NO19G00240, NO19G00240 (gene) Nannochloropsis oceanica

Overview
NameNO19G00240
Unique NameNO19G00240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2811
Alignment locationchr19:97538..100348 +

Link to JBrowse

Properties
Property NameValue
DescriptionWsc domain containing 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:97538..100348 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO19G00240 vs. NCBI_GenBank
Match: EWM25571.1 (wsc domain containing 1 [Nannochloropsis gaditana])

HSP 1 Score: 202.2 bits (513), Expect = 3.100e-48
Identity = 96/168 (57.14%), Postives = 117/168 (69.64%), Query Frame = 0
Query:  240 EEEKEKAILSLAECRTNYGERRFLHEDEKALPPILYSFPGSGNTWTRLLIDFSTGIYTGTIFAKPKNKPEKTKLPGQGYCNHMVSAIKAHPNQISPEELFTVPPSDPRIGRCNSLGNITSFDRFILLTRNPFDAIWSEYRRTANDVHYILRDDFDSSQFAHTVVSKSS 408
            E  K + + +L EC+ +Y +RRFL E+E+ +PPILYSFPGSGNTWTRLLID STG+++GT+ AK   K   +K  GQG+C+  VS +KAHPN   PE LFTV       GRCN  G I +F RFILL RNPFDAIWSEYRRTA + H+ L DDFD   FA   +SK S
Sbjct:  273 EHAKGETVPTLEECKASYAKRRFLDENEEVVPPILYSFPGSGNTWTRLLIDISTGVHSGTLLAKRPGK--VSKFEGQGHCSKRVSVLKAHPNHFPPERLFTV------TGRCNDWGGIKAFRRFILLMRNPFDAIWSEYRRTATEAHFFLSDDFDLEAFATVAISKMS 432          
BLAST of NO19G00240 vs. NCBI_GenBank
Match: EWM24512.1 (isoform b [Nannochloropsis gaditana])

HSP 1 Score: 129.4 bits (324), Expect = 2.500e-26
Identity = 73/160 (45.62%), Postives = 91/160 (56.88%), Query Frame = 0
Query:  249 SLAECRTNYGERRFLHEDEKALPPILYSFPGSGNTWTRLLIDFSTGIYTGTIFAKPKNKPEKTK-LPGQGYCNHMVSAIKAHPNQISPEELFTVPPSDPRIGRCNSLGNI-TSFDRFILLTRNPFDAIWSEY-RRTANDVHYILRDD--FDSSQFAHTVV 404
            S  EC   YG RRFL  +    P +LYS+PGSGNT+TRLLID +TG+YTG I     N P   + LPGQ +C+  V AIKAHP Q  P +L      D     C + G +   F+RFILL+R+P+ AIWSEY RR  N  H+   D   FD   F    +
Sbjct:  141 SREECSLRYGARRFLDPNPNFTPAVLYSYPGSGNTFTRLLIDHATGVYTGAILG--VNDPRLAEALPGQSHCDSSVIAIKAHPKQFRPLKLLAGQLPD----NCQAEGGLRQGFERFILLSRDPYAAIWSEYQRRLNNGSHHQAADPAAFDPEHFGRVAM 294          
BLAST of NO19G00240 vs. NCBI_GenBank
Match: XP_005759647.1 (Hypothetical protein EMIHUDRAFT_198564 [Emiliania huxleyi CCMP1516] >EOD07218.1 Hypothetical protein EMIHUDRAFT_198564 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 105.9 bits (263), Expect = 3.000e-19
Identity = 51/130 (39.23%), Postives = 74/130 (56.92%), Query Frame = 0
Query:  260 RRFLHEDEKALPPILYSFPGSGNTWTRLLIDFSTGIYTGTIFAKPKNKPEKTKLPGQGYCNHMVSAIKAHPNQISPEELFTVP---------PSDPRIGRCNSLGNITSFDRFILLTRNPFDAIWSEYRR 381
            R+F      ALPP+L++FPGSGNTW RLL+DF+TG YTG++++     P    LPG+G C+    A+KAHP  +   +    P            P   +C  L     FD  ++LTR+P+ +IW+EY+R
Sbjct:    8 RQFRQPGSGALPPLLWTFPGSGNTWLRLLLDFATGTYTGSVYSDVSLLP---LLPGEGTCDSRALAVKAHPTNVDFHDFVRTPGEPGFRLNVTRKPAYLKCAPL----RFDALVMLTRDPYASIWAEYKR 130          
BLAST of NO19G00240 vs. NCBI_GenBank
Match: XP_001742512.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ92750.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 87.0 bits (214), Expect = 1.400e-13
Identity = 44/110 (40.00%), Postives = 68/110 (61.82%), Query Frame = 0
Query:  271 PPILYSFPGSGNTWTRLLIDFSTGIYTGTIFAKPKNKPEKTKLPGQGYCNHMVSAIKAHPNQISPEELFTVPPSDPRIGRCNSLGNITSFDRFILLTRNPFDAIWSEYRR 381
            PP+LYS PGSGNT+ R L+D +TG Y+G+++    +      LPG+G+CNH VS +KAHPN  S ++L    P+  R        N   FD F ++ R+ + A+++E++R
Sbjct:  280 PPVLYSAPGSGNTFVRTLLDAATGYYSGSLYL---DATLIDSLPGEGHCNH-VSVVKAHPNMHSVDDLLGQTPTLRR--------NCGPFDAFAIVIRDFYHAVFAEFQR 377          
BLAST of NO19G00240 vs. NCBI_GenBank
Match: XP_005757047.1 (hypothetical protein EMIHUDRAFT_259515 [Emiliania huxleyi CCMP1516] >EOD04618.1 hypothetical protein EMIHUDRAFT_259515 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 84.0 bits (206), Expect = 1.200e-12
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 0
Query:  260 RRFLHEDEKALPPILYSFPGSGNTWTRLLIDFSTGIYTGTIFAKPKNKPEKTKLPGQGYCNHMVSAIKAHPNQIS 335
            R+F      ALPP+L++FPGSGNTW RLL+DF+TG YTG++++     P    LPG+G C+    A+KAHP   S
Sbjct:    8 RQFRQPGSGALPPLLWTFPGSGNTWLRLLLDFATGTYTGSVYSDVSLLP---LLPGEGTCDSRALAVKAHPTNAS 79          
BLAST of NO19G00240 vs. NCBI_GenBank
Match: XP_004991370.1 (hypothetical protein PTSG_07574 [Salpingoeca rosetta] >EGD76455.1 hypothetical protein PTSG_07574 [Salpingoeca rosetta])

