NO19G00120, NO19G00120 (gene) Nannochloropsis oceanica

Overview
NameNO19G00120
Unique NameNO19G00120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1780
Alignment locationchr19:30810..32589 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:30810..32589 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO19G00120 vs. NCBI_GenBank
Match: EWM23494.1 (hypothetical protein Naga_100198g11 [Nannochloropsis gaditana])

HSP 1 Score: 276.6 bits (706), Expect = 8.000e-71
Identity = 141/257 (54.86%), Postives = 190/257 (73.93%), Query Frame = 0
Query:    3 RSMATRGILMLLVAC--VCGSVQGQLSARKKIASGSSKAGVA----EAWDQMGEQVKANAEAVKAAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKSKAFEKILENVEVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGMQNMWNMMKTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASIMELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAKVLR 254
            RSMAT   L LL +C   C   QGQ  +  K  + + K G+     E  DQ GE+ K   E VK+++ GL DPVGS  K AFFQ VKK  G+D++ELF+T+ KSKAFE ILENVE+QHR++E +PILGA+ GF E +GRRL+D+ET AGF KG++N+  M KT A+HA +PTLMN ++ ELSKSDDPEI  LFK A ENDEAS++EL+N+ A DLYPGVD+ +++D++++ +FDK+L  PE++RF+DQDPY+++V R
Sbjct:   53 RSMATLRFLALLFSCFYFCVRCQGQRFSDLKNMAANQKGGIVTVGNEFKDQAGEKFKERTEEVKSSLQGLFDPVGSPGKSAFFQKVKK-DGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHALNPTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYISRVFR 308          
BLAST of NO19G00120 vs. NCBI_GenBank
Match: XP_005854240.1 (hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526] >EKU22120.1 hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 156.0 bits (393), Expect = 1.600e-34
Identity = 87/166 (52.41%), Postives = 113/166 (68.07%), Query Frame = 0
Query:    5 MATRGILMLLVAC--VCGSVQGQLSARKKIASGSSKAGVA----EAWDQMGEQVKANAEAVKAAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKSKAFEKILENVEVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGMQNMWNMMKTVAEHA 165
            MAT   L LL +C   C   QGQ  +  K  + + K G+     E  DQ GE+ K   E VK+++ GL DPVGS  K AFFQ VKK  G+D++ELF+T+ KSKAFE ILENVE+QHR++E +PILGA+ GF E +GRRL+D+ET AGF KG++N+  M KT A+HA
Sbjct:    1 MATLRFLALLFSCFYFCVRCQGQRFSDLKNMAANQKGGIVTVGNEFKDQAGEKFKERTEEVKSSLQGLFDPVGSPGKSAFFQKVKK-DGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREARGRRLTDQETTAGFSKGVRNLLEMFKTSAKHA 165          
BLAST of NO19G00120 vs. NCBI_GenBank
Match: EWM25436.1 (hypothetical protein Naga_100005g87 [Nannochloropsis gaditana])

HSP 1 Score: 149.1 bits (375), Expect = 1.900e-32
Identity = 75/196 (38.27%), Postives = 122/196 (62.24%), Query Frame = 0
Query:   59 VKAAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKSKAFEKILENVEVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGMQNMWNMMKTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASIMELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAKVLRT 255
            ++ A  G   P+    K+AF Q + K G VD +ELF   +KSKAF+ +L+NVE+QHR+++E+P+L A  GF ++ GRRLS  ET  GF  G+QN+ +  K      KDP      + +++   +P I +LF+ A E D A++ ELQ++     +PGVD+ V+R++    +F+K+LS PE+ RF+D++ + +   R+
Sbjct:  106 LQQAASGFDQPLRPNDKVAFLQKIAK-GNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQITGRRLSARETMEGFAIGVQNVIDFAKVAFIKVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFIDRNEFASNFFRS 300          
BLAST of NO19G00120 vs. NCBI_GenBank
Match: EWM24107.1 (hypothetical protein Naga_100286g4 [Nannochloropsis gaditana])

