NO19G01260, NO19G01260 (gene) Nannochloropsis oceanica

Overview
NameNO19G01260
Unique NameNO19G01260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1953
Alignment locationchr19:396356..398308 +

Link to JBrowse

Properties
Property NameValue
DescriptionPlasma-membrane choline transporter family protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:396356..398308 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007603Choline_transptr-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO19G01260 vs. NCBI_GenBank
Match: XP_005854837.1 (hypothetical protein NGA_2014000 [Nannochloropsis gaditana CCMP526] >EKU21517.1 hypothetical protein NGA_2014000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 465.7 bits (1197), Expect = 2.400e-127
Identity = 304/689 (44.12%), Postives = 393/689 (57.04%), Query Frame = 0
Query:    1 MAALDALEIFLVTIAGVVAIFSIVICCSAACLXXXGGAFTPLFCWAGWILACCNPWGGRPSSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLNETFSSGVVSGITLEGSAPPA--------VPPS-SSLP-SISYQYXXXXXXXXXXXXXXXXXXTTAPRDLWALLLFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIAAAAENGKHQQ---HQTAGQHTLLCLFLVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGL------------LGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVGVGFTRMFPYFFVGLPLPSLFIGVVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAWEGGR--------------MGEQTRLNAVQVMI 651
            MA LD LEIF +++ G++              XXX   FTP     GWILACC+ W  R SSY                                                        +L++   SG V G+ +EGSAPPA        +PPS +SLP      +                  T+ PRD   L+LF+LH CFLI LA+RLGLPSLG+WEHALVD +S T P  +S + +    +LL L+  L L+A++++  WL FML  S+ LI ST++ +++ + LL+ LSLL G  IG LLFA LA+ GLCLL E+ SR+ +SS+ LGTACRA+ E R LFG A L + L FL+ +IW+VAA GVY ++AA + +G H Q      AGQ  LL  FL+ SLYWG+ VCQN L+CTVVG +A+WWY P  + + V+ ALARA GPSLGS+C GS  V  IE+ R  LRG+G             G C C L               ++DY L CVEA WR FNRF FVFVGVWGY Y E  RLA++LFEA+GW+++LNDYLIGNVLFLG +++GG+  F+GV  TR+ P  F  LP  + F+ + GF+IG+GNCL+LVSV+SSAVDTVFVC+AA P VLQ NRP E+A L   ++  R               GE+  LN  QV I
Sbjct:    1 MADLDDLEIFSISLGGLLXXXXXXXXXXXXXXXXXXXXFTPXXXXXGWILACCS-W--RDSSY-RTIGDRNFTTITVIPPPPVAVAPYNNMNSRSYPVIGTVVEERSGPSQAYHSQAEMELSKGTLSGTVEGVVVEGSAPPAPLASLPQCLPPSDASLPHHAPSSHGHAAHVIMADLHATPPPQTSVPRDWGFLVLFLLHACFLITLALRLGLPSLGLWEHALVDDASRTAPLAHSPETVAVARNLLSLAAGLGLVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSLLSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYTTVAAES-HGNHLQSGRQYGAGQEALLGFFLLFSLYWGAGVCQNTLRCTVVGAVAAWWYVPGPARDSVSLALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLGGSQRGP--GCCPCCLXXXXXXXXXXXXXXXVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYGEAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGGVTAFLGVMTTRLLPEAFEALPASATFVALAGFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVFDQWRERGVVVDVGCSQDGRGERVPLNVAQVSI 682          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: EWM23647.1 (Choline transporter [Nannochloropsis gaditana])

