NO19G00460, NO19G00460 (gene) Nannochloropsis oceanica

Overview
NameNO19G00460
Unique NameNO19G00460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2617
Alignment locationchr19:174930..177546 +

Link to JBrowse

Properties
Property NameValue
DescriptionHeat shock protein DnaJ, cysteine-rich domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:174930..177546 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Vocabulary: INTERPRO
TermDefinition
IPR036410HSP_DnaJ_Cys-rich_dom_sf
IPR0360102Fe-2S_ferredoxin-like_sf
IPR0010412Fe-2S_ferredoxin-type
Vocabulary: Biological Process
TermDefinition
GO:0022900electron transport chain
Homology
BLAST of NO19G00460 vs. NCBI_GenBank
Match: EWM23547.1 (expressed unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 152.9 bits (385), Expect = 1.600e-33
Identity = 91/182 (50.00%), Postives = 110/182 (60.44%), Query Frame = 0
Query:    1 MTRQRRRD--ASPS-SPSSILLPSFLCLGLLINATQAFHLYLRP--HTTSYFSPPTSRRPSXXXXXXXXXXXXXXXXXXXXSLRLAASDTIEAPPQSDAEGTVTVRFVNTPEGSDVVALAQEGENLMKVGDRVGLKIPRACCTGLCGTCTSDLKDPTYNMRGDSKPSSAREGYQTIRACSTQ 178
            M R RRR+   SPS  PSS  L   L L  L + ++AF LY RP  H TS+      R+P                          AS T  A P  +   T+ VRF+NTP+G+DVV  AQEG+NLMKVGD+ G+ IPRACCTGLCGTCTSDL+DP+Y  +G+ KP+ AREGYQTIRACSTQ
Sbjct:    1 MARHRRREDRGSPSIFPSSSAL--LLFLSCLCDNSRAFCLYQRPAHHFTSFLL--HGRQP-----FSSFPLASSFSPSASLPTSSLASSTSPAEPLDNVRETIQVRFINTPDGNDVVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPSYTFKGEDKPAGAREGYQTIRACSTQ 173          
BLAST of NO19G00460 vs. NCBI_GenBank
Match: EWM23548.1 (Heat shock protein DnaJ, cysteine-rich domain protein [Nannochloropsis gaditana])

HSP 1 Score: 132.1 bits (331), Expect = 2.900e-27
Identity = 65/90 (72.22%), Postives = 70/90 (77.78%), Query Frame = 0
Query:  187 MVIDVYRIKKKKGAKGGSEQAENPMERFSGDWETNFRQGSKWSVPSTSTSGMALRQAKPDEGGACTTCGGTGKIPCFNCKGKGVLTSGQR 277
            MV+DVYRIKKKKGAK G E+  N M+RFSGDWET F+QGSKWSVP T   GMALRQ+KPD G  C TC G GK PCFN  GKGVL SGQR
Sbjct:    1 MVVDVYRIKKKKGAK-GQEEDGNYMQRFSGDWETTFKQGSKWSVPDTKAGGMALRQSKPDGGAVCPTCKGGGKNPCFNXXGKGVLVSGQR 89          
BLAST of NO19G00460 vs. NCBI_GenBank
Match: OSX70920.1 (hypothetical protein BU14_0634s0006 [Porphyra umbilicalis])

HSP 1 Score: 127.1 bits (318), Expect = 9.400e-26
Identity = 75/191 (39.27%), Postives = 104/191 (54.45%), Query Frame = 0
Query:   87 EAPPQSDAE-----GTVTVRFVNTPEGSDVVALAQEGENLMKVGDRVGLKIPRACCTGLCGTCTSDLKDPTYNMRGD---SKPSSAREGYQTIRACSTQVKLPPGCEEMVIDVYRIKKKKGAKGGSEQAENPMERFSGDWETNFRQGSKWSVPSTSTSGMALRQAKPDEGGACTTCGGTGKIPCFNCKGKG 270
            EA P + ++     G V VRF+NTP G DV+A+A  GE L+ VGD VGL IPR+C +GLCG+CT +L+DP++    D         R G+QTIRACST+V L  GC EMV+DV R++          +  +P  RF G  +T +             +G A + A      +C  C G G+  C+ C+G G
Sbjct:  106 EAAPSATSDFDLGPGQVAVRFINTPTGEDVLAVANPGERLLSVGDGVGLTIPRSCVSGLCGSCTCELQDPSWVPEDDXXXXXXXXGRPGWQTIRACSTEVMLLDGCTEMVVDVVRMRTT------GRRERDPFSRFDG-LDTGYE------------AGAAPKVAGIRRDVSCAHCAGVGRHTCYACEGTG 277          
BLAST of NO19G00460 vs. NCBI_GenBank
Match: XP_005708767.1 (hypothetical protein Gasu_06560 [Galdieria sulphuraria] >EME32247.1 hypothetical protein Gasu_06560 [Galdieria sulphuraria])

