NO19G00720, NO19G00720 (gene) Nannochloropsis oceanica

Overview
NameNO19G00720
Unique NameNO19G00720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length876
Alignment locationchr19:256905..257780 -

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Properties
Property NameValue
DescriptionDeoxyribodipyrimidine photo-lyase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:256905..257780 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036155Crypto/Photolyase_N_sf
IPR006050DNA_photolyase_N
Vocabulary: Molecular Function
TermDefinition
GO:0016829lyase activity
Homology
BLAST of NO19G00720 vs. NCBI_GenBank
Match: EWM23577.1 (deoxyribodipyrimidine photo-lyase [Nannochloropsis gaditana])

HSP 1 Score: 251.1 bits (640), Expect = 4.100e-63
Identity = 161/305 (52.79%), Postives = 200/305 (65.57%), Query Frame = 0
Query:    6 PALRTRGSRLSSTFSSSSSLAALTRLSA-ATASIQPQAERSIVWFTSGDLRLHDNEALSSSLA-------SSSSCIPLFIFDPSFLSTLAPHLLHLYLLAIADLRNTL------SSNLITRIGPVEQILPAVMEETSASSLWVYEDITENQRALVHRGLSSL-SPSSSPSLKI--KKWTTRLRSSITGGTVGNNWEKDYLPAIKGKPIDPPXXXXXXXXXSFSDAI----TDKGRLPSFEELLELAYGHEEDVSPSSLPSSLXPS-SAAAIKQARVHAAREEYWTPTYYPHEAG-NEGGMEGGGG 288
            P+L   GS      +S   ++ + R SA +T+S Q   +RS+VWFT GDLRLHDNEAL  S +            IPL I DP+FL+TL+PH LHLYLLA+ DLR++       SS LI R GPVE++LPA++  + A+SLWVYED+TENQR+LV RGLSSL SPSSS S+ I   KWTTRLRSS+ GGTVG+NW KDYLP ++  P+DPP     XXXX           D GR+PSFEELL+L +G EE       PSS  PS +A+ ++QAR  AAREEYWTP+YYP + G  E G EG  G
Sbjct:   53 PSLSCGGSVQLPRGTSPRLVSLIRRFSAGSTSSSQDSIDRSLVWFTRGDLRLHDNEALFKSTSPXXXXXXXXXHIIPLLILDPAFLATLSPHTLHLYLLAVNDLRDSFQRHPHASSPLIVRTGPVEELLPALVHASQATSLWVYEDVTENQRSLVRRGLSSLPSPSSSSSMPITVHKWTTRLRSSVKGGTVGDNWAKDYLPVVQKLPLDPPFPSFPXXXXXXXXXXXWVPEDVGRIPSFEELLQLTFGGEES------PSSPAPSPTASLLRQARALAAREEYWTPSYYPEDQGEGEEGKEGRVG 351          
BLAST of NO19G00720 vs. NCBI_GenBank
Match: XP_021730318.1 (uncharacterized protein LOC110697260 [Chenopodium quinoa])

