NO19G00420, NO19G00420 (gene) Nannochloropsis oceanica

Overview
NameNO19G00420
Unique NameNO19G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2898
Alignment locationchr19:162647..165544 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:162647..165544 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO19G00420 vs. NCBI_GenBank
Match: EWM23601.1 (hypothetical protein Naga_100139g8 [Nannochloropsis gaditana])

HSP 1 Score: 80.1 bits (196), Expect = 3.200e-11
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 0 
Query:  354 FHYLGEQKKLVRTYARFTLGLGANWSRDLREVVSARGVALSDLSLSDWSQSELDALYQYWSVESPGMEALR 425
            FHYL  QK+L+R YAR TLGLG  W   L+ + SARG+ L+    S W+Q ELD LY+ W ++ P  E LR
Sbjct:   60 FHYLNAQKRLLRDYARTTLGLGVRWRSSLQGLKSARGIRLATTPSSQWTQDELDCLYRKWDLDRPNSEELR 130
The following BLAST results are available for this feature:
BLAST of NO19G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23601.13.200e-1150.70hypothetical protein Naga_100139g8 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00420.1NO19G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607009gene_9744Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00420.1NO19G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00420 ID=NO19G00420|Name=NO19G00420|organism=Nannochloropsis oceanica|type=gene|length=2898bp
CCAAGTTGCTGAATGACGACGCCGGGGTCGCTTTCGGCGCTGTACCGCCC
ATCATGGACGGAAATACCACCATCATGCGGCGTTCCTTGAGCTCCAGTGC
ATGGCATTGTACTCCTTTAACACCTGCAGTAGAAATCTGAAAGGTCCGCT
GCTCAAGCTGCCCCACCATTGGCAGTGCCCAAGTAAGCGCCTCACTCCCC
CTCTATTTCTTGCTCCTCTTTATTTCCATTCCTTTCAACCCGCCACAGAC
ACAGCCGCTGCTGGGACGAACGCCGTACCTATGTCAACACCCTTCTCGTC
GCTCTTACTCCCTCAAACCTCTCCTCTCCTTCCTCCTCCTCCCGTTCCAC
ATCCTGTCAATCCGGACAGCCACCAGCATCGCCATCCCTTCATCCCAACT
TACCTCCTCCCTTCACTTTCTCCTGCTGCTGCCGCTGATACCACAGCCAC
CGCCGCTCGTCCCGCCTACAACGCCTATCCATCTCACACACAACTACCCC
CGGAATCCTCCCTTACCTCCCTTCTGCCCTCCATCCCTTCCTCTTCCTCC
ACGCCGACGGACGAAAGGCCTCTACCTCCCCCTCCTCTTCCTTCTTCTTC
CTCTTCAACTGCAGCTGCTTCTCCTCGTGGCCCTTCGCACCCTCATCTCC
CTCCTCCTCCCTCTTTCCCCACCTCCGCGTTGTTCTCCTCGCACGCATGT
AAAACATTTCCCCCACCTACTGACCATCACCCCCCCCCTCAAAGTAGCAG
CAGCACCAGTAGCACCACCACCACCACCAGCAGCAGTAGAGCCAACCTTC
CCTCCTTCTTCCCGATGCTCCCTCCCAAGACCCAAGTGAGGAAAGGAGAG
AAGGGAGGAAGGGAAGGAGGGAAGAGAGGGGTTATGTATTCCGACCGTAA
CCAAGGCACAGGCCCGGATACGAAGGGAGGGAAGAAGGGCGGGAAGCAGG
AGGGGTTTCCCCAACCACCCATACCATCACCAGCAAATCCATCAGCAACA
CCCAAAAAAAGAACAGCAACAGTAGCAACAGCAACAGCAATAACATCCAC
ATCAGCAGCAGGCACAGCAGCAACAACACCACCACCAGCGACACCACCAA
CAAGAGCAATTAAAGAGAAAAAAGAAGACAAGGAGGGGGTTGGGGGAGGG
CCTAAGAAATTCCATTACTTGGGCGAGCAAAAAAAGCTGGTGAGGACGTA
TGCAAGGTTCACTTTGGGGCTAGGCGCTAACTGGAGCCGGGACTTGAGGG
AGGTGGTGAGCGCGCGGGGTGTGGCGCTGAGTGACTTGAGTTTAAGCGAC
TGGTCGCAGAGTGAGCTGGACGCATTGTACCAGTACTGGAGCGTGGAGAG
CCCGGGGATGGAGGCCTTGAGGGAGCACTGGGTTGGGGAGAAGAGGCTCC
AGGACCCTTCCGTCGGCACCTCCATCGGCACTTCCGTCGCGACCTCCGGG
GGCAGTGGGGGAGGGAGGTGGGGAGGACAGACTGCTGCTGCTGCTGCTAC
TACTACTGCTACTGCTTATGCCGTGGATCCTTCTTTTGTTCCGCCCTTGT
CCCCCTCCTCCTCGTCTTGCACCCATTCAGACTCCTCCGCCTCCTCCTCC
CACCCTTCCTCCTCCTCCTCCGTAGCTGAAGTACTATTATTGTCAACCGC
AGGGGCAGAAGCGGTAGAAGTATCAACACGAGCAACAGCAGGAGCAGCAA
CATCAGCAGCAACAGAAGCAGCCGCAGCAGCCGCAGCAGCAGCAGCAGTA
AAATGGGAAGGGCTGAAGGCAATGATGCGGCAGGTACGGGATTTGGCGGG
TGCCCTCTCTCGCGCAAACGGAAAAAAGTATTCGGAGCCGTCGGCGGGAA
GACGGGAAGGAGGGAATGGAGGGAGGGAGGGAGGGAGGGAAGAGGAAGGA
AGAGTGAGGTGTGTGTCGAGGGCCACGTCCACGGTGGGGGATTGGAAGAC
CGAGGAAGGGCGGAAGAATGATAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCACAATAGCGGAAGT
GATGATGACAAGAGAAGTAAGCTGGAGCAGGGGGAGGGGGGGAGGGAGGG
AGGGAGGGAGGGAGGCGAGGAGGAGGAGGAGGCGGGAGAAGGTCCTATCA
AACGCCCGCGGATGGACCTGCCCTCTCCTCCTTACAAAACAGCAGGTGTC
AAGAGAGAGGACGTGGTGGAGAGGTTGAAAGAAGGACTTAGGGAAATACA
AGAGAGGCTGAAGGAGGCGGTGCGAGAGATGGAGGAGATGGCCCCTCTCT
CCCTCCCTCCCTCCCCCCCTCTCTCGTTCCAATAAGGGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGAGGAAAAGTGTAAATTAGGGAAGAGACGCGACCG
TGCCTGTGCATATCTAAAAGAGAGGCTGTCTCTATCTCTCTGTCTTTCTG
TGTGTGTAAGAGAGAGGAAATGCTTCCATGCCTGTGTATACGTCAGAGAG
ATGCTGCCCTTGTGTCTGTGTGTGTCTGTGGTTGATGCCTGTGCGTGTGT
AAGAGAAAGGAAGCGCCTGTGCGTGTGTGTAATTGTACATATATAAGAGG
AAGGAAGCCCCTTGTGTAGATGTATGGACGTCATGGATCTCTTCCCGTGC
TTTGCGATGGATGGAGGAGGTTGAGGAAGAGGGGAAAGGAGGGGCGATAC
CCGAATTTACCCGTGGAAGCAAAGGCAACGAAAAACGAGGCAATTGTAAG
GGAGGTGAGTGTAAAGGGATTGAAGAGTGATTGAGTGTGTCACAGCAACA
ATAATTATAGAACGCCGATTGATGTGCATGTGATATAGCTAAGAAGGGGA
TGAGGCCAAAAAAGGAAGGAGAGAGGACGATAGATGCTTCAGTGTGCA
back to top

