NO19G00350, NO19G00350 (gene) Nannochloropsis oceanica

Overview
NameNO19G00350
Unique NameNO19G00350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length971
Alignment locationchr19:144051..145021 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:144051..145021 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO19G00350 vs. NCBI_GenBank
Match: XP_005854375.1 (hypothetical protein NGA_0222900 [Nannochloropsis gaditana CCMP526] >EKU21981.1 hypothetical protein NGA_0222900 [Nannochloropsis gaditana CCMP526] >EWM23522.1 hypothetical protein Naga_101879g1 [Nannochloropsis gaditana])

HSP 1 Score: 145.2 bits (365), Expect = 9.300e-32
Identity = 66/84 (78.57%), Postives = 70/84 (83.33%), Query Frame = 0 
Query:    1 MPGFSLRGQDAWRNHPMLANGFKRPIPNFPLACGIFVGLVAVDWAYRAVNGDDHHHGGHASVTFEDDIDGPSTAVISEGKKGGH 85
            MPGFSLR QDAWRNHPMLA+GFKRPIPNF LACGIF+GLVAVDWA +A+NGD HHH    SVTF DDIDGPST VI E  KG H
Sbjct:    1 MPGFSLRSQDAWRNHPMLASGFKRPIPNFTLACGIFLGLVAVDWANKAINGDGHHHANPVSVTFVDDIDGPSTTVIEE-SKGSH 83
The following BLAST results are available for this feature:
BLAST of NO19G00350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854375.19.300e-3278.57hypothetical protein NGA_0222900 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00350.1NO19G00350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101879g1gene6930Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00350.1NO19G00350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00350 ID=NO19G00350|Name=NO19G00350|organism=Nannochloropsis oceanica|type=gene|length=971bp
GCGGTGTTTTTGGCCAGCCCTGTTTGGTTATTTTGAGGCGTAGGAGTGAG
GAAAGTAAGATAGACGAAGGCCAACAAGCGAGGGTGCCTATTGGGTCACG
ACTGTCGAGGTTGTCCTCGAATCCATTACGCGCTTTCGCAACACCACCAC
CGAACACAGACAAATGCTTAGATTCTCTCTCTATCTCTCTGTGACTCTGA
CTGGGTCAGTCTTGGGAGTGGGCTGGCTTGCCTGCCTCCTTCTAGCATGG
CAGATAAGCAGGAGCAGCCCCCACGTAGTCATCATCCTCATCTCCCCCTC
TTGCTTCCTCCACATGTCAAAACACAGAGACGTCATACAGCGTAGCCACC
ATGCCGGGCTTCTCTCTCCGTGGTCAAGACGCGTGGCGGAACCACCCCAT
GCTGGCTAATGGCTTCAAGAGACCAATTCCCAACTTCCCCTTGGCCTGTG
GCATCTTCGTTGGTCTTGTCGCGGTGGATTGGGCCTACCGGGCAGTCAAC
Ggtacgaacaaacacagacgcgaagacccgaatcccccttctgttcctcc
cttgctccttgacagcggacgccctgcctatgggtgcccatttgtgtacc
gggatttggggagagctcttggtagactcctgatacgataggtgatcgat
ctgtcggccgtcttccccgcactcaccacacaccctcccactccttcatt
ccctccatttttcagGCGATGATCATCACCATGGTGGCCATGCGTCGGTA
ACGTTCGAGGATGACATTGACGGCCCCTCCACTGCCGTCATCTCGGAGGG
AAAGAAGGGTGGGCATCACTAGAGTGAGGGCGGGAAGGCGGCTAGGAGGA
AATGAAAGGAGGTTGTTTTGTAGAAAAGGAGTTAGGGAAGAGGAAAATGA
CGACTGATGAAAGAAAGAAAGAAAAGAAAGGATTCCAAATTTATCGCTTG
AATGGAAAGAGAGCTGTTGCT
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protein sequence of NO19G00350.1

>NO19G00350.1-protein ID=NO19G00350.1-protein|Name=NO19G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MPGFSLRGQDAWRNHPMLANGFKRPIPNFPLACGIFVGLVAVDWAYRAVN
GDDHHHGGHASVTFEDDIDGPSTAVISEGKKGGHH*
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Synonyms
Publications