HSP 1 Score: 460.3 bits (1183), Expect = 9.900e-126
Identity = 302/689 (43.83%), Postives = 391/689 (56.75%), Query Frame = 0
Query:    1 MAALDALEIFLVTIAGVVAIFSIVICCSAACLXXXGGAFTPLFCWAGWILACCNPWGGRPSSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLNETFSSGVVSGITLEGSAPPA--------VPPS-SSLP-SISYQYXXXXXXXXXXXXXXXXXXTTAPRDLWALLLFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIAAAAENGKHQQ---HQTAGQHTLLCLFLVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGL------------LGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVGVGFTRMFPYFFVGLPLPSLFIGVVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAWEGGR--------------MGEQTRLNAVQVMI 651
            MA L+ LEIF +++ G++              XXX   FTP     GWILACC+ W  R SSY                                                        +L++   SG V G+ +EGSAPPA        +PPS +SLP      +                  T+ PRD   L+LF+L  CFLI LA+RLGLPSLG+WEHALVD +S T P  +S + +    +LL L+  L L+A++++  WL FML  S+ LI ST++ +++ + LL+ LSLL G  IG LLFA LA+ GLCLL E+ SR+ +SS+ LGTACRA+ E R LFG A L + L FL+ +IW+VAA GVY ++AA + +G H Q      AGQ  LL  FL+ SLYWG+ VCQN L+CTVVG +A+WWY P  + + V+ ALARA GPSLGS+C GS  V  IE+ R  LRG+G             G C C L               ++DY L CVEA WR FNRF FVFVGVWGY Y E  RLA++LFEA+GW+++LNDYLIGNVLFLG +++GG   F+GV  TR+ P  F  LP  + F+ + GF+IG+GNCL+LVSV+SSAVDTVFVC+AA P VLQ NRP E+A L   ++  R               GE+  LN  QV I
Sbjct:    1 MADLEDLEIFSISLGGLLXXXXXXXXXXXXXXXXXXXXFTPXXXXXGWILACCS-W--RDSSY-RTIGDRNFTTITVIPPPPVAVAPYNNMNSRSYPVIGTVVEERSGPSQAYHSQAEMELSKGILSGTVEGVVVEGSAPPAPLASLPQCLPPSDASLPHHAPSSHGHAAHVIMADLHATPPPQTSVPRDWGFLVLFLLQACFLITLALRLGLPSLGLWEHALVDDASRTAPLAHSPETVAVARNLLCLAAGLGLVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSLLSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYTTVAAES-HGNHLQSGRQYGAGQEALLGFFLLFSLYWGASVCQNTLRCTVVGAVAAWWYVPGPARDSVSLALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLGGSERGP--GCCPCCLXXXXXXXXXXXXXXXVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYSEAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGGGTAFLGVMTTRLLPEAFEALPASATFVALAGFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVFDQWRERGVVVDVGCSQDGRGERVPLNVAQVSI 682          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: XP_008876794.1 (hypothetical protein H310_11800 [Aphanomyces invadans] >ETV94479.1 hypothetical protein H310_11800 [Aphanomyces invadans])

HSP 1 Score: 182.2 bits (461), Expect = 5.200e-42
Identity = 140/469 (29.85%), Postives = 238/469 (50.75%), Query Frame = 0