HSP 1 Score: 108.6 bits (270), Expect = 3.400e-20
Identity = 63/175 (36.00%), Postives = 83/175 (47.43%), Query Frame = 0
Query:   96 GTVTVRFVNTPEGSDVVALAQEGENLMKVGDRVGLKIPRACCTGLCGTCTSDLKDPTYNMRGDSKPSSAREGYQTIRACSTQVKLPPGCEEMVIDVYRIKKKKGAKGGSEQAENPMERFSGDWETNFRQGSKWSVPSTSTSGMALRQAKPDEGGACTTCGGTGKIPCFNCKGKGV 271
            G + VRF+NTP G D+V  A+  ENLM V D VGLKIPR C TG+CGTCT++L+D            S+ +G   IR C T V LP GC+EMV+DV+  +        +E+      + + D                                 CTTC G G + CF C G G+
Sbjct:  102 GEIAVRFINTPTGEDIVVAAKPSENLMDVADSVGLKIPRYCETGVCGTCTAELED-----------LSSVDGRVAIRPCCTDVHLPTGCDEMVVDVFHCRNFSSVVDYTEEVLQSDRKLTRD---------------------------------CTTCLGQGIVSCFPCGGSGL 232          
BLAST of NO19G00460 vs. NCBI_GenBank
Match: XP_005841458.1 (hypothetical protein GUITHDRAFT_160680, partial [Guillardia theta CCMP2712] >EKX54478.1 hypothetical protein GUITHDRAFT_160680, partial [Guillardia theta CCMP2712])

