NO19G00910, NO19G00910 (gene) Nannochloropsis oceanica

Overview
NameNO19G00910
Unique NameNO19G00910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2491
Alignment locationchr19:307536..310026 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:307536..310026 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO19G00910 vs. NCBI_GenBank
Match: EWM23601.1 (hypothetical protein Naga_100139g8 [Nannochloropsis gaditana])

HSP 1 Score: 129.0 bits (323), Expect = 2.700e-26
Identity = 97/287 (33.80%), Postives = 138/287 (48.08%), Query Frame = 0 
Query:   21 SHGGSFHYLNAQKRILREYAKNHLGLGVRWRSSLRGVKSYRGVRLDVTPSSQWTQEELDTLYAKWGLDRPSPEELKAKTCMTVLTR-DKVXXXXXXXXXXXXXXXXXXXAHPRYTQPRRVAAQRNRLVQAEDMPLDEEEYEEHSHATDVASNMSSPSHYSGATRDRNLSLSSSSLSSLQGGPATGAVGSRNRNIVYYGESDTDSISEDGDDAHLQGPSNGGGGPARRANTATKASVPSATGAGRVTSTAKSTGSACCMQGAQDHNRVVMMDELVGDFGAELLPFLGF 307
            S  G FHYLNAQKR+LR+YA+  LGLGVRWRSSL+G+KS RG+RL  TPSSQWTQ+ELD LY KW LDRP+ EEL+   C+  LT+ DKV                        +   R      +      + ++ ++YE       V S ++      G +          S S+L   P       R    V+  ++D +  SEDGD    +   + G        + T    P  +   +  ++  ST   C  Q       V+++DE++ +FGA+LLP+L F
Sbjct:   55 SQAGCFHYLNAQKRLLRDYARTTLGLGVRWRSSLQGLKSARGIRLATTPSSQWTQDELDCLYRKWDLDRPNSEELRVNACIRRLTQHDKVKQESSLDTRPGFPWNSRSQIPSLASPSLRSINLDEKKNSCSLLDMERDQYESAGPVQRVFSPIACSEPLHGKSEPSKRRPHLVSRSTLDEEPM--CKHRRGNMPVFAVDTDVEFTSEDGDGRDYR---HEGRMDDNNCASDTPTDTPMGSIGIQENTSTMSTLLPCAGQVHNFDESVMLLDEILEEFGADLLPYLEF 336
The following BLAST results are available for this feature:
BLAST of NO19G00910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23601.12.700e-2633.80hypothetical protein Naga_100139g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004423NSK004423Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00910.1NO19G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598918gene_7483Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100139g8gene6859Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00910.1NO19G00910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00910 ID=NO19G00910|Name=NO19G00910|organism=Nannochloropsis oceanica|type=gene|length=2491bp
GGTCCTGCTCAGGACTTCAGCCCCACGACAACCAATGCGTTGTGAACGGG
CTGCTCGGCTTATCACCGCGAACAATTTTCGGGCTCTGAATGTCGATAGC
GCGCAACAATCAACGCGTGCTACCCACCAGTGAAGTACACTAACTTTCCT
CCTCCACGCTATCTGAAGCTAGTTTATGTGCTTTGCATGGATGAATACGT
ACGTTTCTGCTGTCACCCTTCGAGTGAGGGCTCGTACAGGGAAAACCGTT
GGGCTTCTTGGTGCGTCGGATTGGGGAGTCGGTTTCGAGTAGTGAGGAGC
AGAGTGCCTCTCGTGCCAATTATTCGTTCTCTTGCTCGTTTGGGCGCATC
TCCCGCGCGTGTGCAAAGCTGCATCCTTCTGTTCTCGTGTATGCTTTGAA
GTGAACACATTTCCTGCATCTCTTAATCGCTTGCTGTACATAGCCATGCA
ATCCACCCAGAAGCTGCGGATGACAGCAACAACCGACGGTGCGGTGTTGA