HSP 1 Score: 69.3 bits (168), Expect = 2.200e-8
Identity = 53/156 (33.97%), Postives = 87/156 (55.77%), Query Frame = 0
Query:   18 TFSSSSSLAALTRLSAATASIQPQAERSIVWFTSGDLRLHDNEALSSSLASSSSCIPLFIFDPSFLSTLAPHLLHLYLLAIADLRNTL---SSNLITRIGPVEQILPAVMEETSASSLWVYEDITENQRALVHRGLSSLS--PSSSPSLKIKKWTT 169
            +FS SS      +L+A T +       ++VWF   DLR+ D+  + S+ ++ S+ +P+++FDP  LS     ++ L LLA+ DLR +L    SNL+ R G VE IL  +++E  A+ L+  E++  + R+LV     SL+  P    + KI+ W T
Sbjct:   26 SFSLSSKTKTKPQLAAQTNN---NGGAAVVWF-KHDLRIDDHPGIVSAASNYSNVVPIYVFDPRILSRFPDEMVELLLLAVEDLRRSLKEHGSNLMIRSGNVESILSELVKEIKATVLFAEEEVEYDMRSLVATVDDSLATDPVLDWNPKIEVWRT 177          
BLAST of NO19G00720 vs. NCBI_GenBank
Match: EOY22929.1 (Hydrolase, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 68.2 bits (165), Expect = 4.900e-8
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 0
Query:   45 SIVWFTSGDLRLHDNEALSSSLASSSSCIPLFIFDPSFLSTLAPHLLHLYLLAIADLRNTL---SSNLITRIGPVEQILPAVMEETSASSLWVYEDITENQRALVHRGLSSLSPSSS 159
            +I+WF   DLRL D+ AL ++  +  S +PL++FD   LS  +  +L L L A+ DLRN+L    SNL+ R G  E ++  +++E  A+ ++V E++    R +V     +L  SSS
Sbjct:   46 AILWF-KHDLRLDDHPALVAAAETHRSLLPLYVFDHRILSRYSDEMLELVLFALEDLRNSLKEQGSNLMIRFGSAENVITELVKEVKATDVFVEEEVEYEMRQIVGVVKDTLETSSS 161          
BLAST of NO19G00720 vs. NCBI_GenBank
Match: EOY22930.1 (Hydrolase, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 68.2 bits (165), Expect = 4.900e-8
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 0
Query:   45 SIVWFTSGDLRLHDNEALSSSLASSSSCIPLFIFDPSFLSTLAPHLLHLYLLAIADLRNTL---SSNLITRIGPVEQILPAVMEETSASSLWVYEDITENQRALVHRGLSSLSPSSS 159
            +I+WF   DLRL D+ AL ++  +  S +PL++FD   LS  +  +L L L A+ DLRN+L    SNL+ R G  E ++  +++E  A+ ++V E++    R +V     +L  SSS
Sbjct:   46 AILWF-KHDLRLDDHPALVAAAETHRSLLPLYVFDHRILSRYSDEMLELVLFALEDLRNSLKEQGSNLMIRFGSAENVITELVKEVKATDVFVEEEVEYEMRQIVGVVKDTLETSSS 161          
BLAST of NO19G00720 vs. NCBI_GenBank
Match: XP_021725782.1 (uncharacterized protein LOC110692994 [Chenopodium quinoa])

HSP 1 Score: 68.2 bits (165), Expect = 4.900e-8
Identity = 51/157 (32.48%), Postives = 87/157 (55.41%), Query Frame = 0
Query:   18 TFSSSSSLAALTRLSAA-TASIQPQAERSIVWFTSGDLRLHDNEALSSSLASSSSCIPLFIFDPSFLSTLAPHLLHLYLLAIADLRNTL---SSNLITRIGPVEQILPAVMEETSASSLWVYEDITENQRALVHRGLSSLSPSS--SPSLKIKKWTT 169
            +F+ + SL++ T+     TA        ++VWF   DLR+ D+  + S+ ++ S+ +P+++FDP  LS     ++ L LLA+ DLR +L    SNL+ R G VE IL  +++E  A+ L+  E++  + R+LV     SL+  +      KI+ W T
Sbjct:   38 SFNRTFSLSSKTKTKPQFTAQTNNNGGAAVVWF-KHDLRIDDHPGIVSAASNFSNVVPIYVFDPRILSRFPDEMVELLLLAVEDLRRSLKEHGSNLMIRSGNVESILRELVKEIKATVLFAEEEVEYDMRSLVATVDDSLATDAVLDWKPKIEVWRT 193          
BLAST of NO19G00720 vs. NCBI_GenBank
Match: KNA10737.1 (hypothetical protein SOVF_141700 [Spinacia oleracea])

HSP 1 Score: 67.8 bits (164), Expect = 6.400e-8
Identity = 37/105 (35.24%), Postives = 66/105 (62.86%), Query Frame = 0
Query:   45 SIVWFTSGDLRLHDNEALSSSLASSSSCIPLFIFDPSFLSTLAPHLLHLYLLAIADLRNTL---SSNLITRIGPVEQILPAVMEETSASSLWVYEDITENQRALV 147
            ++VWF   DLR+ D+  + S+ ++ ++ +P+++FDP  LS     ++ L +LA+ DLR +L    SNL+ R G VE IL  +++E  A+ L+  E++  + R+LV
Sbjct:   49 AVVWF-KNDLRIDDHPGIVSAASNHANVVPIYVFDPRILSRFPDEMVELLILAVEDLRRSLKEHGSNLMIRFGNVENILWELVKEIKATVLFAEEEVEYDLRSLV 152          
BLAST of NO19G00720 vs. NCBI_GenBank
Match: XP_007038428.2 (PREDICTED: uncharacterized protein LOC18605386 [Theobroma cacao])

