NO19G00250, NO19G00250 (gene) Nannochloropsis oceanica

Overview
NameNO19G00250
Unique NameNO19G00250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3045
Alignment locationchr19:101587..104631 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:101587..104631 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO19G00250 vs. NCBI_GenBank
Match: EWM23513.1 (hypothetical protein Naga_100352g1 [Nannochloropsis gaditana])

HSP 1 Score: 174.9 bits (442), Expect = 5.400e-40
Identity = 75/88 (85.23%), Postives = 86/88 (97.73%), Query Frame = 0 
Query:  334 MAFLAEVQREICNGEVPALPLRWWGLFCGILNFFFFGWGTVVAGIRSDRPTTVFIGVLQFIVPVFGWLWSMVWGYLLISRAEQYNSLI 422
            MAFLA+VQ+E+C+GEVPALPLRWWGLF GILNFFFFGWGT++AG+RSDRPTT+FIGVLQFI+PV GW+WSMVWGYLLISRAEQY+SLI
Sbjct:    1 MAFLADVQKEVCDGEVPALPLRWWGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQFILPVVGWIWSMVWGYLLISRAEQYSSLI 88
[Close]
BLAST of NO19G00250 vs. NCBI_GenBank
Match: XP_005853602.1 (hypothetical protein NGA_0134302 [Nannochloropsis gaditana CCMP526] >XP_005855396.1 hypothetical protein NGA_0134301 [Nannochloropsis gaditana CCMP526] >EKU20959.1 hypothetical protein NGA_0134301 [Nannochloropsis gaditana CCMP526] >EKU22757.1 hypothetical protein NGA_0134302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 122.1 bits (305), Expect = 4.200e-24
Identity = 51/64 (79.69%), Postives = 60/64 (93.75%), Query Frame = 0 
Query:  334 MAFLAEVQREICNGEVPALPLRWWGLFCGILNFFFFGWGTVVAGIRSDRPTTVFIGVLQFIVPV 398
            MAFLA+VQ+E+C+GEVPALPLRWWGLF GILNFFFFGWGT++AG+RSDRPTT+FIGVLQ   P+
Sbjct:    1 MAFLADVQKEVCDGEVPALPLRWWGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQIFFPL 64
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BLAST of NO19G00250 vs. NCBI_GenBank
Match: CRG99814.1 (conserved Plasmodium protein, unknown function [Plasmodium relictum])

HSP 1 Score: 68.9 bits (167), Expect = 4.200e-8
Identity = 29/77 (37.66%), Postives = 48/77 (62.34%), Query Frame = 0 
Query:  337 LAEVQREICNGEVPALPLRWWGLFCGILNFFFFGWGTVVAGIRSDRPTTVFIGVLQFIVPVFGWLWSMVWGYLLISR 414
            ++ +  +I N EVP        +  G+LN FFFG G ++ GI +     + IG+LQF++P+ GW+W+++WG L+I R
Sbjct:    1 MSNIINKIGNLEVPEQGNSSVNIIFGVLNIFFFGIGMIILGIVNKDVDDLIIGILQFVIPIVGWIWAIIWGILIIIR 77
[Close]
BLAST of NO19G00250 vs. NCBI_GenBank
Match: CRG95341.1 (conserved Plasmodium protein, unknown function [Plasmodium gallinaceum])

HSP 1 Score: 68.9 bits (167), Expect = 4.200e-8
Identity = 30/77 (38.96%), Postives = 47/77 (61.04%), Query Frame = 0 
Query:  337 LAEVQREICNGEVPALPLRWWGLFCGILNFFFFGWGTVVAGIRSDRPTTVFIGVLQFIVPVFGWLWSMVWGYLLISR 414
            ++ +  +I N EVP        +  G+LN FFFG G ++ GI +     + IG+LQFI P+ GW+W+++WG L+I R
Sbjct:    1 MSTIINKISNLEVPENGNSSVNIILGVLNIFFFGMGMIILGIINKDIDDLIIGILQFITPIVGWIWAIIWGVLIIIR 77
[Close]
BLAST of NO19G00250 vs. NCBI_GenBank
Match: XP_764205.1 (hypothetical protein [Theileria parva strain Muguga] >EAN31922.1 hypothetical protein TP04_0570 [Theileria parva])