Query:  175 TTAPR--DLWALLLFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIAAAAEN-GKHQQHQTAGQHT---LLCLFLVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVGVGFTRMFPYFFVG-----LPLPSLFIGVVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            T AP+  D +  +LFV H+  +   A   GL  L   +H   +  S     ++ T ++  +  L+ LSV+ + L       W+  ++  +  +I   ++  V +    + +SL +   +G L F L A   +C +   Q+RI  +SA+L  AC AL +H+ +F +A  F+ +Q  + + WSV+A+GVY     A  N  K + H T    T   +   FL++S+YWG +V QNV+ CTV GT+A+WWY        VA +L R+   S GSIC GS  V  +++ R ++R +                     + CL +  L+C+E++   FN + + +VG++G+ +R  G+  M+LF+++GW  V+ND L    L +G+  VG +   VG+   +  P  +V           +  GV+GF+ GV   ++L +++ +A+ T+FVC+A DP   Q + P  +  L   W
Sbjct:   40 TPAPKCNDAFFAILFVGHLVAIAYFAFTSGLDYL---KHFEEEHPSQAAQKSF-TMVLGVSGSLIGLSVVFSAL-------WIQVLMACAENMIRFALWMNVGLMFGFAIMSLFVNPFVG-LFFLLGAAINICYINAVQNRIAFASAHLKLACVALSKHKSIFVLALFFILVQVAWLITWSVSAVGVYQLFRVADPNCEKEESHGTLCGGTGFNVAIFFLLVSVYWGQQVIQNVMTCTVAGTVATWWYNTHTD-RAVAGSLYRSLTSSFGSICFGSLIVAVLQALRTIVRTIKNKAAEDDN-------AALACVACLAECILNCIESLVEYFNMWAYTYVGIYGFDFRTAGKAVMQLFDSRGWTAVINDDLSSTALSIGAFGVGVLTCVVGLVVAKFAPADWVAGFGGDDTTRYVIFGVLGFIAGVSMAMILANLVITALHTIFVCFAEDPVSFQRSHPEHYNELILTW 488          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: GAY05198.1 (Hypothetical protein PINS_013014 [Pythium insidiosum])

HSP 1 Score: 182.2 bits (461), Expect = 5.200e-42
Identity = 142/473 (30.02%), Postives = 235/473 (49.68%), Query Frame = 0
Query:  180 DLWALLLFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTN-YSTQIITTTTHLLYLSVLLALLADLIALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIAAAAENGKHQ--------------QHQTAGQHTLLCLFLVL-SLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVGVGFTRMFP-YFFVGLPLPSL---FIGVVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            D +  LLF++H+  +   A   G+P++      +    +H    N  +T+     T +  L+V L  ++ +++  W+ F++ +++ +I   ++  V +  + +  S  +  P+  +LF  LA   +C ++  Q+RI  +SANL TAC A+ +H  +F VA   +  QF + L+WS++A+GVY     +  + K Q              QH   G    + LF +L S+YWG +V  NVL CT  G +A+WWY  + S      A+ R+   S GSIC GS  V  +++ R L   +                     + CL +  L+C+E +    N++ +V+VG+ GY +R  G+  M LF  +GW  V+ND L    L  G++ VG +   +G+      P  +FV L   S    F+G VGF+ G+G  ++L +V+ +A+ TVFVC+A DP  L  N P E   L   W
Sbjct:   42 DWFFALLFIVHVIAIAVFAGWKGVPAV------IAHVKTHKNADNTVTTEXQADFTMVFSLAVALMGISVVVSALWMRFLMAYAASMIRIALWFNVGLVVVFAITSFSVS-PLMAILFLGLAALNVCYIFAVQNRIAFASANLKTACAAVTDHMTIFLVALFMVVKQFAWLLLWSLSAIGVYQLFKESDPSCKDQPNALSRNGDDDLMPQHFCGGGPAGVALFFMLVSVYWGQQVIMNVLTCTTSGVVATWWYQAN-SKGATFGAMYRSLTTSFGSICFGSLIVAVLQALRTLASMLKEKAREDDN-------AALACVACLAECVLNCLEGIMEYINQWAYVYVGIXGYDFRTSGKAVMDLFANRGWTAVINDDLTSXALTFGAIGVGVMGCVIGLLMVHFSPEKWFVALGTKSAAYGFLGTVGFIAGMGMAMILANVVITALHTVFVCFAEDPIALSRNHPKEXETLVHGW 499          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: XP_009836062.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV74404.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 179.1 bits (453), Expect = 4.400e-41