HSP 1 Score: 67.8 bits (164), Expect = 6.400e-8
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 0
Query:   45 SIVWFTSGDLRLHDNEALSSSLASSSSCIPLFIFDPSFLSTLAPHLLHLYLLAIADLRNTL---SSNLITRIGPVEQILPAVMEETSASSLWVYEDITENQRALVHRGLSSLSPSSS 159
            +I+WF   DLRL D+ AL ++  +  S +PL++FD   LS  +  +L L L A+ DLRN+L    SNL+ R G  E ++  +++E  A+ ++V E++    R ++     +L  SSS
Sbjct:   46 AILWF-KHDLRLDDHPALVAAAETHRSLLPLYVFDHRILSRYSDEMLELVLFALEDLRNSLKEQGSNLMIRFGSAENVITELVKEVKATDVFVEEEVEYEMRQIIGVVKDTLETSSS 161          
BLAST of NO19G00720 vs. NCBI_GenBank
Match: OMO85847.1 (hypothetical protein CCACVL1_09967 [Corchorus capsularis])

HSP 1 Score: 67.4 bits (163), Expect = 8.400e-8
Identity = 41/117 (35.04%), Postives = 69/117 (58.97%), Query Frame = 0
Query:   45 SIVWFTSGDLRLHDNEALSSSLASSSSCIPLFIFDPSFLSTLAPHLLHLYLLAIADLRNTL---SSNLITRIGPVEQILPAVMEETSASSLWVYEDITENQRALVHRGLSSLSPSSS 159
            +I+WF   DLRL D+ AL+++  +  S +PL++FD   L+  +  +L L L A+ DLRN+L    SNL+ R G  E ++  +++E  A+ ++V E+I    R ++     +L  SSS
Sbjct:   46 AILWF-KHDLRLDDHPALAAAAETHRSVLPLYVFDHRILARYSDEILELVLFALDDLRNSLKEHGSNLMIRFGSAENVITELVKEVKATDVFVEEEIEYEMRQMIGVVKDTLEMSSS 161          
BLAST of NO19G00720 vs. NCBI_GenBank
Match: XP_021842220.1 (uncharacterized protein LOC110782386 [Spinacia oleracea])

HSP 1 Score: 66.6 bits (161), Expect = 1.400e-7
Identity = 37/105 (35.24%), Postives = 65/105 (61.90%), Query Frame = 0
Query:   45 SIVWFTSGDLRLHDNEALSSSLASSSSCIPLFIFDPSFLSTLAPHLLHLYLLAIADLRNTL---SSNLITRIGPVEQILPAVMEETSASSLWVYEDITENQRALV 147
            ++VWF   DLR+ D+  + S+ ++ +  +P+++FDP  LS     ++ L +LA+ DLR +L    SNL+ R G VE IL  +++E  A+ L+  E++  + R+LV
Sbjct:   49 AVVWF-KHDLRIDDHPGIVSAASNHTDVVPIYVFDPRILSRFPDEMVELLILAVEDLRRSLKEHGSNLMIRFGNVENILWELVKEIKATVLFAEEEVEYDLRSLV 152          
BLAST of NO19G00720 vs. NCBI_GenBank
Match: KPL74503.1 (deoxyribodipyrimidine photolyase [Bellilinea caldifistulae])

