NO19G00950, NO19G00950 (gene) Nannochloropsis oceanica

Overview
NameNO19G00950
Unique NameNO19G00950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2308
Alignment locationchr19:320479..322786 +

Link to JBrowse

Properties
Property NameValue
DescriptionWD40-repeat-containing domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:320479..322786 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO19G00950 vs. NCBI_GenBank
Match: EWM24356.1 (WD40-repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 141.7 bits (356), Expect = 7.200e-30
Identity = 144/503 (28.63%), Postives = 210/503 (41.75%), Query Frame = 0 
Query:   31 LSHLVPFPAFACQWVGPDLLLVAGGGGATKTGVPNGVIIYKLSSPNSIDVLTLHRERYTDDDLPYYASAAPALGLLLVALGQRLELWRLADLSFLCILLDVEREGG-----------KGGGKDGGGEVNFVAAFCGDGKHLAVAGGREGGEGVGEGGVSVFKLRLSRA----GTERVSVEGSELVSHRRAKGGRKGGRVRELGWHPNGYHLVGA-EEGSEGGVW--------RIWALTPQFGLEEETILSPEEVEEXXXXXXXXXXXXXXXXXXXXXRYVKACRSAGFTTDGTRLVTVHYQKRGPVRAGGXXXXXXVLTLQQQKQLLAEEERKVDKRPWLTVWGVE--EGEDK------RLKLKRGAAIPL-GVSPVLCMGLLTERREGGKEGGGKGGEMLAVCGDAEGRTVSIGVGREGGKVGGRGSWSLVSDTQHNMHNFGVTAISIRP--PLXXXXXXXXXXXXXXXXVASTSADKTVRLQWRSSPQR-----GWVASSF 494
            LSH +PFPAFA  WV    +++ GGGGA+KTGVPNGV++Y +     ++ L   R   T D+LPY+A A P+L LL VA+G R+EL RL ++  L  +L++  +             +G G  G   V+       D  ++ +A       G  +G + + K+  S      G +    EG   VS             R++ +HP+G  ++GA E+GS    W           A  P F L   +    E   E                          CR   F+ DG  L TVHY +RGP                          +  DKRP LT WG+E   GE++      R+ ++   ++ L GV P++C+ L             +G   + V GD  GRT+               SW      +  MHNFGVT++S  P  PL                +ASTS DKT+RLQ+  + ++     GW+  SF
Sbjct:    5 LSHTLPFPAFAVDWVDAHNIVITGGGGASKTGVPNGVLLYLVR--GGVERLVQRRFYQTGDELPYFAKALPSLDLLAVAIGNRVELLRLHNIMPLTRVLELAPDPNVMDPTMVIAFYQGTGTTG---VDAPDNMPQDATNILMA------VGAHDGHIRLLKIAPSETQQTEGVKSHESEGPPTVSQLGITPTATEKPYRDIAFHPSGCFVLGACEDGSWRAFWVCRGERQDHQGACPPAFTLVATSKGGMEGSTESAAGIVAKDQKQGIFY---------TCRCGKFSEDGRFLFTVHYVRRGP--------------------------KNTDKRPVLTKWGLELRRGEEQGGRGEARVSVRVVRSVCLAGVDPIMCIDL-------------RG--PVGVAGDCSGRTIIFQTRNL--------SWK----AREKMHNFGVTSLSFYPAWPL-AGPPHASTVREEDVRIASTSGDKTLRLQYLQASRQDHKRMGWIRWSF 433
The following BLAST results are available for this feature:
BLAST of NO19G00950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24356.17.200e-3028.63WD40-repeat-containing domain protein [Nannochloro... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00950.1NO19G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00950.1NO19G00950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00950 ID=NO19G00950|Name=NO19G00950|organism=Nannochloropsis oceanica|type=gene|length=2308bp
ATGTCTGGTGGAGCGACACAAGAAGAAGCGGCGGGAGCAAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAGTCTCTCTCCCACC
TCGTGCCCTTTCCAGCATTCGCCTGTCAATGGGTAGGCCCTGATTTGCTG
CTCGTGGCAGGAGGAGGTGGGGCCACCAAGACAGGCGTACCGAATGGCGT
GATCATCTACAAGgtgcgtgcgaaggtgcatgtgcgccgtagcgggttcg
tattgaacggcatgcaagcctgttgggtctcctcctcctccttgccctcg
ttccttcatcgctttgacttatcgctccatccatctctctctttcatgct
tcattcgctgtcacacccagCTCTCCAGCCCCAACAGCATCGACGTCCTT
ACTCTGCACCGGGAGAGATACACAGACGACGACCTCCCTTATTATGCTTC
TGCTGCCCCTGCGCTCGGCCTCCTCCTCGTCGCCCTGGGACAGCGCCTTG
AGCTTTGGCGCTTGGCTGACCTGAGCTTTTTATGCATTTTACTGGATGTT
GAAAGGGAGGGAGGGAAGGGGGGAGGGAAGGATGGAGGTGGGGAAGTGAA
CTTCGTCGCCGCTTTTTGTGGAGATGGGAAGCACCTGGCAGTGGCCGGTG
GAAGGGAAGGAGGGGAGGGAGTGGGGGAAGGAGGGGTGAGTGTCTTTAAG
CTCCGGCTGTCGAGGGCAGGCACAGAGAGAGTGAGTGTGGAGGGGTCCGA
GTTGGTGAGCCATCGAAGGGCCAAGGGAGGGAGGAAGGGAGGGAGGGTGA
GGGAGTTAGGGTGGCATCCGAATGGGTATCACCTTGTAGGGGCGGAGGAA
GGGAGTGAGGGAGGGGTGTGGAGGATCTGGGCCTTGACTCCTCAATTTGG
CTTGGAGGAAGAGACGATCTTGTCACCAGAGGAGGTAGAGGAGGAGGGGG
AGGAGGGGGAGGGGGAGAGGCAGACGACAAAGAGGGAGGGAGGGAGGGAG
GGAGGGAGGTACGTGAAAGCTTGTCGGAGTGCAGGTTTTACGACGGATGG
AACGAGGCTTGTGACGGTTCATTATCAGAAGCGAGGCCCTGTGAGAGCCG
GGGGAGGGAGGGAAGGAGGGAGGGTGTTGACGTTGCAGCAGCAGAAGCAG
CTGCTGGCGGAGGAGGAGAGGAAGGTGGACAAGAGGCCGTGGTTGACGGT
GTGGGGGGTGGAGGAGGGGGAGGACAAGCGTCTGAAGCTAAAGAGAGGAG
CGGCAATACCCCTCGGCGTGTCGCCTGTTTTGTGCATGGGACTTTTGACG
GAAAGAAGGGAGGGAGGGAAGGAGGGAGGGGGAAAGGGGGGGGAGATGCT
GGCGGTGTGTGGGGACGCAGAGGGAAGGACGGTGTCGATAGGGGTGGGAA
GGGAGGGAGGGAAGGTGGGAGGGAGGGGGAGTTGGTCCCTCGTGTCAGAC
ACGCAGCACAACATGCACAATTTCGGGGTGACTGCCATCAGCATCCGCCC
TCCCCTCCCTCCTTCCAGTCCTCCCTCCCCTTCCCCTTTTCCCTCCGCCT
ACCTTGTCGCTTCCACGTCTGCTGATAAGACTGTGAGGCTCCAATGGCGG
TCTTCACCGCAACGAGGGTGGGTTGCCTCATCCTTTGTCTTCGTCTCCTC
CCGGCTGGGAGGACTAAGACAGCTGGCCTTCTTCCTCCTCGCCCTCCTCC
TCATTCTCGAGCGGTACGGGCCCTACAGCGACCCTTTCGGTGACCTCTGC
CCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCCTCATC
CTCCGGAAAGGGTCGGTGGGTAGGATGGTTATGTTGGGGTGTGGGTGTGT
GGAACTACCTGTTGTTTATTATGGTGGGATGTAAGGCGGAGAAATGCGTG
GCTGCAGGGCAGGCTGTCTCTCGGTGGGTGGAGGGAATGCTGGAACCTGG
CCATTAGGGGGGGAGGGAGGAAGGGAGAGAGGGGGGAAAGGAGGGCGTGG
CTGCAAGGCAGGCTGTTTCTCGGTGGGTGGAGGATACGCATTAGGGGAAA
GGAAGGAGGAAAGGAGGAGGGGAAGGAGGAAAGGAAGGAAAGGGGGAGGA
GAGAAGAAGGGAGGGGAAGGGCTGGACGATAGGAGGGTGCATGTACCATA
AAGTTTTTCATTAATTCATGCCGTCTCCTGTAGTGCCATAAGGTAGACAT
ATTCACTGTCAAAGGAAGGATGGAGGAAGGGAGGGAAGGATGGAGATAGT
GAGAGAGGGAGGGAGGGGAGGAGGGCAAGTAACAGCTGGTACTCAAAGAC
GACAGGGG
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protein sequence of NO19G00950.1

