NO19G00130, NO19G00130 (gene) Nannochloropsis oceanica

Overview
NameNO19G00130
Unique NameNO19G00130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3791
Alignment locationchr19:40544..44334 +

Link to JBrowse

Properties
Property NameValue
DescriptionHistidine phosphatase superfamily, clade-2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:40544..44334 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029033His_PPase_superfam
IPR000560His_Pase_superF_clade-2
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO19G00130 vs. NCBI_GenBank
Match: EWM23488.1 (Histidine phosphatase superfamily, clade-2 [Nannochloropsis gaditana])

HSP 1 Score: 403.3 bits (1035), Expect = 1.500e-108
Identity = 263/634 (41.48%), Postives = 319/634 (50.32%), Query Frame = 0 
Query:   51 LASLLLVLLTYYFLFHPQSLPSPVSPPSATLGRRGGLTGAGTKRPYTPLADILEDAWLAHHQPPLSQSSAHVPSGPAGPPSNHTYRLSYVGMLARHGARYPTTRKLKLARAAVEFVCALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWCRRMLTALEGVQGGGLNRYGEWEQRELGREIAETYFLPSHS--------SPTASYPSSSSFFDSSSSCEPAISVKVTAKIRTKQSCQAFWTGVHQVLSPSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPEWCDREEVEDEALLRPYASCPRVRQHRKDVLQGLQDPRIIEAARLALLHNLGLSSLPPFPHPADDLVLGVYYACQAELTLF---PPSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVLDALEMAEDMENYHTRGFGSPSSRQVIAPLLHHXXXXXXXXXXXXXXXXXXXXXXXXXXKRGVGREGR--VQVDLFFAHDSTVLPLVALLDLVRLGPHPQGAARLCPFSSRLVVEHWERVMAAEE----------------GEEKKGQKGGGERKVEYGEREGWGADCIVLRYNGLVVRTLKGGLAEWKRVYAEALALRREDVCHIPPS 656
            + ++L  +L +  LF   S   P  PP    GRRGGLTGAGTKRPYT L D++ED+WLAHH  PL+ SS  +    +G   N T+RLSYVG+LARHGARYPT RKLKL++AA +++C +                                  WC  ML +L+GVQGGGLN +GEWEQRE GREIA+TYF PS S                              +SV VTAK RTKQSC+AFW GV++ +SPS                                                     CD  E E E LLRPY +C RV++HRK V+ GL DPR I+AAR ALL NL   SLP    P+DD+VLGV+YACQA  TL    P S                                 L+ALE  ED ENY TRGFG  SS++V+AP L H                          KRG G E +  + +DLFFAHDSTVLP+VALLDLVRLGPHP GAARLCPFSSRL VE WER   +EE                                        +D IVLRYNGL+++T++GGLAEWK VYA+AL +R E+VC++P S
Sbjct:   17 ILAVLSTVLVFVLLF---STYQPSRPPG--YGRRGGLTGAGTKRPYTLLLDVIEDSWLAHHNGPLNTSSDVLRPSSSG---NGTFRLSYVGVLARHGARYPTARKLKLSKAAAKWICDI------------------TDGQHSQEGRWKEAQDWCTWMLASLDGVQGGGLNSFGEWEQREFGREIAKTYF-PSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVSVTAKARTKQSCRAFWDGVYETVSPSSFDAQQVPPPSSADAPISAGL--------------------------------CDAAEAEAEGLLRPYTTCLRVQRHRKAVVDGLYDPRTIKAARRALLENLDHPSLPHSSVPSDDIVLGVFYACQAAFTLVDPSPSSQEQTPPDQPFPPPSRPDLACSLLSSSSFPLPSPLEALEATEDTENYQTRGFGPASSKEVMAPFLRH--------------------LTQRMEKRGGGAEAQRPLMIDLFFAHDSTVLPVVALLDLVRLGPHPHGAARLCPFSSRLTVERWER--TSEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDRIVLRYNGLLLKTIEGGLAEWKEVYADALLVRHEEVCNVPAS 569
The following BLAST results are available for this feature:
BLAST of NO19G00130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23488.11.500e-10841.48Histidine phosphatase superfamily, clade-2 [Nannoc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL015nonsL015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007696NSK007696Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00130.1NO19G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100198g4gene6960Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00130.1NO19G00130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00130 ID=NO19G00130|Name=NO19G00130|organism=Nannochloropsis oceanica|type=gene|length=3791bp
TTAAACCTCCCTGTCAAACTTGATCGCTACTGTCGTACTTATGGAACTGC
GCCGGTATGTCTGTTGATATTGACAACCTTCCTTCTTTACTTGTCCTCCC
TGCTGGGCGCTTTTCTACCTTGGCGGCATTGCTCTTCGACGACTTTCCTC
CCTGTATGCAGGCCGCCATCGACTGTACTTGGCGCCTTCCTTACTTCCTT
AATATGCCGCCACACTCTTGTCATCGGAAGATCTGTGTACGTCTTTCAAG