HSP 1 Score: 96.3 bits (238), Expect = 1.800e-16
Identity = 57/164 (34.76%), Postives = 82/164 (50.00%), Query Frame = 0
Query:  111 VVALAQEGENLMKVGDRVGLKIPRACCTGLCGTCTSDLKDPTYNMRGDSKPSSAREGYQTIRACSTQVKLPPGCEEMVIDVYRIKKKKGAKGGSEQAENPMERFSGDWETNFRQGSKWSVPSTSTSGMALRQAKPDEGGACTTCGGTGKIPCFNCKGKGVLTSG 275
            V+A A  G+ L+ VGD VG+ +PR C TGLCG+CT D++DP++       P S        RAC T+V LP GC+E+V+DVYR+         S+  ++PM RFS   +      ++W++P                       G  GK+ C  C  KGV + G
Sbjct:   77 VIAAANPGDVLLAVGDSVGISLPRGCQTGLCGSCTCDIEDPSF-------PGSR----SVARACCTKVSLPEGCDELVVDVYRL-----LSSSSKPKKDPMARFSSLDDPKVGFKARWNLPRD---------------------GPEGKVDCPACGAKGVSSKG 203          
BLAST of NO19G00460 vs. NCBI_GenBank
Match: XP_005537301.1 (hypothetical protein CYME_CMN164C [Cyanidioschyzon merolae strain 10D] >BAM81265.1 hypothetical protein CYME_CMN164C [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 88.2 bits (217), Expect = 4.800e-14
Identity = 59/167 (35.33%), Postives = 84/167 (50.30%), Query Frame = 0
Query:   94 AEGTVTVRFVNTPEGSDVVALAQEGENLMKVGDRVGLKIPRACCTGLCGTCTSDLKDPTYNMRGDSKPSSAREGYQTIRACSTQVKLPPGCEEMVIDVYRIKKKKGAKGGSEQAENPMERFSG-DWETNFRQGSKWSVPSTSTSGMALRQAKPDEGGACTTCGGTGK 260
            A   V VRF+NTP G ++  +A  G  ++ V D +GL+IPR C +G+CG CT D+  P           S   G QT+R CST+V   PG +E+VIDVYR+K+              + RF   D+E  ++ G++      +    A   A+P     C  C GTGK
Sbjct:  121 AASLVKVRFINTPGGLELETMAPPGSIVLAVADELGLRIPRGCTSGVCGACTCDMVHP-----------SLPGGRQTVRVCSTKVATFPGIDEIVIDVYRMKESATRDAYQSSTLRALNRFDNIDFE--YKAGAQ----PRAIMNPANPFARP-RTVRCEKCKGTGK 269          
BLAST of NO19G00460 vs. NCBI_GenBank
Match: CBN79703.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.9 bits (185), Expect = 2.500e-10
Identity = 52/144 (36.11%), Postives = 71/144 (49.31%), Query Frame = 0
Query:   95 EGTVTVRFVNTPEGSDVVALAQEGENLMKVGDRVGLKIPRACCTGLCGTCTSDLKDPTYNMRGDSKPSSAREGYQTIRACSTQVKLPPGCEEMVIDVY--RIK-------------KKKGAKGGSEQAENPMERFSGDWETNFR 224
            +G V VRF+NT    DV   A  GE + KV  R G+KI  AC +G+CGTC +DL+        D+   S R G+Q +RAC T     PG     +D+Y  R K             K+KG K  +E   + M+RF   WE  ++
Sbjct:   36 KGQVGVRFINTSGDPDVCTAAYPGEIVTKVAKRCGVKIATACNSGICGTCMTDLE--------DANGKSYRPGFQVVRACVT-----PG-----LDIYPNRAKSGKLNNRLAGSKGKRKGEKMEAETVVDAMKRFEEGWEDEYQ 161          
The following BLAST results are available for this feature:
BLAST of NO19G00460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM23547.11.600e-3350.00expressed unknown protein [Nannochloropsis gaditan... [more]
EWM23548.12.900e-2772.22Heat shock protein DnaJ, cysteine-rich domain prot... [more]
OSX70920.19.400e-2639.27hypothetical protein BU14_0634s0006 [Porphyra umbi... [more]
XP_005708767.13.400e-2036.00hypothetical protein Gasu_06560 [Galdieria sulphur... [more]
XP_005841458.11.800e-1634.76hypothetical protein GUITHDRAFT_160680, partial [G... [more]
XP_005537301.14.800e-1435.33hypothetical protein CYME_CMN164C [Cyanidioschyzon... [more]
CBN79703.12.500e-1036.11expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00460.1NO19G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100689g1gene6905Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00460.1NO19G00460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00460 ID=NO19G00460|Name=NO19G00460|organism=Nannochloropsis oceanica|type=gene|length=2617bp
