46.84%), Query Frame = 0
Query:  179 RDLWALLLFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASI------------AAAAENGK--------------------HQQHQTAGQHTLLCLFLVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVG-----VGFTRMFPYFFVGLPLPSLFIGVVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            RD    +LF+ ++  +I L I  G        ++L  TS    P++ ST      T +LYL   L ++A +++LA L F ++++  +I   ++ +V++    +  +++       ++  ++ L  LC  Y  Q RI  ++ANL  A  A+ +H     VA +FL +Q  +  +W+ A +G+   +            A  A  G+                    +   Q      +   FL+LS +WG +V +N++  TV GT+A+WW+  D S      +L RA   SLGSIC GS  V  +++ R L                 +G C      C+    L C++++  TFNR+ FV+VG++GY + + GR  M+LF  +G+D ++ND L+G  L   +  VG +   +G     +  +  F Y    LPL  LF        G+G  ++ + V+ SAV T+FVC+A DP  LQ + P  F  L   W
Sbjct:   56 RDWPFAILFLGNIGAIIVLLIMYGSTVF----NSLNGTSKTAFPSSSSTFSSDNVTTILYLCAGLTVIAAVLSLAMLSFTIRYARQMIQIALWWSVVMFFGFAAFAVIKKNYTVAIVTGIIGLFALCYAYAVQDRIPFAAANLRAAGAAIRKHPSTHLVAFVFLLVQIAWVFVWAFAVVGITNKLTENSTPAPTSRTATVASGGRCIASAQCLTNYCTSGVCKEPNVYAQLKSTSYVAYFFLLLSFFWGVQVFKNIIHATVAGTVATWWFSSD-SKGATGASLGRATTTSLGSICFGSLIVAVLQTLRQLAE-----------EASRQGDCA----ACIAQCILGCLQSLMETFNRWAFVYVGIYGYKFMDAGRAVMQLFHDRGFDAIINDDLVGTALTFAAFGVGCLCALLGLVYYYIDVSNQFQYAEYILPLTGLF-------FGLGVAIIPMGVVDSAVATIFVCFAEDPVALQHSHPEHFNELMTEW 519          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: XP_009515161.1 (hypothetical protein PHYSODRAFT_474776 [Phytophthora sojae] >EGZ27886.1 hypothetical protein PHYSODRAFT_474776 [Phytophthora sojae])

HSP 1 Score: 162.5 bits (410), Expect = 4.300e-36
Identity = 128/423 (30.26%), Postives = 216/423 (51.06%), Query Frame = 0
Query:  220 TIPTNYSTQIIT--TTTHLLYLSVLLALLADLIALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIA--------AAAENGKHQQHQTAGQHTLLCLFLVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVGVGFTRMFPYFFVGLPLPSLFIGVVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            T P N S+++++   T  ++ +SV +A+++ ++AL  +  ++ ++ ++I   ++  V +S  L+    ++G     ++ AL+AL  LC     Q RI  + ANL  A  A+ +H   + V+ +F  +Q  + +IW++A LGV   IA                              FL+LS YWG +V +NV   TV GT+A++WY  + S    A +L R+   S GSIC GS  V  +++ RAL                  G      L C  +  L C++++   FNR+ +V+VG++GY + + G+   +LF+ +G+D ++ND LIGNVL   ++ VG I    GVG         V     + F+ ++GFVIG+G  +  ++V+ S+V T+FVC+A DP   Q + P  +A L   W
Sbjct:   10 TDPENNSSELLSGDDTKVVVAISVGMAVVSMVLALLMVKLIVAYARVMILFVLWFNVGISFALAAYGFVIGNIFIAIIGALIALLNLCYARAVQHRIPFAVANLRVAEGAIAKHWSTYIVSVVFTIVQIAWVVIWAMALLGVANKIAEDNPSXXXXXXXXXXXXXXXXXXXXXXXXXFLLLSFYWGLQVFKNVAHTTVAGTVATFWYNAE-SGGATAASLKRSTTTSFGSICFGSLIVAFLQALRALAES---------------GRQDGSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFQLFKQRGFDAIINDDLIGNVLGFAALGVGLIC--AGVGALIAETTDAVTFQNSTAFLAILGFVIGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEW 414          
The following BLAST results are available for this feature:
BLAST of NO19G01260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CCA17676.14.100e-3928.33conserved hypothetical protein [Albugo laibachii N... [more]
ETK83515.11.600e-3829.32hypothetical protein L915_11285 [Phytophthora para... [more]
OWZ08302.11.600e-3830.63putative membrane protein [Phytophthora megakarya][more]
XP_024577408.12.700e-3830.28hypothetical protein L915_11285 [Plasmopara halste... [more]
ETI43437.13.500e-3829.42hypothetical protein F443_11597 [Phytophthora para... [more]
KUF88954.13.500e-3829.42Enolase [Phytophthora nicotianae][more]
XP_002901503.14.600e-3829.42conserved hypothetical protein [Phytophthora infes... [more]
XP_009836061.13.900e-3727.35hypothetical protein H257_10993 [Aphanomyces astac... [more]
