NO19G00090, NO19G00090 (gene) Nannochloropsis oceanica

Overview
NameNO19G00090
Unique NameNO19G00090
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1729
Alignment locationchr19:19425..21153 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:19425..21153 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO19G00090 vs. NCBI_GenBank
Match: XP_005854241.1 (hypothetical protein NGA_0024902 [Nannochloropsis gaditana CCMP526] >EKU22121.1 hypothetical protein NGA_0024902 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 155.6 bits (392), Expect = 1.900e-34
Identity = 78/183 (42.62%), Postives = 112/183 (61.20%), Query Frame = 0 
Query:   26 QWVEGYPVPTNNQSDPSSPPFAQGVQLDDIVYQSFETKAKSHRAGDIIRLYTTFKLNRWPEGATSIYCAMRNYNGTATGGGSNFAIKNRREFFHKKK---YGTNYQIALSETDGKIVWDFQRAGEYLQVGHTWTLYAKVVMNKNVDINVNTWRAYCETKQDDPLKSWYYFKSWMELPVTPAGR 206
            +W+E      NNQ+ P+ PPF  GV ++DIVY++F TK K HRAG  I + T F  N WPEGATS+YCAMRNYN   T   + FA+ N+   +         +++ I+++    ++ W F ++G+ L VG T+ L  ++ +N++       WR+YCETKQ    KSWYYFKSWME+ + PA R
Sbjct:   32 KWME----EPNNQTVPTDPPFPAGVNVNDIVYRNFVTKPKVHRAGRTIVMRTKFSFNSWPEGATSMYCAMRNYN--TTSDLTTFAVINQDLSYETSGPLWRPSSFGISMAVQPDRVEWSFDQSGKDLVVGKTFNLLGRLRLNRHATAKQYVWRSYCETKQPPGRKSWYYFKSWMEVSMRPARR 208
The following BLAST results are available for this feature:
BLAST of NO19G00090 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854241.11.900e-3442.62hypothetical protein NGA_0024902 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL015nonsL015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL014nonsL014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR075ncniR075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR038ngnoR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007702NSK007702Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00090.3NO19G00090.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO19G00090.2NO19G00090.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO19G00090.1NO19G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00090.3NO19G00090.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO19G00090.2NO19G00090.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO19G00090.1NO19G00090.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00090 ID=NO19G00090|Name=NO19G00090|organism=Nannochloropsis oceanica|type=gene|length=1729bp
GTACAAGGAGGTTTTTGAAATATTATACAAAATAATAACGGTAACGTTGA
GATTGCCCGGCCCGGAGGCGCGTGCCTCCTGGTTCTCTCCCAAGATGTTG
AAAAAGCTAGAGAGCACACGCCCCCATCTACTTCTACTTGCTACGATGCA
CCTAAAAATTCCATGACGGCGCATACCCACAACGTACTCCTTATTCATTC
GTGATCCGCCAGCTATATTCAAGCCCCTTCTTGCCGTTGGAATGAGGCAG
ACACTACGTCGACCTCGACTTCCTTGTCCTCCTCCCCTATGTACGACATG
TATCCGCATATATGAACCGTGGATCCCTGCTCTGTACTACTGACGACCCA
ATCTTACAAATTTCCATCCAGAGTACTGCCGGGCCTCACGAGAAATCGCC
TACCCATCTACCATGCTTCGCCCCTCAATCCTCTCGGGCCTAGCGCTCCT
TGCGACTCTGCGGTCGGTATTGGTACGTATTTCCTCCCCCCCTTTCTTTT
CCTACCCGACTCACTCCTTGATTGCCCTCTGTCCACATCTAATTCCAAAG
GCACAAGGAAAACGCCAGTGGGTGGAGGGCTACCCTGTCCCAACCAACAA
CCAGAGCGATCCCTCCAGCCCCCCTTTCGCCCAGGGCGTCCAGCTTGACG
ATATCGTCTACCAATCTTTCGAGACCAAGGCCAAATCCCACCGGGCGGGC
GACATTATCCGGCTGTACACGACTTTCAAGCTCAATCGATGGCCCGAGGG
CGCCACCTCTATTTACTGCGCGgtacgtgtatctgtatgtgcatgccctg
tccctctcgtcgtcctttcactcgacttaatcttgatcacctaacttttc
atccccccgccctcagATGCGCAACTACAACGGTACCGCCACTGGGGGCG
GCTCCAACTTCGCCATCAAAAACCGCAGAGAATTCTTCCACAAGAAGAAG
TACGGGACAAACTACCAGATCGCCTTGTCCGAGACGGACGGCAAGATCGT
GTGGGATTTTCAAAGGGCGGGGGAGTACCTTCAGGTCGGCCACACTTGGA
CGCTCTACGCCAAGGTCGTGATGAACAAGAACGTGGACATTAACGTTAAT
ACCTGGCGAGCCTACTGCGAGACCAAGCAGGACGACCCCTTAAAAAGTTG
GTACTATTTCAAGAGCTGGATGGAAgtaagtaacttgcagatttctggct
cgcctcagacccgtacgcattagctctttctcttgcattcgcgagcggaa
atatgtctttctctcgtctcgtcccttgcatctaccttattcccaacctt
ccctccttttctcctgctctccattcctaccccctccccacatatttagT
TGCCTGTCACTCCGGCAGGCCGTGTAAAGAAGTCTACGGGCCCGGTCGGC
CCTGGCCAGAAGGCCTACAGGAAGTTTATCAGGAGGGAGAAGAGGATGAA
GGCCAAGAAGACCGGGGCCTCCAAAGAATAAAGTTAAGGCTCCCTGTTCG
GGAACTAACGAGAGGCTGTCCTCCTGGACATGTGCAATAGCCCGAAGATC
CAAAAAGGATACACTGCCAAAGTATTTCATGCGATGAGGATTGCTTGATG
TAAAGTAGGGAGAGGTTAGTAGGAGAGAAAGTTGGTGCTTTGTGCGTGTG
TGTCTGTATTGCATGCATGTGGATGAAGTAGGGGCCACATTACAAGAAGA
GAAGAAATAGAGAAAAAGGTCAGGAAATC
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protein sequence of NO19G00090.3