GGCGTGACTTGATTTGTTTATTTGAAGCATACCCTTTTTTGTTGGTATAT
CTCAGGGCATTTCACAGACGCGTGTATCGAGCAGGTCGCTATGGACAATA
ATCTGTCCGTGGTGTGATGGTTCGAGACCTTTTGGACCCCCGAGAGAGAG
ATCTGTCGACGAGACAAGCGGGATAAAGGACGAGCATGGTAAGAACCCAT
CTCTTGCGGGATGATGACAAGGAATGCCTTGTGGTGCATTTCGTGGCTCT
GTAGGCCAAAGCAGACGTCGCAAATGGCAACCTTTTTTAGTTCCCACCTT
CACCTCCTACCCGAGCACCTACCCACCTACCACTCCGCTTGATCTAACAA
GCTTCGTGCTGCTCGTCGCCACAGTCAAGTGGATGCCTGGAGTGGACGGC
ATCGTTTGATGGACCTGTGATTTCGTGCATCGCATTCATCTTTCTCCTCA
CCATCACGGGCCACAAACACACTCATAGGGAGACCAGTCACCATGACCCG
GCAACGGCGGAGAGACGCCTCCCCTTCCTCCCCCTCCTCCATCCTCCTCC
CCTCCTTCCTCTGTCTCGGCCTCCTCATCAATGCCACCCAAGCCTTCCAC
CTCTATCTAAGACCACACACCACCTCATATTTCTCCCCTCCGACTTCCCG
CCGCCCGTCGTTCCCCTCCTACCCCTCCTCTTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCCCCTTCTCCTTACGGTTGGCTGCCTCCGATACAATC
GAGGCTCCGCCCCAATCTGACGCAGAAGGCACGGTCACTGTCAGATTTGT
CAACACGCCGGAAGGTTCGGATGTGGTGGCCTTGGCGCAAGAGGGGGAGA
ACTTGATGAAGgtaggacgggagggcaggacggcggggcggggaggggag
ggaaagatggaatggccttggaaagatggaatccttggcagtttaaaggc
agggttgaggagagcctctcgatcgcctgttgattataaaaatagtatta
accttttctaactcgacgctcatctccccttctcatttcatgcccccgtc
ccccttccccccttccttcccttcctagGTAGGCGACAGGGTAGGTCTGA
AAATCCCCCGTGCGTGCTGCACGGGCCTCTGTGGCACGTGCACGAGCGAC
CTGAAGGACCCCACCTACAACATGCGTGGGGACAGCAAGCCCTCCTCGGC
TCGTGAGGGGTACCAGACCATCCGCGCTTGTTCCACGCAGgtaggctccc
tcccttcctccctccctccctcccgtcatagataccgccaccgtatcctt
ctgaatcaaatagaatctgggaaccaacctcgtcctcccgtcctctctcc
ctccctccttctctccctccctccctccctccatccatccctccctccct
cccaaagGTCAAGCTGCCTCCCGGCTGCGAAGAGATGGTCATCGACGTTT
ACCGCATCAAGAAGAAGAAGGGGGCCAAGGGTGGATCCGAACAAGCCGAG
AATCCCATGGAGCGATTCTCCGgtaagtgtctccctcctaacctacctcc
ctccttccctccctccctccctctctctccctccctctcttgtcttcatc
tgccggtctttttttccctcctgccctccccctactcctctccatcataa
ttcctttcctctcaatggctgatgcacacctcatcctcttttctgtccct
ccctccctccctccctccctccctcccagGCGATTGGGAAACCAATTTTC
GACAAGGCAGCAAGTGGTCGGTGCCCTCTACCAGCACCAGgtgcgtaccg
gcgtcgagggagggagggagggagggagagaggaagaggcacgaggtggt
cggaatctaggagcattgggggagggatggaaggagggaaggatggaagg
agggtgagaggatttggatgacttcgattgcactgctttgtcgaccgact
ccgtctcctccctccccctatttcctccttccatccctccctacctcctc
cttttccttaattagTGGAATGGCGCTGCGGCAGGCCAAGCCAGACGAAG
GAGGTGCCTGCACGACCTGTGGAGGGACGGGCAAGATCCCGTGTTTTAAT
TGCAAGgtagggagggagggaaggagggagggaaggagggagggaaggag
ggagggagcaaggtcagattcaagagcgcggtgctctgctcctctcgctc
atcgtctccctcttttcccctccctttcttccagGGCAAGGGAGTGCTGA
CCTCAGGTCAGCGGTCTCTGACGTGCTACATATGTAAGGGTGAAGGTCAA
TACTTCTGCGCGGATTGCCAAGCCACGGGCATGATTGGTCGGAAGAAGGT
TTAGATTGATCAGTATGGAGAATGTGAGGAATGGAGACCGTTTATTTAAT
GCGACATTCAAATGATGATTATGATGAGAGGAGAGGCGAGAAAGAATGAG
AAATACACTACTTAGATCGTGGGGAGAAAAAAATGAGGGAGAGCTATGTG
GGCATGTGATGAGCGCATACAGGGGGTGGGTAGAAGGAGAAAGGAAGCAG
AAAGATTTAAAAAAAAAAACGAGGAACATGAAAAGGAAAAGACTTAGCAT
GTCCTCTGGTCTTTGTC
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protein sequence of NO19G00460.1

>NO19G00460.1-protein ID=NO19G00460.1-protein|Name=NO19G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MTRQRRRDASPSSPSSILLPSFLCLGLLINATQAFHLYLRPHTTSYFSPP
TSRRPSFPSYPSSSSSSSSSSSSSPFSLRLAASDTIEAPPQSDAEGTVTV
RFVNTPEGSDVVALAQEGENLMKVGDRVGLKIPRACCTGLCGTCTSDLKD
PTYNMRGDSKPSSAREGYQTIRACSTQVKLPPGCEEMVIDVYRIKKKKGA
KGGSEQAENPMERFSGDWETNFRQGSKWSVPSTSTSGMALRQAKPDEGGA
CTTCGGTGKIPCFNCKGKGVLTSGQRSLTCYICKGEGQYFCADCQATGMI
GRKKV*
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Synonyms
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