HSP 1 Score: 68.2 bits (165), Expect = 7.100e-8
Identity = 25/51 (49.02%), Postives = 39/51 (76.47%), Query Frame = 0 
Query:  362 GILNFFFFGWGTVVAGIRSDRPTTVFIGVLQFIVPVFGWLWSMVWGYLLIS 413
            G+LNF  FG+GT ++GI +     + IG++QFI+P  GW+WS++WG+L+IS
Sbjct:   30 GVLNFLLFGFGTAISGITNGCTEDIIIGIMQFIIPFLGWIWSVIWGFLMIS 80
[Close]
BLAST of NO19G00250 vs. NCBI_GenBank
Match: XP_005823030.1 (hypothetical protein GUITHDRAFT_117839 [Guillardia theta CCMP2712] >EKX36050.1 hypothetical protein GUITHDRAFT_117839 [Guillardia theta CCMP2712])

HSP 1 Score: 66.2 bits (160), Expect = 2.700e-7
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 0 
Query:  339 EVQREICNGEVPALPLRWWGLFCGILNFFFFGWGTVVAGIRSDRPTTVFIGVLQFIVP--VFGWLWSM 405
            EV  EI   +VP +  + +GL C ILN FF G G++VAG++ D+ +T+ +GVLQF+    + GW+WS+
Sbjct:    7 EVWDEITQQDVPKVDTKSFGLLCFILNIFFPGIGSIVAGLKGDKTSTMIVGVLQFVTSWFILGWIWSI 74
[Close]
BLAST of NO19G00250 vs. NCBI_GenBank
Match: ETB59176.1 (hypothetical protein YYC_03428 [Plasmodium yoelii 17X])

HSP 1 Score: 65.5 bits (158), Expect = 4.600e-7
Identity = 28/78 (35.90%), Postives = 46/78 (58.97%), Query Frame = 0 
Query:  343 EICNGEVPALPLRWWGLFCGILNFFFFGWGTVVAGIRSDRPTTVFIGVLQFIVPVFGWLWSMVWGYLLISRAEQYNSL 421
            +I N EVP        +  G++N FFFG+G +  GI +  P  + IG+LQ +VP+ GW+W+++W   L  R  +Y ++
Sbjct:    8 KIRNMEVPEDGNNSINVMLGVINIFFFGFGMIAIGIINKDPDDLIIGILQLLVPLVGWIWAILWDISLKGRTSKYTNI 85
[Close]
BLAST of NO19G00250 vs. NCBI_GenBank
Match: XP_022712179.1 (conserved Plasmodium protein, unknown function [Plasmodium berghei ANKA] >CDS45009.1 conserved Plasmodium protein, unknown function [Plasmodium berghei ANKA] >CXI02013.1 conserved Plasmodium protein, unknown function [Plasmodium berghei] >SCL91907.1 conserved Plasmodium protein, unknown function [Plasmodium berghei] >SCN22574.1 conserved Plasmodium protein, unknown function [Plasmodium berghei] >SCM15554.1 conserved Plasmodium protein, unknown function [Plasmodium berghei] >SCM17346.1 conserved Plasmodium protein, unknown function [Plasmodium berghei])

HSP 1 Score: 65.5 bits (158), Expect = 4.600e-7
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 0 
Query:  343 EICNGEVPALPLRWWGLFCGILNFFFFGWGTVVAGIRSDRPTTVFIGVLQFIVPVFGWLWSMVWGYLLI 412
            +I N EVP        +  G++N FFFG+G +  GI +  P  + IG+LQ  VP+ GW+WS++WG L+I
Sbjct:    8 KIRNMEVPENGNSSINVMLGVINIFFFGFGMIAIGILNKDPDDLIIGILQLFVPLVGWIWSILWGILII 76
[Close]
BLAST of NO19G00250 vs. NCBI_GenBank
Match: XP_008625959.1 (hypothetical protein YYE_04096 [Plasmodium vinckei vinckei] >EUD70824.1 hypothetical protein YYG_03946 [Plasmodium vinckei petteri] >KEG01061.1 hypothetical protein YYE_04096 [Plasmodium vinckei vinckei])

HSP 1 Score: 64.7 bits (156), Expect = 7.900e-7
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 0 
Query:  343 EICNGEVPALPLRWWGLFCGILNFFFFGWGTVVAGIRSDRPTTVFIGVLQFIVPVFGWLWSMVWGYLLI 412
            +I N EVP        +  G++N FFFG+G +  GI +  P  + IG+LQ +VP+ GW+W+++WG L++
Sbjct:    8 KIRNMEVPENGNSSINVMLGVVNIFFFGFGMIAIGILNKDPDDLIIGILQLLVPLIGWIWAILWGILIV 76
[Close]
BLAST of NO19G00250 vs. NCBI_GenBank
Match: XP_022811562.1 (conserved Plasmodium protein, unknown function [Plasmodium yoelii] >CDU16498.1 conserved Plasmodium protein, unknown function [Plasmodium yoelii] >CDZ11022.1 conserved Plasmodium protein, unknown function [Plasmodium yoelii])

