NO19G00080, NO19G00080 (gene) Nannochloropsis oceanica

Overview
NameNO19G00080
Unique NameNO19G00080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1544
Alignment locationchr19:17432..18975 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:17432..18975 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO19G00080 vs. NCBI_GenBank
Match: EWM23486.1 (hypothetical protein Naga_100198g9 [Nannochloropsis gaditana])

HSP 1 Score: 347.1 bits (889), Expect = 9.100e-92
Identity = 202/467 (43.25%), Postives = 285/467 (61.03%), Query Frame = 0 
Query:   10 ISRLFLLLSIIIRAVTPCGAAE--------PLVEGLSISSSLVKVTSFMKKEVSQGDIAPLWFTVASFDDQPQHVNFQVLLPAASVTYREAAVFPPLDDDLAVLHVLEGEERDMVAVMWTGVALAPGQSRVFNVDVKIEAISEQAAVQLEAVVTRGSNLQSSVVLSTLPVTLTKRPKITKAFLEEKAVEKLRANPHKGRPNEHEHESFADCKPLRQGPAAVEDCLAACYQEESQPCLACGYDPWSGCLCKGKAKEDKDRYLDGV--PVLYEREETEEDVKEIKSEAAQLYRPLFLDRRGEILIFPGLFSEEQCLDMEGYLAELVAEHKTQRHIVPGVNDSPLHALVKRMLPIPEATFEEFVTFSEEDVEVDPHYDEVKNGETHKLLLFLDTVAGTRFWESKETYRKKNCPLVVGPARGTVVIFPMSLYHDSARYEPQYSIKRTLGLRMSLPPFDSLVEKSAIGHVQS 467
            +S L LL+S+++       A++        P +    ISS +   +S  +K++S+GDIAP WFTV +  ++ + ++F + LP  S  +  ++VFPP  +  A   V   +      V W G+ LAPGQS VFNVD ++ +ISE   + ++ +V    + +     S L +TLTKRPKIT+  L E+  ++   NP   R     H++F  C+ L+  PA VE CL  C Q E Q CL CG+D  +GC+C  K KE  DR ++ V     +E   T++ + ++             DRR EIL+FP L SEEQ   M+ YL++LV EH  QR I+   N S LH L++ +LP+    FE++VTFSEE+VEV PHYD +K GE+HKLLLFLD +AGTRFWES++ + + +CPLVV P+RGT+VIFPMSLYHDSAR+EP+ SIKRTLGLR+ LP FD + E   IG VQ+
Sbjct:   38 LSTLLLLVSMLLLKHRGDSASKEGLFSTRIPALVAHDISSEINISSSMNEKQISEGDIAPCWFTVHNAGERLKALDFNMHLPFNSTKFLGSSVFPP-QEKSAGQEVAYIDTDGAFVVRWKGLTLAPGQSLVFNVDFRVISISETGPINIQGLV-EVMDTEGIHDTSELTITLTKRPKITQKLLSEQRAKRFGTNP--VRSFSSGHQTFERCRRLQLIPAKVEKCLNIC-QNEGQSCLGCGFDQRTGCVC--KRKEGDDRLIESVFPQEAWEDRSTKDSMLDLSD-----------DRRCEILVFPSLLSEEQLSAMKSYLSDLVLEHSEQRMILETKNTSSLHDLIRDILPMSNVQFEDYVTFSEENVEVQPHYDAIKGGESHKLLLFLDEIAGTRFWESQDDFERNHCPLVVKPSRGTIVIFPMSLYHDSARFEPRNSIKRTLGLRVRLPFFD-MTEAGTIGLVQA 485
The following BLAST results are available for this feature:
BLAST of NO19G00080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23486.19.100e-9243.25hypothetical protein Naga_100198g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL015nonsL015Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL014nonsL014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR075ncniR075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR038ngnoR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007701NSK007701Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00080.1NO19G00080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100198g9gene6965Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00080.1NO19G00080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00080 ID=NO19G00080|Name=NO19G00080|organism=Nannochloropsis oceanica|type=gene|length=1544bp
AACCACAGGACATACATAATCATCATGTTTTACCCTCGATCATTACCTCC
AATAAGCCGGCTTTTTCTTTTGCTATCCATCATCATCCGAGCCGTCACCC
CATGTGGCGCCGCGGAGCCCCTTGTCGAAGGCTTGTCCATATCATCATCT
TTGGTCAAGGTCACGTCCTTTATGAAGAAAGAGGTGTCGCAAGGTGACAT
TGCTCCCCTTTGGTTCACGGTGGCTTCGTTTGACGACCAGCCACAGCACG
TCAACTTCCAAGTCCTCCTACCGGCTGCCAGTGTCACGTACCGCGAGGCC
GCCGTCTTTCCACCCCTGGACGATGATTTAGCAGTCTTGCATGTATTGGA
AGGCGAGGAAAGGGACATGGTTGCGGTGATGTGGACCGGTGTTGCCCTGG
CCCCAGGGCAATCCCGCGTCTTCAATGTAGACGTCAAGATCGAGGCCATC
TCAGAGCAGGCTGCCGTGCAGCTAGAGGCTGTGGTGACGCGCGGCAGCAA
CTTACAGAGTAGTGTGGTACTGAGTACTTTGCCAGTAACGCTGACCAAGA
GGCCCAAGATCACAAAGGCCTTCCTCGAGGAGAAAGCAGTGGAGAAGCTG
AGGGCCAATCCGCACAAAGGACGTCCGAATGAGCACGAGCATGAAAGTTT
TGCAGATTGCAAGCCTTTGCGCCAGGGCCCTGCAGCCGTTGAAGATTGTT
TGGCTGCTTGCTACCAGGAGGAATCGCAGCCGTGCCTGGCCTGTGGGTAC
GACCCGTGGAGCGGCTGCCTGTGTAAGGGAAAGGCGAAGGAGGACAAAGA
CCGTTACCTGGACGGCGTGCCTGTGCTCTATGAGAGGGAGGAGACGGAGG
AAGATGTGAAAGAAATAAAAAGTGAAGCAGCACAGTTATACCGACCACTT
TTTCTGGACCGGAGAGGTGAGATCTTGATCTTCCCCGGCCTCTTTTCCGA
GGAGCAATGCCTCGACATGGAGGGGTACCTGGCCGAGCTGGTGGCAGAGC
ACAAGACGCAGCGCCATATCGTGCCGGGTGTCAATGACAGCCCACTTCAT
GCCTTGGTGAAAAGAATGTTGCCGATACCGGAAGCAACTTTCGAGGAGTT
CGTGACTTTTTCGGAGGAGGATGTGGAGGTGGATCCGCACTATGATGAGG
TCAAGAACGGGGAGACCCACAAGCTTCTCCTTTTCCTGGATACGGTAGCG
GGAACGCGCTTCTGGGAAAGCAAAGAGACATACAGAAAAAAGAATTGCCC
GCTGGTAGTGGGGCCGGCTCGAGGTACGGTGGTTATATTTCCTATGTCGC
TTTATCACGACTCGGCTCGGTACGAGCCCCAGTATAGCATCAAACGCACG
CTGGGCCTGCGGATGTCTCTTCCACCATTTGATTCCCTTGTTGAGAAAAG
TGCAATTGGACATGTTCAATCAAGAGGGGACATGAGGATCGGGCCAGGAG
CAGCCGCAGTGGTAGCTGCTGAGGCCAGATGAGCATGAAATGGATGAAGG
GAAAATTTAAAAGAGACACATGACAATGGATGAGTTGGTGAATG
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protein sequence of NO19G00080.1