Identity = 132/464 (28.45%), Postives = 235/464 (50.65%), Query Frame = 0
Query:  180 DLWALLLFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIAAAAENGKHQQHQTAGQ------HTLLCLFLVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVGVGFTRMFPY-FFVGLPLPS----LFIGVVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            D +  +LFV H+  +   A   GL  L  +E      ++H       T ++  +  L+  +V+ + L       W+  ++  +  +I   ++  V +    + +S+ +  P   L F L A   +C +   Q+RI  +SA+L  AC AL  H+ +F +A LF+F+Q  + + WS++A+GVY    +A  +   +Q ++ G+        +   FL++S+YWG +V QNV+ CTV GT+A+WWY        VA +L R+   S GSIC GS  V  +++ R ++R +                 G   + CL +  L+C+E++   FN + + +VG++G+ +R  G+  M+LF+++GW  V+ND L    L +G+  VG + G +G+   +  P  + VG         +  G +GF+ G    ++L +++ +A+ T+FVC+A DP   Q + P  +  L   W
Sbjct:   45 DAFFAILFVGHLVAIAYFAFTSGLDYLKHFESEHPSQAAH----KSFTMVLGVSGGLIGFAVVFSAL-------WIQVLMACAENMIRFALWMNVGMMFGFAIMSMFV-NPFMGLFFLLGAAINICYINAVQNRIAFASAHLKLACVALSNHKSIFALALLFIFVQVAWLVTWSLSAVGVYQLFRSA--DPSCEQEESRGELCGGAGFNVTIFFLLVSVYWGQQVIQNVMTCTVAGTVATWWYNARTE-SAVAGSLYRSLTSSFGSICFGSLIVAVLQALRTIVRTIKNKAAEDDN-------VGLACVACLAECILNCIESLVEYFNMWAYTYVGIYGFDFRSAGKAVMQLFDSRGWTAVINDDLSSTALSIGAFGVGVLTGVIGLVVAKFAPVDWTVGFGADDTTRYVIFGGLGFIAGFSMAMILANLVITALHTIFVCFAEDPVSFQRSHPEHYNELILTW 486          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: XP_009516302.1 (hypothetical protein PHYSODRAFT_552564 [Phytophthora sojae] >EGZ29027.1 hypothetical protein PHYSODRAFT_552564 [Phytophthora sojae])

HSP 1 Score: 177.2 bits (448), Expect = 1.700e-40
Identity = 141/463 (30.45%), Postives = 229/463 (49.46%), Query Frame = 0
Query:  186 LFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSF-LSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIAAA----------AENGKHQQHQTAGQHTLLCLF-LVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVGVGFTRMFPY-FFVGLPLPSLFIG---VVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            LF+ ++  L ALA   G+P+L   E    + S   +PT +S   +  T     +  +L +L  L++LAW+  ++ +++ +I   ++  V +  +L F ++         L F L+A   +  +Y  Q+RI  +SANL  AC AL +H  +F VA + +  Q  +  +W+VAALG++     A          A  G++      G    + LF +++S+YWG +V QN+L CT  G +A+WWY P      V  AL R+   S GSIC GS  V       A+L+ +                 G   L C+ +  +SC+  +   FN++ +V+VGV+GY +R  G+  M LF  +GW  V+ND L    L  G++ +G +   VG+   R  P  +F  L       G   ++GF++G    L+L  V+ +A+ T+FVC+A DP     N P E+  L + W