HSP 1 Score: 81.6 bits (200), Expect = 6.000e-12
Identity = 48/127 (37.80%), Postives = 72/127 (56.69%), Query Frame = 0
Query:  259 ERRFL-HEDEKALPPILYSFPGSGNTWTRLLIDFSTGIYTGTIFAKPKNKPEKTKLPGQGYCNHMVSAIKAH----PNQISPEELFTVPPSDPRIGRCNSLGNITSFDRFILLTRNPFDAIWSEYRR 381
            +R FL    +   P +L+S PGSGNT TRLLI+++TG  TG+ +    +K     LPG+  C+  V A+K H    P + + E+ +T        G C+    ++ F R I+L RNP DAIW++Y+R
Sbjct:   73 QRHFLPPAQQHKAPALLWSQPGSGNTMTRLLIEYATGYLTGSPYG---DKSLLDVLPGEDTCDSSVIAVKLHPLINPRRTNKEDHYTATFKREH-GVCD---GVSVFARAIILVRNPLDAIWADYQR 192          
BLAST of NO19G00240 vs. NCBI_GenBank
Match: ELU11434.1 (hypothetical protein CAPTEDRAFT_193836 [Capitella teleta])

HSP 1 Score: 77.8 bits (190), Expect = 8.700e-11
Identity = 49/144 (34.03%), Postives = 72/144 (50.00%), Query Frame = 0
Query:  257 YGERRFLHE------------DEKALPPI--LYSFPGSGNTWTRLLIDFSTGIYTGTIFAKPKNKPEKTKLPGQGYCNHMVSAIKAHPNQISPEELFTVPPSDPRIGRCNSLGNITSFDRFILLTRNPFDAIWSEYRRTANDVH 387
            YG RR +H             +E +L P+  L S+PGSGNTWTR LI+ STG YTG+I+   K+K  K   PG+G  +  V  +K H            P    ++ R         ++R +L+ R P DA+ +E++RT+   H
Sbjct:  140 YGHRRKIHRNRTSCLDKTFAGNETSLLPLTALASYPGSGNTWTRHLIELSTGFYTGSIY---KDKVLKVSFPGEGEQSGSVITVKTH-----------WPWVTKKLDR-------VEYERVVLIIRTPLDAMKAEFKRTSKRSH 262          
BLAST of NO19G00240 vs. NCBI_GenBank
Match: XP_004993560.1 (hypothetical protein PTSG_05694 [Salpingoeca rosetta] >EGD73997.1 hypothetical protein PTSG_05694 [Salpingoeca rosetta])