CGAGGCTTTTATGTGTCCTCCACGTACTTAGCGTTCCTTGTGTGGGGAGC
GAGCGTGGAAGATCAATATGCCCCGGGATGAAATACGTAATGCAACACGA
AGCTGCACTGCACTTAGGAAAATCATTGAGTGCCTGTGTCTGACGATCGA
GCACGATATATTTAGAGTAAATGTGGGTGGGGAAATAAAGCGAGGAAAAG
GCGCACAAATGTACTTAACAGTAGCATGGGCCAAAATCATGCATGTTCCC
ACCATACAGACCAGTACAAGTTACAGGTGACTAGTACAGGACTCACAGCG
ATGCAATGATGAGAGGTGTATGTGTGTCTGGGGGGACCTGATGGTGCTGT
CTCGTCTAGCTTACATTCTATGAAGTATAACCGTCTTCCGACCCTATCCC
TTTACCACAGCAAGCCATACAGGACACGCATGCCTCTATCACCACGACCG
TCACGAGCCCCACAGTCACCACCAATACCGCGGTGTCCACCGCTGTCCCC
GCCGTCCAAGCTCCACCTGCTCGCTTCCCTCCTACTCGTCCTCTTGACCT
ACTACTTCCTCTTCCATCCCCAATCCCTTCCGAGTCCGGTTTCCCCTCCC
TCGGCCACCCTCGGCCGCCGAGGCGGATTGACAGGGGCCGGCACCAAACG
TCCGTACACCCCACTCGCTGATATTCTTGAAGATGCCTGGCTCGCACACC
ACCAGCCTCCCCTCTCCCAGTCCTCCGCCCACGTGCCATCAGGACCAGCG
GGGCCACCCTCCAACCATACCTATCGATTGTCGTACGTGGGGATGCTGGC
ACGACACGGCGCCCGGTATCCCACTACCCGCAAGCTTAAGCTTGCTAGGG
CTGCTGTTGAGTTTGTGTGTGCCTTGCCTTCCTCCTCGTCCTCTAGTGAA
AAGATGAAGGAGGAAGCAGGCGAAGAGGTAGTAATGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGAAAGCACAGGAGTGGTGCCGTCGGATGTTGACGG
CCTTAGAGGGTGTGCAAGGAGGAGGTTTGAATCGCTACGGAGAGTGGGAG
CAAAGGGAGTTGGGAAGGGAAATAGCAGAGACGTACTTTCTGCCCTCTCA
CTCTTCCCCAACTGCATCATATCCATCCTCCTCTTCATTCTTTGACTCCT
CCTCTTCCTGCGAGCCGGCCATTTCAGTCAAAGTAACGGCTAAAATACGC
ACCAAGCAAAGTTGTCAGGCGTTCTGGACAGGAGTCCACCAAGTCCTCTC
TCCTTCCTTGCCAGCACCATCTTCCCCCTCCTCATTCTCTTCCTTCTCCT
CCTCCCCCACCTTCTCCTCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TCTATATCCGGAGTGGTGCGACCGAGAGGAAGTGGAGGACGAGGCCCTTC
TCCGGCCTTACGCCTCCTGTCCCCGCGTACGGCAGCACCGCAAGGATGTA
CTACAGGGGCTGCAAGACCCAAGgtccgtgtcctgtacctctctctccac
ctcccttctcgactccatccttccatcttttcccgcatctttgtgggaca
aaagcaccacaagcaaattgttggaacctcccctccttcccctcttcctc
cctccttccctctcttcattctgtgtctctaatcttcatcctcgatatcc
ttccctcgcaccagGATCATTGAAGCCGCTCGCCTCGCTCTCCTCCACAA
CTTAGGCCTGTCCTCCCTCCCTCCCTTCCCCCATCCCGCCGACGACCTCG
TCCTCGGCGTTTACTATGCCTGCCAGGCCGAACTCACCCTCTTCCCTCCC
TCCAACCCTCCCTCCCACCCTTCTCCCCGCCCCTCCTCCTTTGCATGCGC
CCTCCTCTCCCCTCCCCCCTCCTCCTGCCCCTCCTCCTCTCCGTCCTACG
TTCTGGACGCCCTGGAAATGGCGGAGGACATGGAGAACTACCACACACGG
GGCTTCGGGTCTCCATCGTCCAGGCAGGTCATAGCTCCTCTCCTCCACCA
CCTCACCCGCCGCATGCAGCAGCAGCAGCAGCTACAGAAGGAGGAGGATA
AGGAGGATAAGGAGGAAGGGAGGGGAAAAAAAAGAGGAGTAGGGAGGGAG
GGAAGAGTGCAGGTGGACTTGTTCTTTGCGCACGACAGCACGGTCTTGCC
GTTGGTAGCGTTGCTTGACTTGGTTCGGgtaggtggtgagggagggtggg
agggaaggaggaagggagaggaagggaagagggaggatcgtgtgtatttg
ctgttggattttgcttcgggtatttggaaggaggtcgagggagggagaga
cagcgggagggaggcaatcaggggagcgcgagagggaaaggagggggagg
aagagttgagtctttttctccacttagtcatggagtttctttaatttttt
ttaatgtcgttcacgttctatttcttattctatcctttatttctacgtag
CTAGGGCCACACCCGCAGGGAGCGGCGCGTCTTTGTCCCTTCTCCTCGCG
CTTGGTGGTGGAGCACTGGGAGCGCGTGATGGCCGCGGAGGAGGGAGAGG
AGAAGAAGGGGCAGAAGGGAGGCGGAGAGAGGAAAGTGGAATATGGAGAG
AGGGAGGGGTGGGGAGCGGACTGCATTGTGTTGCGGTACAACGGCCTGGT
TGTGAGGACCTTGAAAGGGGGACTGGCGGAATGGAAGAGAGTTTATGCCG
AGGCGCTGGCCCTAAGgtacgtgagttgtattttggggcgtttcgatcag
agggtgagctttaaaagccctcctttgctattcttattttttgtgacacc
tgatttaccccttgagagactggagtgcgactcaccgatcctctcatact
tcccctcccaatctaccctcgagcatttcctcgtccacaatctcattgcc
ctccacaatcccattcaaaaacggctcctccgcctccctatctagACGAG
AAGACGTTTGTCACATCCCTCCTTCATTGTCGTCTTCGCCTCTTTTACCG
CGATAGAAGACTTGTAAAATAATCACCACGGCTGCGGACGAGGACAGCAG
CAGCTCTCGCCGAAAGCGTGGCGGCAAGGAAGAAGTGAAGGAGAAGGGCA
AGGGGGAAGCGAGCCACAAGCATGCTCTGTCGCGACGACTCGTGTGTACA
CATAAAGCACTTGAATGTATCCCTGTACTCTGCATCCTTCACCAGTATGT
CAGCTACAGTAAATGAAGCAAATAAGTTCAGTAAAAATGTAGACATTTGC
TTGCCGATCACACCGCCAATTTGATGACGGAGCTCTCCATCTTCTTCATC
CATCTTGGGCCAGATCGTCGTTGGGTCTCTGTTTCGGGGGTTTCTGCCTT
TCGCAACATGCATGTTATCCTCCTGCTCCAAGCACCACTACCCACATGTC
TTATATCATCCACGCGCTTTTTCCTTCGCCACACTTCCTGTCTCGCTGCG
ATCTCAGTAACTAAAGATTTACCGTATTTGGTCCATGAAGC
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protein sequence of NO19G00130.1