Sbjct:   49 LFLSNVVALAALAFWKGVPALK--EDMGRNRSDGRVPTGHS---VAGT-----MIAVLCVLGTLLSLAWIKLLMAYAASMIRVALWLNVFM--VLGFAVTTFSVNAWAALAFLLMAAINVWYIYAVQNRIGFASANLKAACTALKQHSSVFAVAFVLVLQQLAWMFLWAVAALGMHQIFLEADPDCDREIDLASRGRNHGGLCVGLPAYVALFYMLVSVYWGQQVLQNILTCTTAGVVATWWYQPHAQKATVG-ALYRSVTTSFGSICFGSLIV-------AVLQALKTMANMARRRANEENNNGLACLACMAECIVSCLADIMEYFNQWAYVYVGVYGYPFRTSGKAVMDLFNNRGWTAVINDDLTSGALSFGALGIGIVTCCVGLLMVRFSPVEWFTALGSRMSVYGTMALIGFMVGFTMALILAHVIIAALHTIFVCFAEDPVAFNRNHPKEYDDLVSGW 491          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: CCI50081.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 176.0 bits (445), Expect = 3.700e-40
Identity = 137/471 (29.09%), Postives = 230/471 (48.83%), Query Frame = 0
Query:  180 DLWALLLFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALA--WLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYAS-----------IAAAAENGKHQQHQTAGQHTLLCLF-LVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGI---VGFVGVGFTRMFPYFFVGLPLPSL-FIGVVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            DLWA +LF+  +  +   A+  GLP++       ++ S H    NY  Q         +  +LL +    +AL+  W+  ++ ++  +I  T++  V +  +   L      P+  L+F +LA   +C +Y  Q+RI  +SANL  AC ++L+   +F VA   +  Q  +  +WS +A+G+Y             +    +N         G  T   LF +++SLYWG +V QN+L CTV G +ASWWY        V  AL R+   + GSIC+GS FV  +++ +A+ R +                     +GC+ +  L C+E++    N + +++VG++G  +R   +  M LF  +GW  V+ND L  + L  G++ VG +   +GF+ V F+ +  + F G        IG   F+ G    + + +V+ +A+ TVFVC+A DP  LQ N P E+  L + W
Sbjct:   22 DLWAAILFLAQVIVIGFFAVWKGLPAV----LDQMENSQHG-HKNYDFQ--------NFFILLLGIFGLTVALSGFWMKLLMSYAESMIRVTLWCNVGLVIVFG-LGTFPVSPVSSLIFLMLAAVNICYIYAVQNRIGFASANLKCACTSILKFSGVFWVALALVIQQIFWLTVWSTSAIGIYGMFKESHPNCQDFLKGNTKNDIAASGDCGGIGTGFILFAMLVSLYWGQQVLQNILTCTVAGVVASWWYRSGEDGITVG-ALYRSVTTAFGSICLGSLFVSILQAMQAMARML-------REKAQEEDNAALACVGCIAECILGCLESIMEYLNMWAYIYVGIYGRDFRTSAKAVMDLFRGRGWTAVINDDLASSALTFGAIGVGCVACSIGFIAVYFSPVSWFDFFGTKKAGYGVIGAGAFIAGTSVSMTMANVVLAALHTVFVCFAEDPIALQHNHPREYEDLISGW 470          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: CCI50082.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 176.0 bits (445), Expect = 3.700e-40
Identity = 137/471 (29.09%), Postives = 230/471 (48.83%), Query Frame = 0
Query:  180 DLWALLLFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALA--WLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYAS-----------IAAAAENGKHQQHQTAGQHTLLCLF-LVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGI---VGFVGVGFTRMFPYFFVGLPLPSL-FIGVVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            DLWA +LF+  +  +   A+  GLP++       ++ S H    NY  Q         +  +LL +    +AL+  W+  ++ ++  +I  T++  V +  +   L      P+  L+F +LA   +C +Y  Q+RI  +SANL  AC ++L+   +F VA   +  Q  +  +WS +A+G+Y             +    +N         G  T   LF +++SLYWG +V QN+L CTV G +ASWWY        V  AL R+   + GSIC+GS FV  +++ +A+ R +                     +GC+ +  L C+E++    N + +++VG++G  +R   +  M LF  +GW  V+ND L  + L  G++ VG +   +GF+ V F+ +  + F G        IG   F+ G    + + +V+ +A+ TVFVC+A DP  LQ N P E+  L + W