HSP 1 Score: 64.7 bits (156), Expect = 7.900e-7
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 0 
Query:  343 EICNGEVPALPLRWWGLFCGILNFFFFGWGTVVAGIRSDRPTTVFIGVLQFIVPVFGWLWSMVWGYLLI 412
            +I N EVP        +  G++N FFFG+G +  GI +  P  + IG+LQ +VP+ GW+W+++WG L+I
Sbjct:    8 KIRNMEVPEDGNNSINVMLGVINIFFFGFGMIAIGIINKDPDDLIIGILQLLVPLVGWIWAILWGILII 76
The following BLAST results are available for this feature:
BLAST of NO19G00250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
EWM23513.15.400e-4085.23hypothetical protein Naga_100352g1 [Nannochloropsi... [more]
XP_005853602.14.200e-2479.69hypothetical protein NGA_0134302 [Nannochloropsis ... [more]
CRG99814.14.200e-837.66conserved Plasmodium protein, unknown function [Pl... [more]
CRG95341.14.200e-838.96conserved Plasmodium protein, unknown function [Pl... [more]
XP_764205.17.100e-849.02hypothetical protein [Theileria parva strain Mugug... [more]
XP_005823030.12.700e-744.12hypothetical protein GUITHDRAFT_117839 [Guillardia... [more]
ETB59176.14.600e-735.90hypothetical protein YYC_03428 [Plasmodium yoelii ... [more]
XP_022712179.14.600e-742.03conserved Plasmodium protein, unknown function [Pl... [more]
XP_008625959.17.900e-739.13hypothetical protein YYE_04096 [Plasmodium vinckei... [more]
XP_022811562.17.900e-740.58conserved Plasmodium protein, unknown function [Pl... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00250.1NO19G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674182gene_9764Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100352g1gene6940Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00250.1NO19G00250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00250 ID=NO19G00250|Name=NO19G00250|organism=Nannochloropsis oceanica|type=gene|length=3045bp
AGGTTTCTACCTCACAAGATAACAACCCGATCACCATGCGCCGTGTTTTT
GCCTTTACCATCCTCACGGCAGCAACCAACCTCTTGGCGTTCTCTACCGC
CACGAATGTCGCCACTCCCGAGATTACACACCGCCAACTGGGCGTCGAAA
CGTACAGCTTTGACAAGAAGCACGACACGAACCCCAAGTCTGACTATGAG
CACCGTCCTTATGAGACGAAGCACAAGCCCGACAAGCCCTACTCCGGCTA
TGAGCATCATCCTTATGAAAAAGGTAGTAAGGTTAACAAGGCCTACCCTA
AGTACAACTCGAAAGAGTACTACCACGAGCCCACGCATGTCTCCAAATAC
GATGACGACAAGTACTACCACGAGCCCAAGCACGCCTCCAAGTACGATGA
CGACAAGTACTACCACGAGCCCACGCATGTCTCCAAATACGATGACGACA
AGTACTACCACGAGCCCAATTACGTCTCCAAGTACGATGACAACAAGTAC
TACCACGAGCCCAATTACGTCTCCAAGTACGATGACGACAAGTACTACTA
CGAACCCAAGCACGTCTCAAAGGAAGAAATGCACGTAAAGAAAGACGAAA
AGGCTCATCTCCGTGGCAAGAAGAACGACGATAAGAAGGAGAAGCACCAC
GACAACGAGGGCTTGTTGGAGAAGGGCTTGAAAAAGGCGGTGGACGTCAA
AGAGGGAGTTTGGGACAGCGTCTTAGATCACGACCACCACGGCTCCAAGG
ACGGCAAGACCACCTACATGCACGGAAACCACCACAACACGAACTCTCAC
CCTTACTACTCCTCCTCTTCGGACAGCTTTGCTCGCGGATTCGAGTTGGG
CCGCGCCGAGGGCCGAGCGCAAGGGCTCGCTGAAAGCCAAACGCAGGGGC
GCGgtgagagccgaccgtctaatcatggctcggcctgagagttctggtgg
caggaattgcggaacttttgacactgtgaggccattttcgtttatataca