HSP 1 Score: 107.1 bits (266), Expect = 8.400e-20
Identity = 61/195 (31.28%), Postives = 97/195 (49.74%), Query Frame = 0
Query:   58 AVKAAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKSKAFEKILENVEVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGMQNMWNMMKTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASIMELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAKVL 253
            A K  M   L      ++L   Q   K  G+D ++LF+T   S   + IL++VE QH++ME +P+L A  GF E+ GRRL D  T AGF  G+ ++   +  + +  KDP++    L EL   D   I   F AA   D  ++  +   +   LYPGV+  V++ +  +    K+    E+ R ++ DP +   L
Sbjct:   39 AAKDVMEDTLPAYKPDAELTMMQDTWK-NGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAAL 232          
BLAST of NO19G00120 vs. NCBI_GenBank
Match: XP_005853961.1 (hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526] >EKU22395.1 hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 106.7 bits (265), Expect = 1.100e-19
Identity = 61/195 (31.28%), Postives = 96/195 (49.23%), Query Frame = 0
Query:   58 AVKAAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKSKAFEKILENVEVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGMQNMWNMMKTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASIMELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAKVL 253
            A K  M   L       +L   Q   K  G+D ++LF+T   S   + IL++VE QH++ME +P+L A  GF E+ GRRL D  T AGF  G+ ++   +  + +  KDP++    L EL   D   I   F AA   D  ++  +   +   LYPGV+  V++ +  +    K+    E+ R ++ DP +   L
Sbjct:   39 AAKDVMEDTLPAYKPDGELTMMQDTWK-NGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEITGRRLDDAGTTAGFTAGLNSILKTLPDMLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDPIVTAAL 232          
BLAST of NO19G00120 vs. NCBI_GenBank
Match: EWM22205.1 (hypothetical protein Naga_100291g6 [Nannochloropsis gaditana])