HSP 1 Score: 71.2 bits (173), Expect = 8.200e-9
Identity = 49/153 (32.03%), Postives = 75/153 (49.02%), Query Frame = 0
Query:  244 EKAILSLAECRTNYGERRFLHEDEKAL----PPILYSFPGSGNTWTRLLIDFSTGIYTGTIFAKPKNKPEKTKLPGQGYCNHMVSAIKAHPN--QISPE---ELFTVPPSDPRIG-RCNSLGNITSFDRFILLTRNPFDAIWSEYRRTANDVH 387
            E+A     ECR + G R    ED   L    PP+L + PGSGNTW R+L+++ TG ++ +++   K    K  +PG+  C++    +K+H +     PE   +LF + P +   G  C  L     FD  I + R+PF A  +E  R     H
Sbjct:   99 EQADEEARECR-HVGRRYVTPEDRARLPHAKPPLLLTLPGSGNTWFRMLLEYGTGFFSSSVYNDFK---LKEVMPGELRCDNTTIVVKSHMHLGSYDPEVYNKLFKMQPGELAHGYPCREL---RPFDSVIGIIRDPFHAALAEATRQLTGGH 244          
BLAST of NO19G00240 vs. NCBI_GenBank
Match: ELU11425.1 (hypothetical protein CAPTEDRAFT_193827 [Capitella teleta])

HSP 1 Score: 71.2 bits (173), Expect = 8.200e-9
Identity = 44/115 (38.26%), Postives = 60/115 (52.17%), Query Frame = 0
Query:  274 LYSFPGSGNTWTRLLIDFSTGIYTGTIFAKPKNKPEKTKLPGQGYCNHMVSAIKAHPNQISPEELFTVPPSDPRIGRCNSLGNITSFDRFILLTRNPFDAIWSEY--RRTANDVH 387
            L SFPGSGNTWTR LI+ STG YTG I+   K+   K   PG+G  +  V A+K H                PR    + +     ++R +L+TR P DA+ +E+  +RT N  H
Sbjct:  103 LASFPGSGNTWTRHLIELSTGFYTGAIY---KDGLLKKAFPGEGNRSRSVIAVKTH---------------WPRFRTVDRV----EYERVVLITRTPLDAMKAEFTRQRTPNRSH 195          
BLAST of NO19G00240 vs. NCBI_GenBank
Match: XP_002735861.2 (PREDICTED: WSC domain-containing protein 2-like [Saccoglossus kowalevskii])