tgtatcgtgcaaagagtcatccgagacatataaaagactggtcagcccct
tcttggtaaatcaagtataatctgctctatcattttgggaaccgttaaac
aaatgtcgacaatgcttgttgtttgacatcaagcacaataattattataa
tacttataatagtcatacttacttatgattctattttggataataataat
catcacagtaattattattccaccactactattcctacaattacaacaat
ataagtatcacgacttctcttcaggaaacaaagaagaaatactccccaaa
aattatgagaactattgctgtgtgtgcgtgtcgtgacgtttcttcattgg
catcgctctgtcttggatgatctaatgtagTAATAAATAGTGGTAGTAGT
AGTAGTTGTAGTAGTAGCAGCAGTAGTAGTAGTAGTGGTAGTAGTATAAG
TATACTATACTACAGAATATGTgtagacatcttaggcagaagtttcgggg
cccagtgtcttcaaatagacaaatcgcgaggaatgagggccacacacgaa
agcacaggtgatagaaaccgaaaacgaaatcttgcgtgacagcgatttcc
catcaaaagcaacccggatgagaacttcgtttgagggcgaggccatcgca
ataataatagcagcgcttgcattgcgagctgttatgagtattgtgtccaa
atgtacatggctttgtggagtctcatgtcgctacatccattttccgtttc
caccatgcaagcaagcaatcacaccagatagaatttatcactccccgctt
ttccgcctctagagcctagCCTCATTTCTGCTCCGCAACCACACACCCAC
GAAGAGgtgagtggcacaccatagaggacggtgctcaggggatggttgga
acacgcaagggatagagagcggcgttctttttcgtcgtgctcagtcgtaa
ttttttcatactacctcctaacctccctttcgccctccatgagatgacct
gctcatatttcaggagagcacttgtgcatacttgcatacaaacaatcgaa
tacacacttcctcttaataacaggttcaatcggcacctctacttgcttcg
tctaccctttttttcttccgctgtcttctctttgcccaccccagtcaaac
ccacacctctcatccctcccctcccttctcgtcactgtagTAATGGCCTT
CCTGGCTGAGGTGCAACGAGAGATCTGCAATGGAGAAGTACCAGCATTGC
CTTTACGATGGTGGGGATTGTTTTGCGGCATTTTAAACTTCTTCTTTTTC
GGCTGGGgtaagaaagaccatggaggcggagtgaatgtaggagagatggt
atagagaaagcaagggggaagaacaggaaaaaagaagcctgacgagtccc
agcatattttctcgattcacacatttatccagGCACTGTTGTTGCGGGCA
TCCGCAGCGACCGACCCACCACGGTATTTATCGGCGTCCTGCAGgtaaga
gagataagaggagggaaggaggaggagggaggctacatggcggcattccc
ctccaagaaaagaaaccatggcttaatgaggcggagcacactctccctct
cttccatatccttgattttcgcctcatgcttccaatcttcctgcattcat
ccgtgtcatctaccgtcctcacttccctccctcccttccctccctccccc
tctccctcccccactctctcccttcagTTCATCGTCCCCGTGTTTGGCTG
GCTCTGGAGTATGGTTTGGGGGTACCTGCTAATCAGgtaaaaaaaggaag
ggagaatgggatagagaggaaaagggaggcaggctgtgagggaggaaggg
agggaggggagggcagtgcttattatgtggccgaaaatagaaaggaagga
agtgcaggacgatacatcacgcattattcgaataaattttgcctaccaat
attcgctgaccagggttttctcttcctcgctcttaacctctccccaccct
cctccaaacggcagTCGCGCCGAGCAGTACAATAGCTTGATCTAG
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protein sequence of NO19G00250.1

>NO19G00250.1-protein ID=NO19G00250.1-protein|Name=NO19G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MRRVFAFTILTAATNLLAFSTATNVATPEITHRQLGVETYSFDKKHDTNP
KSDYEHRPYETKHKPDKPYSGYEHHPYEKGSKVNKAYPKYNSKEYYHEPT
HVSKYDDDKYYHEPKHASKYDDDKYYHEPTHVSKYDDDKYYHEPNYVSKY
DDNKYYHEPNYVSKYDDDKYYYEPKHVSKEEMHVKKDEKAHLRGKKNDDK
KEKHHDNEGLLEKGLKKAVDVKEGVWDSVLDHDHHGSKDGKTTYMHGNHH
NTNSHPYYSSSSDSFARGFELGRAEGRAQGLAESQTQGRVINSGSSSSCS
SSSSSSSSGSSISILYYRICPHFCSATTHPRRVMAFLAEVQREICNGEVP
ALPLRWWGLFCGILNFFFFGWGTVVAGIRSDRPTTVFIGVLQFIVPVFGW
LWSMVWGYLLISRAEQYNSLI*
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Synonyms
Publications