HSP 1 Score: 103.6 bits (257), Expect = 9.300e-19
Identity = 55/162 (33.95%), Postives = 90/162 (55.56%), Query Frame = 0
Query:   91 IELFDTVIKSKAFEKILENVEVQHRLMEEIPILGAIPGFLEVK-GRRLSDEETKAGFRKGMQNMWNMM-KTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASIMELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAK 251
            +++F   + +K F+ IL+N ++QHR++++ P+LGA+ GF  +K  RRLS EETK  F  GM  + N+          +P  ++  L +++ S DP I  LFK A   ++ ++ ELQ+      Y G+D    R+I    + DK    PE+  F+ +D  LAK
Sbjct:   89 VQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKDASLAK 250          
BLAST of NO19G00120 vs. NCBI_GenBank
Match: XP_005854196.1 (hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526] >EKU22160.1 hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 88.2 bits (217), Expect = 4.000e-14
Identity = 55/192 (28.65%), Postives = 90/192 (46.88%), Query Frame = 0
Query:   91 IELFDTVIKSKAFEKILENVEVQHRLMEEIPILGAIPGFLEVK-GRRLSDEE------------------------------TKAGFRKGMQNMWNMM-KTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASIMELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAK 251
            +++F   + +K F+ IL+N ++QHR++++ P+LGA+ GF  +K  RRLS EE                              TK  F  GM  + N+          +P  ++  L +++ S DP I  LFK A   ++ ++ ELQ+      Y G+D    R+I    + DK    PE+  F+ +D  LAK
Sbjct:   89 VQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEEVRWQIRGKRRRKREGNLIYGRGNDETLNAQTKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREITKQHNGDKFKQMPEMMHFIQKDASLAK 280          
The following BLAST results are available for this feature:
BLAST of NO19G00120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM23494.18.000e-7154.86hypothetical protein Naga_100198g11 [Nannochlorops... [more]
XP_005854240.11.600e-3452.41hypothetical protein NGA_0024302 [Nannochloropsis ... [more]
EWM25436.11.900e-3238.27hypothetical protein Naga_100005g87 [Nannochlorops... [more]
EWM24107.18.400e-2031.28hypothetical protein Naga_100286g4 [Nannochloropsi... [more]
XP_005853961.11.100e-1931.28hypothetical protein NGA_0461700 [Nannochloropsis ... [more]
EWM22205.19.300e-1933.95hypothetical protein Naga_100291g6 [Nannochloropsi... [more]
XP_005854196.14.000e-1428.65hypothetical protein NGA_0186800 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL015nonsL015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL014nonsL014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR075ncniR075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00120.1NO19G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00120.1NO19G00120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00120 ID=NO19G00120|Name=NO19G00120|organism=Nannochloropsis oceanica|type=gene|length=1780bp
CAGATCAATCTATAAATCATGCGAAGGTCAATGGCGACCCGGGGCATCCT
GATGCTCCTGGTGGCTTGCGTGTGCGGCAGCGTCCAAGGCCAGCTTTCGG
CGCGTAAGAAGATAGCATCAGGCTCCAGCAAGGCAGGCGTGGCCGAGGCG
TGGGACCAGATGGGGGAGCAGGTCAAGGCCAACGCGGAGGCAGTCAAGGC
AGCCATGCCAGGCCgtaagtagaacgaagaagtgggagaaggttgagaca
ttgatgcctgcacgcgcacacccatctacaacattttcgtttcccctaca
cttttccttttctatcgctctctccagTCTTGGATCCCGTGGGCTCGACG
AGCAAGCTGGCCTTTTTCCAGGCCGTGAAGAAGGCTGGCGGCGTGGACGC
CATCGAGTTATTCGACACTGTCATCAAGAGCAAGGCCTTTGAGgtaggca
caatctcaatgtgtgtctctgtgtatgtgtatgtgtatgtctacgtgtgt
gtgcgtgtagggtgtgtgatactctctaattccttgcatttctctctctt
acacgtccctcactttccctccttccttatcttctttccgcccttcttcc
taacaccagAAAATCCTGGAGAACGTGGAGGTGCAGCACCGGTTGATGGA
GGAAATTCCCATCCTCGGAGCCATTCCAGGCTTTCTGGAGGTGAAGGGCC
GACGCCTCAGCGACGAGGAGgtgcggtgcagcgggaaggaggggaggggg
tgagggaggaatttcgttggttgagcgtatttcctttacaatcataatca
tcgaccttgcgctttaccacctcctcctctatattcagACCAAGGCCGGG
TTTAGGAAGGGCATGCAAAACATGTGGAACATGATGAAGACTGTGGCCGA
ACACGCCAAGgtaagccttccttccgccctccctccttccctgtctttcc
ctttctcatccgccctcctgcttcccctatttttgattccagGACCCCAC
ACTCATGAACACAAAGCTGGTGGAACTCTCAAAGTCCGATGACCCTGAGA
TTTTGgtaaggagacgagggaaaagacggaagagaagaagggcgcttcct
ctccatccacaaccaccgactacctctcttcagtctctgtccctcacgta
tttccctcgccaccttttcttttcccttattctgctctccagGCGCTATT
CAAGGCAGCGGGTGAGAACGACGAGGCCTCGATAATGGAGCTGCAGAACA
TGGTGGCCGCCGACCTTTACCCCGgtacgaggcaatgaaggagagaggga
gggaaggagggatggagggagggagggacagcaaagaagcgacgccaaag
agtcacgtcactcactttatgctattactcttatctatgcatagGCGTGG
ACGTGTCTGTCATGCGTGACATCCTGGACGCACAGAGCTTCGACAAGATC
TTGTCCTTCCCCGAGCTCTCCCGCTTCGTCGACCAGGACCCCTACCTAGC
CAAGGTGCTGAGGACGCCCAAGTAAAGGCGTGTAGGCACGAAATAATATT
TTAATAAAGTATTCAAGAGAGGGAAATGGTAGGTTGAGAAAACTGTGATT
TCAAGGAGGGGATGAGGGAGGATAAAGCAAGAGGTAATAGGACAAGAAGC
TATGGCCGTCGACGAAGATGCAAAGTATATTATTGATTGCTTGCCAAAGA
GTGAATCTAAGAGAACTCTTTCGGGTGCCCAGATGTCGAACGAAGGATAA
AGAAGGAATTATGGCATCAAGTGTGCGGCT
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protein sequence of NO19G00120.1

>NO19G00120.1-protein ID=NO19G00120.1-protein|Name=NO19G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MRRSMATRGILMLLVACVCGSVQGQLSARKKIASGSSKAGVAEAWDQMGE
QVKANAEAVKAAMPGLLDPVGSTSKLAFFQAVKKAGGVDAIELFDTVIKS
KAFEKILENVEVQHRLMEEIPILGAIPGFLEVKGRRLSDEETKAGFRKGM
QNMWNMMKTVAEHAKDPTLMNTKLVELSKSDDPEILALFKAAGENDEASI
MELQNMVAADLYPGVDVSVMRDILDAQSFDKILSFPELSRFVDQDPYLAK
VLRTPK*
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Synonyms
Publications