HSP 1 Score: 69.7 bits (169), Expect = 2.400e-8
Identity = 41/119 (34.45%), Postives = 59/119 (49.58%), Query Frame = 0
Query:  263 LHEDEKALPPI-LYSFPGSGNTWTRLLIDFSTGIYTGTIFAKPKNKPEKTKLPGQGYCNHMVSAIKAHPNQISPEELFTVPPSDPRIGRCNSLGNITSFDRFILLTRNPFDAIWSEYRR 381
            LH   K LP + L SFPGSGNTW R L+  +TGIYTG+I+     K E     G+G+ ++ V  +K H                           ++ + + +L+ R+PFDAI SE+ R
Sbjct:   91 LHFSNKPLPLVALASFPGSGNTWVRHLLQQATGIYTGSIYNDKSLKRE--GFDGEGFTDNSVIVVKTHEWDNH---------------------TLSKYQKAVLIVRDPFDAIRSEFNR 186          
The following BLAST results are available for this feature:
BLAST of NO19G00240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 17
Match NameE-valueIdentityDescription
EWM25571.13.100e-4857.14wsc domain containing 1 [Nannochloropsis gaditana][more]
EWM24512.12.500e-2645.63isoform b [Nannochloropsis gaditana][more]
XP_005759647.13.000e-1939.23Hypothetical protein EMIHUDRAFT_198564 [Emiliania ... [more]
XP_001742512.11.400e-1340.00hypothetical protein [Monosiga brevicollis MX1] >E... [more]
XP_005757047.11.200e-1249.33hypothetical protein EMIHUDRAFT_259515 [Emiliania ... [more]
XP_004991370.16.000e-1237.80hypothetical protein PTSG_07574 [Salpingoeca roset... [more]
ELU11434.18.700e-1134.03hypothetical protein CAPTEDRAFT_193836 [Capitella ... [more]
XP_004993560.18.200e-932.03hypothetical protein PTSG_05694 [Salpingoeca roset... [more]
ELU11425.18.200e-938.26hypothetical protein CAPTEDRAFT_193827 [Capitella ... [more]
XP_002735861.22.400e-834.45PREDICTED: WSC domain-containing protein 2-like [S... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00240.1NO19G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO19G00240.2NO19G00240.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569255gene_9765Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00240.1NO19G00240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO19G00240.2NO19G00240.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00240 ID=NO19G00240|Name=NO19G00240|organism=Nannochloropsis oceanica|type=gene|length=2811bp
CAGGTATATTAAAGTCTCTCACTAGTAACCTGTCGAAGGCGAGGAAAGGC
CATGGGCGTTAGACCCGCTCGCAAGCCCAACAAACTGGGCAAAATGCCCA
TTCGCATTGCTATAGGGACGGCCGCCTTTTGTGCTGGCCTCGCATTGTTG
CACAGGCTCTGGTTGCCACCCACTCTAAAGCAAGGGGGCCTTCAAGCTTC
TAGCACTGTCGTTGTCACAACTAATGATGGTTTGCCTTCTCCTTCGTCTT
CAATCCAGATGGATTCCCCAGGCACCTTCTCATCCTCGTCTTCTTCGGGT
GTAGTACAGGAAGAAATGGTCGACAGCCTTGGGGACCATAGTGGTGACGT
CGTGATCAAGACGTTATCATCAGATTTATTGATTGATCAGAGGGGTCAAA
AGCACGTGAAGGACGAGGAGTTGCATAAGAAAGACGAGCAGGACAAAGAG
ATTGATGAGGCAGAGAAAGAGAAAGATGGAAGCCAGAAAGAAGACAAAGA
GGACGAAGACGAGCTGCGACGATTCGAAGAAGAAAATAACAAGAGACTGA
TGAATGGAGTCTGGAAAGAAGGTGAAGAGGAAGATGATGATGATTATGAT
GATGACTTCTTATCCGGAGAATGGGAAGACGCTAAGGAGGAAGACGATGA
CGAGAAGGACGAAGAGGAGGAGGACACTGATGACTGGGATAAAGAAAAGG
AGGTGGATAATACTGTGAAAGGAGATATCGCATCTGCTTCAAATTTTGTC
ACGGAAGCAAGCATCGTTGAAGAGGAGAAGGAAAAGGCCATCCTTTCACT
GGCCGAATGTCGGACGAACTATGGGGAGCGACGATTTCTACACGAGGATG
AGAAGGCTCTGCCACCTATTCTCTACAGCTTTCCAGgtgagtgagtgtcc
agacctattcggcagttttctcgttcattcatcgtttttgcatccatatc
gacagGGAGTGGAAACACTTGGACTCGTCTTCTCATTGATTTCAGCACTG
GGATTTATACTGGTACGATCTTCGCCAAGCCGAAAAATAAGCCCGAAAAA
ACTAAGCTGCCAGGACAAGGCTACTGTAATCATATGgtaattaaaaggag
tacatgcagttacttaccatttcatttattccttgtaggtcttttcccta
aatttgtatgatttaaactaatctacctttgatgtgtctttttgtcaatg
cagGTCAGCGCCATCAAGGCCCATCCTAATCAGATCAGTCCCGAAGAACT
TTTCACTGTGCCTCCTTCGGATCCACGCATAGgtaagtgagcggggccta
caacaattatgaggcaaaatgaagacttgggggcgaaagcagcggtaacg
gtggagaatgagggtatcaccagagtccgttaaaaaatttgctgcaccgg
tttggggaccacataaacttgtgttagcttcaagacggaatcatcgagaa
gtacaagacccgtcaattgttttcccctgacatttcatggacgctaacga
ttgcaaaattgctcatctaatttaatagGTCGGTGTAACAGTCTAGGCAA
CATTACGTCATTTGATCGATTCATTTTGCTGACTCGCAATCCATTCGACG
CTATTTGGAGCGAGTACCGAAGAACTGCTAACGACGTACACTATATTCTT
CGTGACGATTTCGATTCGAGTCAATTTGCCCATACTGTAGTCTCAAAATC
GTCAAgtaagtaaaagattgcacgcctgaccctgcccatgtgcccctttg
catgcttggtagaatacaactagtacttctccattaaatgcatacatact
accacttatccagACGAATACAGAGATATGGTACTCTCATTCAGAAAGAT
TCGAAGGAAATTTCCAAAGGGCATCTTTCGCATTCAATATGAGGAAATGC
TGGACCCAGATATGCGCCTGAGCATCTTGTCGAGATTGGTGAAGTTCATA
Ggtaagtaaaatatgatatgtgttggtacatgtcacgattagtttgcctt
ataagttacatactttccattctatggagtcacatcgactttccaagacc
gacttctaaaacgatctaaagcgcaccatagctgcttcgtctcatatgtt
gtcgtctccatcgtcacacccagGAATAAATAAGAATGAAAAAGCGGAGA
AAATGCGGCAGCGTCTACAGTGCGCTTTCGTACTTGCCGAAGAGGAGGGC
GGCGGTCGCCGTGCCGATAGAGTTGAGCAAAAGGTTGATGTAGACCAAAT
CGTTACACTAAACGAGGCATATCCACCAAAGGTCGCTTGCCGAATGTGGG
ATATCTTCGGCGCTGAGGCCAAAACTCTCGGATACACTTTACCAAATGGA
ATCATGGAAGAGGAATGTGAAAAGATGTAAGCAGATCATGAAGTCATGTA
GGCTTCTCGATATGCCACGAACCCTGTCTGTGACTAGAAATCCACAAATT
CTCTTCTCTTCAAGATTATAATAATAGATTATAATAATATCCTAAACTAT
TATTACAAGTATCTGCTCGATCAAGTTAGGTATCATAAATAATGGTATAC
GTAAGGCTGATTATTTTGAAAAATCACTCTAAATATAAAAAATTTGGGAT
CTGCGAAGGACCCTCGACGGTCGCCTTTTGTCACGCCCACAGAGAAATGT
AAAGAAATACAGCTCAAATTAAATGTGATCCTCTTTCAGGCTTAATTTTA
AAAAGGTTTAAATTGAGCGGGCTTAATTTGGTGCTTACATTAAGATATAA
GTAGATGCCATCATGTCGGTGGCAAGGCTCGTAATGGTCATTAAACCCCA
AAAAAAGTTAA
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protein sequence of NO19G00240.1