Sbjct:   37 DLWAAILFLAQVIVIGFFAVWKGLPAV----LDQMENSQHG-HKNYDFQ--------NFFILLLGIFGLTVALSGFWMKLLMSYAESMIRVTLWCNVGLVIVFG-LGTFPVSPVSSLIFLMLAAVNICYIYAVQNRIGFASANLKCACTSILKFSGVFWVALALVIQQIFWLTVWSTSAIGIYGMFKESHPNCQDFLKGNTKNDIAASGDCGGIGTGFILFAMLVSLYWGQQVLQNILTCTVAGVVASWWYRSGEDGITVG-ALYRSVTTAFGSICLGSLFVSILQAMQAMARML-------REKAQEEDNAALACVGCIAECILGCLESIMEYLNMWAYIYVGIYGRDFRTSAKAVMDLFRGRGWTAVINDDLASSALTFGAIGVGCVACSIGFIAVYFSPVSWFDFFGTKKAGYGVIGAGAFIAGTSVSMTMANVVLAALHTVFVCFAEDPIALQHNHPREYEDLISGW 485          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: CCI50083.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 176.0 bits (445), Expect = 3.700e-40
Identity = 137/471 (29.09%), Postives = 230/471 (48.83%), Query Frame = 0
Query:  180 DLWALLLFVLHMCFLIALAIRLGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLIALA--WLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYAS-----------IAAAAENGKHQQHQTAGQHTLLCLF-LVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGI---VGFVGVGFTRMFPYFFVGLPLPSL-FIGVVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            DLWA +LF+  +  +   A+  GLP++       ++ S H    NY  Q         +  +LL +    +AL+  W+  ++ ++  +I  T++  V +  +   L      P+  L+F +LA   +C +Y  Q+RI  +SANL  AC ++L+   +F VA   +  Q  +  +WS +A+G+Y             +    +N         G  T   LF +++SLYWG +V QN+L CTV G +ASWWY        V  AL R+   + GSIC+GS FV  +++ +A+ R +                     +GC+ +  L C+E++    N + +++VG++G  +R   +  M LF  +GW  V+ND L  + L  G++ VG +   +GF+ V F+ +  + F G        IG   F+ G    + + +V+ +A+ TVFVC+A DP  LQ N P E+  L + W
Sbjct:   27 DLWAAILFLAQVIVIGFFAVWKGLPAV----LDQMENSQHG-HKNYDFQ--------NFFILLLGIFGLTVALSGFWMKLLMSYAESMIRVTLWCNVGLVIVFG-LGTFPVSPVSSLIFLMLAAVNICYIYAVQNRIGFASANLKCACTSILKFSGVFWVALALVIQQIFWLTVWSTSAIGIYGMFKESHPNCQDFLKGNTKNDIAASGDCGGIGTGFILFAMLVSLYWGQQVLQNILTCTVAGVVASWWYRSGEDGITVG-ALYRSVTTAFGSICLGSLFVSILQAMQAMARML-------REKAQEEDNAALACVGCIAECILGCLESIMEYLNMWAYIYVGIYGRDFRTSAKAVMDLFRGRGWTAVINDDLASSALTFGAIGVGCVACSIGFIAVYFSPVSWFDFFGTKKAGYGVIGAGAFIAGTSVSMTMANVVLAALHTVFVCFAEDPIALQHNHPREYEDLISGW 475          
BLAST of NO19G01260 vs. NCBI_GenBank
Match: XP_008917101.1 (hypothetical protein PPTG_20185 [Phytophthora parasitica INRA-310] >ETM97602.1 hypothetical protein PPTG_20185 [Phytophthora parasitica INRA-310])

HSP 1 Score: 173.7 bits (439), Expect = 1.900e-39
Identity = 125/407 (30.71%), Postives = 201/407 (49.39%), Query Frame = 0