>NO19G00080.1-protein ID=NO19G00080.1-protein|Name=NO19G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MFYPRSLPPISRLFLLLSIIIRAVTPCGAAEPLVEGLSISSSLVKVTSFM
KKEVSQGDIAPLWFTVASFDDQPQHVNFQVLLPAASVTYREAAVFPPLDD
DLAVLHVLEGEERDMVAVMWTGVALAPGQSRVFNVDVKIEAISEQAAVQL
EAVVTRGSNLQSSVVLSTLPVTLTKRPKITKAFLEEKAVEKLRANPHKGR
PNEHEHESFADCKPLRQGPAAVEDCLAACYQEESQPCLACGYDPWSGCLC
KGKAKEDKDRYLDGVPVLYEREETEEDVKEIKSEAAQLYRPLFLDRRGEI
LIFPGLFSEEQCLDMEGYLAELVAEHKTQRHIVPGVNDSPLHALVKRMLP
IPEATFEEFVTFSEEDVEVDPHYDEVKNGETHKLLLFLDTVAGTRFWESK
ETYRKKNCPLVVGPARGTVVIFPMSLYHDSARYEPQYSIKRTLGLRMSLP
PFDSLVEKSAIGHVQSRGDMRIGPGAAAVVAAEAR*
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Synonyms
Publications