>NO19G00240.1-protein ID=NO19G00240.1-protein|Name=NO19G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MGVRPARKPNKLGKMPIRIAIGTAAFCAGLALLHRLWLPPTLKQGGLQAS
STVVVTTNDGLPSPSSSIQMDSPGTFSSSSSSGVVQEEMVDSLGDHSGDV
VIKTLSSDLLIDQRGQKHVKDEELHKKDEQDKEIDEAEKEKDGSQKEDKE
DEDELRRFEEENNKRLMNGVWKEGEEEDDDDYDDDFLSGEWEDAKEEDDD
EKDEEEEDTDDWDKEKEVDNTVKGDIASASNFVTEASIVEEEKEKAILSL
AECRTNYGERRFLHEDEKALPPILYSFPGSGNTWTRLLIDFSTGIYTGTI
FAKPKNKPEKTKLPGQGYCNHMVSAIKAHPNQISPEELFTVPPSDPRIGR
CNSLGNITSFDRFILLTRNPFDAIWSEYRRTANDVHYILRDDFDSSQFAH
TVVSKSSNEYRDMVLSFRKIRRKFPKGIFRIQYEEMLDPDMRLSILSRLV
KFIGINKNEKAEKMRQRLQCAFVLAEEEGGGRRADRVEQKVDVDQIVTLN
EAYPPKVACRMWDIFGAEAKTLGYTLPNGIMEEECEKM*
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protein sequence of NO19G00240.2

>NO19G00240.2-protein ID=NO19G00240.2-protein|Name=NO19G00240.2|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MGVRPARKPNKLGKMPIRIAIGTAAFCAGLALLHRLWLPPTLKQGGLQAS
STVVVTTNDGLPSPSSSIQMDSPGTFSSSSSSGVVQEEMVDSLGDHSGDV
VIKTLSSDLLIDQRGQKHVKDEELHKKDEQDKEIDEAEKEKDGSQKEDKE
DEDELRRFEEENNKRLMNGVWKEGEEEDDDDYDDDFLSGEWEDAKEEDDD
EKDEEEEDTDDWDKEKEVDNTVKGDIASASNFVTEASIVEEEKEKAILSL
AECRTNYGERRFLHEDEKALPPILYSFPGSGNTWTRLLIDFSTGIYTGTI
FAKPKNKPEKTKLPGQGYCNHMVSAIKAHPNQISPEELFTVPPSDPRIGR
CNSLGNITSFDRFILLTRNPFDAIWSEYRRTANDVHYILRDDFDSSQFAH
TVVSKSSSK*
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Synonyms
Publications