Query:  242 LLALLADLIALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSF-LSLLLGRPIGFLLFALLALTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFALIWSVAALGVYASIAAA----------AENGKHQQHQTAGQHTLLCLF-LVLSLYWGSEVCQNVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGIESFRALLRGMGXXXXXXXXXXXXRGICGCGLLGCLIDYALSCVEAMWRTFNRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVMVGGIVGFVGVGFTRMFPY-FFVGLPLPSLFIG---VVGFVIGVGNCLVLVSVLSSAVDTVFVCYAADPGVLQVNRPVEFACLEAAW 633
            LL ++  +++LAW+  ++ ++S +I   ++    V  +L+F +S         L F  +A   +  +Y  Q+RI  +SANL  AC  L +H  +F VA + +  Q ++  +W VA+LG++     A          A  G++      G      LF +++S+YWG +V QN+L CT  G +A+WWY P+     V  AL R+   S GSIC GS  V  +++ R +                     G   L C+ +  LSC+  +    N + +V+VGV+GY +R  G+  M LF  +GW  V+ND L  + L  G+  VG +   VG+   R  P  +F  L       G   ++GF++G+   L+L  V+ +A+ T+FVC+A DP     N P E+  L A W
Sbjct:   23 LLCVVGTVLSLAWIKLLMSYASSMIRVALWLN--VGMVLAFAVSTFSVNVWAALFFLFMAAINVWYIYAVQNRIGFASANLKAACAGLKQHSAVFVVAFVLVLQQLVWMFLWGVASLGMHKLFVEADPNCDREIDLASRGRNHGGLCVGLPAYAALFYMLVSVYWGQQVLQNILTCTTAGVVATWWYQPNAQKATVG-ALYRSVTTSFGSICFGSLIVAVLQALRTM-------ADMAKRRASEENNGGLACLACMAECILSCLANIVEYMNHWAYVYVGVYGYPFRTSGKAVMDLFNNRGWTAVINDDLTSSALSFGAFGVGVVTCCVGLLMVRFSPVEWFTALGSRMGVYGTMALIGFMVGLSMALILAHVIIAALHTIFVCFAEDPVAFNRNHPKEYEELVAGW 419          
The following BLAST results are available for this feature:
BLAST of NO19G01260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854837.12.400e-12744.12hypothetical protein NGA_2014000 [Nannochloropsis ... [more]
EWM23647.19.900e-12643.83Choline transporter [Nannochloropsis gaditana][more]
XP_008876794.15.200e-4229.85hypothetical protein H310_11800 [Aphanomyces invad... [more]
GAY05198.15.200e-4230.02Hypothetical protein PINS_013014 [Pythium insidios... [more]
XP_009836062.14.400e-4128.45hypothetical protein, variant [Aphanomyces astaci]... [more]
XP_009516302.11.700e-4030.45hypothetical protein PHYSODRAFT_552564 [Phytophtho... [more]
CCI50081.13.700e-4029.09unnamed protein product [Albugo candida][more]
CCI50082.13.700e-4029.09unnamed protein product [Albugo candida][more]
CCI50083.13.700e-4029.09unnamed protein product [Albugo candida][more]
XP_008917101.11.900e-3930.71hypothetical protein PPTG_20185 [Phytophthora para... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL013nonsL013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR037ngnoR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G01260.1NO19G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G01260.1NO19G01260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G01260 ID=NO19G01260|Name=NO19G01260|organism=Nannochloropsis oceanica|type=gene|length=1953bp
ATGGCAGCCTTGGACGCCTTGGAGATTTTTCTTGTAACGATCGCAGGCGT
TGTCGCTATATTTAGTATCGTCATCTGCTGTTCAGCCGCATGTCTGGCCT
GCTGCGGGGGTGCCTTTACACCCCTCTTTTGCTGGGCCGGGTGGATCCTA