>NO19G00130.1-protein ID=NO19G00130.1-protein|Name=NO19G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MKYNRLPTLSLYHSKPYRTRMPLSPRPSRAPQSPPIPRCPPLSPPSKLHL
LASLLLVLLTYYFLFHPQSLPSPVSPPSATLGRRGGLTGAGTKRPYTPLA
DILEDAWLAHHQPPLSQSSAHVPSGPAGPPSNHTYRLSYVGMLARHGARY
PTTRKLKLARAAVEFVCALPSSSSSSEKMKEEAGEEVVMQQQQQQQQQQK
AQEWCRRMLTALEGVQGGGLNRYGEWEQRELGREIAETYFLPSHSSPTAS
YPSSSSFFDSSSSCEPAISVKVTAKIRTKQSCQAFWTGVHQVLSPSLPAP
SSPSSFSSFSSSPTFSSFSSSSSSSSSSSSSSSSSSSSSSSSSSLYPEWC
DREEVEDEALLRPYASCPRVRQHRKDVLQGLQDPRIIEAARLALLHNLGL
SSLPPFPHPADDLVLGVYYACQAELTLFPPSNPPSHPSPRPSSFACALLS
PPPSSCPSSSPSYVLDALEMAEDMENYHTRGFGSPSSRQVIAPLLHHLTR
RMQQQQQLQKEEDKEDKEEGRGKKRGVGREGRVQVDLFFAHDSTVLPLVA
LLDLVRLGPHPQGAARLCPFSSRLVVEHWERVMAAEEGEEKKGQKGGGER
KVEYGEREGWGADCIVLRYNGLVVRTLKGGLAEWKRVYAEALALRREDVC
HIPPSLSSSPLLPR*
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Synonyms
Publications