>NO19G00090.3-protein ID=NO19G00090.3-protein|Name=NO19G00090.3|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MLRPSILSGLALLATLRSVLVRISSPPFFSYPTHSLIALCPHLIPKAQGK
RQWVEGYPVPTNNQSDPSSPPFAQGVQLDDIVYQSFETKAKSHRAGDIIR
LYTTFKLNRWPEGATSIYCAMRNYNGTATGGGSNFAIKNRREFFHKKKYG
TNYQIALSETDGKIVWDFQRAGEYLQVGHTWTLYAKVVMNKNVDINVNTW
RAYCETKQDDPLKSWYYFKSWMELPVTPAGRVKKSTGPVGPGQKAYRKFI
RREKRMKAKKTGASKE*
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protein sequence of NO19G00090.2

>NO19G00090.2-protein ID=NO19G00090.2-protein|Name=NO19G00090.2|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MLRPSILSGLALLATLRSVLAQGKRQWVEGYPVPTNNQSDPSSPPFAQGV
QLDDIVYQSFETKAKSHRAGDIIRLYTTFKLNRWPEGATSIYCAMRNYNG
TATGGGSNFAIKNRREFFHKKKYGTNYQIALSETDGKIVWDFQRAGEYLQ
VGHTWTLYAKVVMNKNVDINVNTWRAYCETKQDDPLKSWYYFKSWMEVSN
LQISGSPQTRTH*
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protein sequence of NO19G00090.1

>NO19G00090.1-protein ID=NO19G00090.1-protein|Name=NO19G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MLRPSILSGLALLATLRSVLAQGKRQWVEGYPVPTNNQSDPSSPPFAQGV
QLDDIVYQSFETKAKSHRAGDIIRLYTTFKLNRWPEGATSIYCAMRNYNG
TATGGGSNFAIKNRREFFHKKKYGTNYQIALSETDGKIVWDFQRAGEYLQ
VGHTWTLYAKVVMNKNVDINVNTWRAYCETKQDDPLKSWYYFKSWMELPV
TPAGRVKKSTGPVGPGQKAYRKFIRREKRMKAKKTGASKE*
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Synonyms
Publications