XP_009837251.18.600e-3728.11hypothetical protein H257_11876 [Aphanomyces astac... [more]
XP_009515161.14.300e-3630.26hypothetical protein PHYSODRAFT_474776 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL013nonsL013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR037ngnoR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01260.1NO19G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01260.1NO19G01260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01260 ID=NO19G01260|Name=NO19G01260|organism=Nannochloropsis oceanica|type=gene|length=1953bp
ATGGCAGCCTTGGACGCCTTGGAGATTTTTCTTGTAACGATCGCAGGCGT
TGTCGCTATATTTAGTATCGTCATCTGCTGTTCAGCCGCATGTCTGGCCT
GCTGCGGGGGTGCCTTTACACCCCTCTTTTGCTGGGCCGGGTGGATCCTA
GCCTGCTGCAACCCCTGGGGCGGACGCCCGTCTTCTTACCACGCAATGGG
TGGGCACGGGGGTGGTACTTTTACAACCGTCACCATCATCCCACCCCCAC
CCAATGTTGTAATTAGCAGCGACTTGCCACAGGCTTCGGCGCCGCCGGCA
ATGGCTGTTGCCGAGGCCATGCCGTGGCAGCAGCAGCACCACCACCACCA
CCTGAAACAACTCAATGAAACATTCTCCTCTGGAGTGGTGAGTGGGATCA
CCCTCGAAGGCAGTGCTCCACCTGCTGTTCCTCCCTCTTCCTCCCTCCCC
TCTATCTCTTACCAATATTCCACAAGCACAACCAGCAACATGACCACCAT
CAACGTCCCTCCCCCCCCACAAACCACTGCTCCACGCGACCTCTGGGCCC
TCCTCCTCTTCGTACTCCACATGTGCTTCCTCATCGCCCTCGCCATTCGC
CTCGGCCTTCCTTCTCTCGGTGTTTGGGAGCATGCCCTTGTCGATACTAG
CAGCCACACCATTCCCACGAACTACTCCACCCAAATAATCACCACCACCA
CCCACCTCCTCTATCTTTCCGTCCTCCTTGCCCTCCTCGCCGATCTTATA
GCCCTCGCCTGGCTCTATTTTATGCTACAATGGTCCTCCCTTCTAATCCA
CAGCACAATCTACACCACCGTCCTCGTCTCTTCCCTGCTCTCCTTCCTCT
CCCTCCTGCTAGGACGCCCCATCGGATTCCTTCTCTTCGCTTTGCTAGCC
CTCACGGGGCTCTGCCTCCTCTACGAGGAACAATCGCGTATCTTCCTCTC
CTCCGCTAATTTAGGTACTGCCTGTCGTGCCTTGCTCGAACATCGAAAAC
TATTCGGTGTCGCTTGTCTGTTCCTCTTCCTTCAATTTCTCTTTGCATTA
ATCTGGTCGGTGGCGGCCTTGGGTGTATATGCCTCCATCGCTGCTGCCGC
TGAAAATGGCAAGCATCAGCAGCATCAAACGGCAGGACAGCATACATTAT
TATGTCTTTTCCTCGTCCTTTCTCTGTACTGGGGGTCGGAGGTGTGTCAG
AATGTCTTAAAATGCACGGTGGTTGGCACGATTGCCTCCTGGTGGTATTT
TCCCGATGTTTCCTTTGAGCCTGTTGCGCCAGCGTTAGCGCGAGCAGCAG
GGCCGAGCTTGGGTAGTATTTGTGTGGGCTCTTTCTTTGTAGGGGGTATT
GAGAGTTTCAGAGCGCTGCTACGTGGGATGGGGGGGGGAAGGGGGGGAGG
AACATTATGTTGTTGTTGTCGAGGGATTTGTGGGTGTGGATTGCTTGGGT
GCCTGATAGATTATGCGCTATCGTGCGTGGAAGCGATGTGGCGGACATTT
AATCGGTTTACCTTTGTCTTTGTGGGGGTGTGGGGGTATGGGTACCGGGA
GGGTGGGCGGTTGGCCATGAAGCTGTTTGAGGCCAAGGGGTGGGATTTGG
TTTTGAATGATTACTTGATAGGAAATGTTTTATTTTTGGGGTCGGTCATG
GTAGGGGGTATTGTGGGGTTTGTGGGAGTGGGGTTTACACGTATGTTTCC
GTATTTCTTCGTCGGGCTACCGTTGCCTTCTTTGTTTATTGGCGTGGTTG
GGTTTGTGATAGGTGTAGGGAACTGCTTGGTGTTGGTGAGTGTTTTATCG
TCGGCGGTGGACACGGTATTCGTCTGTTATGCTGCCGATCCGGGCGTGTT
GCAGGTAAACCGGCCGGTAGAATTTGCATGTTTGGAGGCTGCGTGGGAGG
GAGGGAGGATGGGGGAGCAGACACGGTTGAATGCAGTACAAGTGATGATT
TGA
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protein sequence of NO19G01260.1

>NO19G01260.1-protein ID=NO19G01260.1-protein|Name=NO19G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp
MAALDALEIFLVTIAGVVAIFSIVICCSAACLACCGGAFTPLFCWAGWIL
ACCNPWGGRPSSYHAMGGHGGGTFTTVTIIPPPPNVVISSDLPQASAPPA
MAVAEAMPWQQQHHHHHLKQLNETFSSGVVSGITLEGSAPPAVPPSSSLP
SISYQYSTSTTSNMTTINVPPPPQTTAPRDLWALLLFVLHMCFLIALAIR
LGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLI
ALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLLGRPIGFLLFALLA
LTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFAL
IWSVAALGVYASIAAAAENGKHQQHQTAGQHTLLCLFLVLSLYWGSEVCQ
NVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGI
ESFRALLRGMGGGRGGGTLCCCCRGICGCGLLGCLIDYALSCVEAMWRTF
NRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVM
VGGIVGFVGVGFTRMFPYFFVGLPLPSLFIGVVGFVIGVGNCLVLVSVLS
SAVDTVFVCYAADPGVLQVNRPVEFACLEAAWEGGRMGEQTRLNAVQVMI
*
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Synonyms
Publications