HSP 1 Score: 65.9 bits (159), Expect = 2.400e-7
Identity = 40/96 (41.67%), Postives = 52/96 (54.17%), Query Frame = 0
Query:   47 VWFTSGDLRLHDNEALSSSLASSSSCIPLFIFDPSFLSTLAPHLLHLYLLAIADLRNTL---SSNLITRIGPVEQILPAVMEETSASSLWVYEDIT 140
            +W+   DLRL DN AL S+L    S +PLFI DP  L+T A +  H     +  L   L    S LI R G  E++LPAV+ ET A  ++  ED T
Sbjct:   14 IWWIRRDLRLKDNPALHSALQGGHSVLPLFILDPRLLNTAAENRRHFLFNGLRRLDEDLRSRGSRLIVRSGLPEEVLPAVVAETGADGVFAEEDYT 109          
The following BLAST results are available for this feature:
BLAST of NO19G00720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 13
Match NameE-valueIdentityDescription
EWM23577.14.100e-6352.79deoxyribodipyrimidine photo-lyase [Nannochloropsis... [more]
XP_021730318.12.200e-833.97uncharacterized protein LOC110697260 [Chenopodium ... [more]
EOY22929.14.900e-835.90Hydrolase, putative isoform 1 [Theobroma cacao][more]
EOY22930.14.900e-835.90Hydrolase, putative isoform 2 [Theobroma cacao][more]
XP_021725782.14.900e-832.48uncharacterized protein LOC110692994 [Chenopodium ... [more]
KNA10737.16.400e-835.24hypothetical protein SOVF_141700 [Spinacia olerace... [more]
XP_007038428.26.400e-835.04PREDICTED: uncharacterized protein LOC18605386 [Th... [more]
OMO85847.18.400e-835.04hypothetical protein CCACVL1_09967 [Corchorus caps... [more]
XP_021842220.11.400e-735.24uncharacterized protein LOC110782386 [Spinacia ole... [more]
KPL74503.12.400e-741.67deoxyribodipyrimidine photolyase [Bellilinea caldi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00720.1NO19G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100610g5gene6879Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00720.1NO19G00720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00720 ID=NO19G00720|Name=NO19G00720|organism=Nannochloropsis oceanica|type=gene|length=876bp
ATGCAGGCATTCCAGCCCGCCCTCCGCACCCGCGGGAGCCGCCTTTCTTC
AACCTTCTCCTCTTCCTCATCCCTCGCTGCCCTTACTCGCCTCTCTGCCG
CCACCGCATCAATTCAACCCCAAGCAGAACGATCCATCGTTTGGTTTACT
TCCGGTGACCTCCGCCTGCACGACAATGAAGCCCTCTCTTCCTCCCTCGC
CTCCTCCTCCTCCTGTATCCCGCTCTTCATTTTCGACCCCTCCTTCCTCT
CCACCCTCGCCCCCCATCTCCTCCACCTCTACCTCCTGGCCATTGCCGAT
CTTCGCAACACCCTCTCCTCCAACCTTATCACGCGCATCGGGCCCGTCGA
ACAAATTCTGCCTGCCGTCATGGAGGAAACCTCGGCCTCCTCCCTCTGGG
TCTATGAGGACATAACCGAGAACCAACGTGCACTCGTGCACCGAGGCCTG
TCCTCTCTCTCCCCCTCCTCCTCCCCTTCCCTCAAAATCAAGAAATGGAC
CACCCGTCTCCGTTCATCCATTACCGGTGGCACCGTGGGCAACAATTGGG
AAAAAGACTACTTGCCCGCCATTAAGGGCAAGCCCATCGACCCCCCCCTT
CCCCCTCCCTCACTCCCTCCCAACTCGTTCTCGGATGCCATCACCGACAA
GGGCCGTCTCCCTTCCTTTGAAGAACTGTTGGAATTGGCCTATGGTCATG
AAGAAGATGTCAGCCCTTCCTCCCTCCCTTCCTCCCTCCCGCCCTCCTCC
GCCGCTGCTATCAAGCAAGCCCGGGTGCATGCCGCAAGGGAAGAATACTG
GACGCCTACGTACTACCCGCACGAGGCAGGAAACGAGGGTGGGATGGAGG
GAGGGGGGGGGAGTCCTTGGCGTTGA
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protein sequence of NO19G00720.1

>NO19G00720.1-protein ID=NO19G00720.1-protein|Name=NO19G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MQAFQPALRTRGSRLSSTFSSSSSLAALTRLSAATASIQPQAERSIVWFT
SGDLRLHDNEALSSSLASSSSCIPLFIFDPSFLSTLAPHLLHLYLLAIAD
LRNTLSSNLITRIGPVEQILPAVMEETSASSLWVYEDITENQRALVHRGL
SSLSPSSSPSLKIKKWTTRLRSSITGGTVGNNWEKDYLPAIKGKPIDPPL
PPPSLPPNSFSDAITDKGRLPSFEELLELAYGHEEDVSPSSLPSSLPPSS
AAAIKQARVHAAREEYWTPTYYPHEAGNEGGMEGGGGSPWR*
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Synonyms
Publications