protein sequence of NO19G00420.1

>NO19G00420.1-protein ID=NO19G00420.1-protein|Name=NO19G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=745bp
MALYSFNTCSRNLKGPLLKLPHHWQCPSKRLTPPLFLAPLYFHSFQPATD
TAAAGTNAVPMSTPFSSLLLPQTSPLLPPPPVPHPVNPDSHQHRHPFIPT
YLLPSLSPAAAADTTATAARPAYNAYPSHTQLPPESSLTSLLPSIPSSSS
TPTDERPLPPPPLPSSSSSTAAASPRGPSHPHLPPPPSFPTSALFSSHAC
KTFPPPTDHHPPPQSSSSTSSTTTTTSSSRANLPSFFPMLPPKTQVRKGE
KGGREGGKRGVMYSDRNQGTGPDTKGGKKGGKQEGFPQPPIPSPANPSAT
PKKRTATVATATAITSTSAAGTAATTPPPATPPTRAIKEKKEDKEGVGGG
PKKFHYLGEQKKLVRTYARFTLGLGANWSRDLREVVSARGVALSDLSLSD
WSQSELDALYQYWSVESPGMEALREHWVGEKRLQDPSVGTSIGTSVATSG
GSGGGRWGGQTAAAAATTTATAYAVDPSFVPPLSPSSSSCTHSDSSASSS
HPSSSSSVAEVLLLSTAGAEAVEVSTRATAGAATSAATEAAAAAAAAAAV
KWEGLKAMMRQVRDLAGALSRANGKKYSEPSAGRREGGNGGREGGREEEG
RVRCVSRATSTVGDWKTEEGRKNDSSSSSSSSSSSSSSSSSSSSNHNSGS
DDDKRSKLEQGEGGREGGREGGEEEEEAGEGPIKRPRMDLPSPPYKTAGV
KREDVVERLKEGLREIQERLKEAVREMEEMAPLSLPPSPPLSFQ*
back to top
Synonyms
Publications