>NO19G00950.1-protein ID=NO19G00950.1-protein|Name=NO19G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp
MSGGATQEEAAGASSSSSSSSSSSSSSSQSLSHLVPFPAFACQWVGPDLL
LVAGGGGATKTGVPNGVIIYKLSSPNSIDVLTLHRERYTDDDLPYYASAA
PALGLLLVALGQRLELWRLADLSFLCILLDVEREGGKGGGKDGGGEVNFV
AAFCGDGKHLAVAGGREGGEGVGEGGVSVFKLRLSRAGTERVSVEGSELV
SHRRAKGGRKGGRVRELGWHPNGYHLVGAEEGSEGGVWRIWALTPQFGLE
EETILSPEEVEEEGEEGEGERQTTKREGGREGGRYVKACRSAGFTTDGTR
LVTVHYQKRGPVRAGGGREGGRVLTLQQQKQLLAEEERKVDKRPWLTVWG
VEEGEDKRLKLKRGAAIPLGVSPVLCMGLLTERREGGKEGGGKGGEMLAV
CGDAEGRTVSIGVGREGGKVGGRGSWSLVSDTQHNMHNFGVTAISIRPPL
PPSSPPSPSPFPSAYLVASTSADKTVRLQWRSSPQRGWVASSFVFVSSRL
GGLRQLAFFLLALLLILERYGPYSDPFGDLCPSSSSSSSSSSSSSSSSSG
KGRWVGWLCWGVGVWNYLLFIMVGCKAEKCVAAGQAVSRWVEGMLEPGH*
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Synonyms
Publications