GCCTGCTGCAACCCCTGGGGCGGACGCCCGTCTTCTTACCACGCAATGGG
TGGGCACGGGGGTGGTACTTTTACAACCGTCACCATCATCCCACCCCCAC
CCAATGTTGTAATTAGCAGCGACTTGCCACAGGCTTCGGCGCCGCCGGCA
ATGGCTGTTGCCGAGGCCATGCCGTGGCAGCAGCAGCACCACCACCACCA
CCTGAAACAACTCAATGAAACATTCTCCTCTGGAGTGGTGAGTGGGATCA
CCCTCGAAGGCAGTGCTCCACCTGCTGTTCCTCCCTCTTCCTCCCTCCCC
TCTATCTCTTACCAATATTCCACAAGCACAACCAGCAACATGACCACCAT
CAACGTCCCTCCCCCCCCACAAACCACTGCTCCACGCGACCTCTGGGCCC
TCCTCCTCTTCGTACTCCACATGTGCTTCCTCATCGCCCTCGCCATTCGC
CTCGGCCTTCCTTCTCTCGGTGTTTGGGAGCATGCCCTTGTCGATACTAG
CAGCCACACCATTCCCACGAACTACTCCACCCAAATAATCACCACCACCA
CCCACCTCCTCTATCTTTCCGTCCTCCTTGCCCTCCTCGCCGATCTTATA
GCCCTCGCCTGGCTCTATTTTATGCTACAATGGTCCTCCCTTCTAATCCA
CAGCACAATCTACACCACCGTCCTCGTCTCTTCCCTGCTCTCCTTCCTCT
CCCTCCTGCTAGGACGCCCCATCGGATTCCTTCTCTTCGCTTTGCTAGCC
CTCACGGGGCTCTGCCTCCTCTACGAGGAACAATCGCGTATCTTCCTCTC
CTCCGCTAATTTAGGTACTGCCTGTCGTGCCTTGCTCGAACATCGAAAAC
TATTCGGTGTCGCTTGTCTGTTCCTCTTCCTTCAATTTCTCTTTGCATTA
ATCTGGTCGGTGGCGGCCTTGGGTGTATATGCCTCCATCGCTGCTGCCGC
TGAAAATGGCAAGCATCAGCAGCATCAAACGGCAGGACAGCATACATTAT
TATGTCTTTTCCTCGTCCTTTCTCTGTACTGGGGGTCGGAGGTGTGTCAG
AATGTCTTAAAATGCACGGTGGTTGGCACGATTGCCTCCTGGTGGTATTT
TCCCGATGTTTCCTTTGAGCCTGTTGCGCCAGCGTTAGCGCGAGCAGCAG
GGCCGAGCTTGGGTAGTATTTGTGTGGGCTCTTTCTTTGTAGGGGGTATT
GAGAGTTTCAGAGCGCTGCTACGTGGGATGGGGGGGGGAAGGGGGGGAGG
AACATTATGTTGTTGTTGTCGAGGGATTTGTGGGTGTGGATTGCTTGGGT
GCCTGATAGATTATGCGCTATCGTGCGTGGAAGCGATGTGGCGGACATTT
AATCGGTTTACCTTTGTCTTTGTGGGGGTGTGGGGGTATGGGTACCGGGA
GGGTGGGCGGTTGGCCATGAAGCTGTTTGAGGCCAAGGGGTGGGATTTGG
TTTTGAATGATTACTTGATAGGAAATGTTTTATTTTTGGGGTCGGTCATG
GTAGGGGGTATTGTGGGGTTTGTGGGAGTGGGGTTTACACGTATGTTTCC
GTATTTCTTCGTCGGGCTACCGTTGCCTTCTTTGTTTATTGGCGTGGTTG
GGTTTGTGATAGGTGTAGGGAACTGCTTGGTGTTGGTGAGTGTTTTATCG
TCGGCGGTGGACACGGTATTCGTCTGTTATGCTGCCGATCCGGGCGTGTT
GCAGGTAAACCGGCCGGTAGAATTTGCATGTTTGGAGGCTGCGTGGGAGG
GAGGGAGGATGGGGGAGCAGACACGGTTGAATGCAGTACAAGTGATGATT
TGA
back to top

protein sequence of NO19G01260.1

>NO19G01260.1-protein ID=NO19G01260.1-protein|Name=NO19G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp
MAALDALEIFLVTIAGVVAIFSIVICCSAACLACCGGAFTPLFCWAGWIL
ACCNPWGGRPSSYHAMGGHGGGTFTTVTIIPPPPNVVISSDLPQASAPPA
MAVAEAMPWQQQHHHHHLKQLNETFSSGVVSGITLEGSAPPAVPPSSSLP
SISYQYSTSTTSNMTTINVPPPPQTTAPRDLWALLLFVLHMCFLIALAIR
LGLPSLGVWEHALVDTSSHTIPTNYSTQIITTTTHLLYLSVLLALLADLI
ALAWLYFMLQWSSLLIHSTIYTTVLVSSLLSFLSLLLGRPIGFLLFALLA
LTGLCLLYEEQSRIFLSSANLGTACRALLEHRKLFGVACLFLFLQFLFAL
IWSVAALGVYASIAAAAENGKHQQHQTAGQHTLLCLFLVLSLYWGSEVCQ
NVLKCTVVGTIASWWYFPDVSFEPVAPALARAAGPSLGSICVGSFFVGGI
ESFRALLRGMGGGRGGGTLCCCCRGICGCGLLGCLIDYALSCVEAMWRTF
NRFTFVFVGVWGYGYREGGRLAMKLFEAKGWDLVLNDYLIGNVLFLGSVM
VGGIVGFVGVGFTRMFPYFFVGLPLPSLFIGVVGFVIGVGNCLVLVSVLS
SAVDTVFVCYAADPGVLQVNRPVEFACLEAAWEGGRMGEQTRLNAVQVMI
*
back to top
Synonyms
Publications