TGTTTTTGCCCCCACAATCCCATAGGCCGTTCACTCTCACACCGTGCAAT
TGCTAGTGCTTTATGTCCCTCTTGCCTTTTAACTTCACAGAATATGCCCA
CGCTGAGTGTAGCGCCACGCGCGGATCGCCCTTGCCTGTGACCGTGACTC
AAACAATCAAGGCTCACTCGGAGGCGAAACGAGAAAAGCCCACGAAGGAA
GTCGCTCCTTCTAGGGCAAAGGAGACGCACGCAGAAGCGACGTCGGAAAT
CTCAAGATGCACACTTAGTTGCTCGACGATTTATCCAACACGATATCCCT
TGCGCTCTCTCTTATCCACACTTTTCATTTATCACAGGACCCATGACAAC
AGCTGGCCGCAGGATATAGGCGCATCGACCCCTGCACTAAGTACGCCTGC
TCGCAATTTCGAAGAGCATGCTCTCAAGAAAATTTAGATGCCGTGACGTT
CCTAGGCTCGCGGAGTTCCTGCTCACCAGAACGTTTGACATAGTAGAGAT
ATGCTTCCCTCCGGCTTTCTCGTCCATCCCAGGTCCTTCTAGACAATGTC
CAGTACCCTGGATGTGCTCACTTGAAGGCAGAGTGGAATTGCAAGTGCGC
CTTCTCTGACGCATATCAGCGATCGGATGCGGCCCAAGTTGAGGGGCCTC
CCGCCTCACGCAACCTTTTTCCCGAGCAAGCCGTACTGCAGCATTAAAAT
TACAATGTACCGGTCAGCCTTCCTCTCAACTTCTCCCATATACCCACCCA
TACCTCTCAATAGGAAAAACTTGACGTTGCGCGCTCGGGCATTCCGAGCA
TGGGCAGTAGCACGCGACCCAGTGGGGGAGCAGCAGGAGCACCACCAGGA
GGCGGCGTTAGCCACGGGGGCTCTTTCCACTACCTCAATGCACAAAAGCG
CATCCTGCGCGAGTATGCTAAAAATCATTTGGGATTGGGCGTCCGTTGGC
GGTCGAGCTTGCGCGGGGTCAAGAGCTATCGGGGCGTGCGCTTGGACGTG
ACTCCGTCTAGCCAGTGGACCCAGGAGGAGCTGGATACCCTCTACGCGAA
ATGGGGCTTGGACCGACCGTCCCCTGAAGAGCTCAAAGCCAAGACCTGCA
TGACCGTGCTGACTCGGGACAAGGTGCCCCCACCCCCACAACCACAAGAT
GAAGAAGAGGAAGACGGGCCTTTTCCACCGCCTGCACATCCACGGTACAC
CCAGCCGCGACGCGTGGCGGCCCAACGCAACCGTCTTGTGCAGGCTGAGG
ACATGCCATTGGACGAGGAGGAATACGAGGAGCACTCCCACGCCACCGAC
GTGGCCTCGAACATGTCGTCGCCGTCCCATTATTCGGGTGCGACGCGCGA
TCGGAACTTGAGTCTGTCTTCCTCTTCGCTATCTTCCCTCCAAGGTGGAC
CTGCCACGGGGGCTGTGGGCAGCCGCAACCGCAACATTGTGTACTACGGT
GAGAGCGATACTGACAGCATCTCAGAGGACGGTGACGATGCGCATCTCCA
GGGGCCTTCCAACGgtatgtttaaattcgtgtggatccctctttttaaat
gtacggcgcctgctcgaggcggccctgtttgttatgtttagtaggatttc
ttataatttgcaattctaacgccggcacaaacataatctagacttaactc
attgaccccacattctctctcattctttgcccattgtcctaacagGCGGG
GGTGGCCCAGCCCGTCGTGCGAACACCGCAACCAAGGCCTCTGTCCCTTC
TGCCACGGGCGCTGGGAGGGTCACGTCTACCGCCAAGAGCACGGGCAGCG
CGTGCTGCATGCAGGGAGCGCAGGACCACAATAGAGTGGTGATGATGGAT
GAATTGGTGGGAGATTTTGGCGCGGAGCTCCTGCCCTTCTTGGGCTTCGA
GATGGGACCCAATATCCTTGGTGTGGAAGGGGAAGAACAGGCATTGCCAA
CGCTTTTGGAGGGGGAGCAGATGGATGTGGACAAGATGTGA
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protein sequence of NO19G00910.1

>NO19G00910.1-protein ID=NO19G00910.1-protein|Name=NO19G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MGSSTRPSGGAAGAPPGGGVSHGGSFHYLNAQKRILREYAKNHLGLGVRW
RSSLRGVKSYRGVRLDVTPSSQWTQEELDTLYAKWGLDRPSPEELKAKTC
MTVLTRDKVPPPPQPQDEEEEDGPFPPPAHPRYTQPRRVAAQRNRLVQAE
DMPLDEEEYEEHSHATDVASNMSSPSHYSGATRDRNLSLSSSSLSSLQGG
PATGAVGSRNRNIVYYGESDTDSISEDGDDAHLQGPSNGGGGPARRANTA
TKASVPSATGAGRVTSTAKSTGSACCMQGAQDHNRVVMMDELVGDFGAEL
LPFLGFEMGPNILGVEGEEQALPTLLEGEQMDVDKM*
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Synonyms
Publications