NO19G00070, NO19G00070 (gene) Nannochloropsis oceanica

Overview
NameNO19G00070
Unique NameNO19G00070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1533
Alignment locationchr19:15807..17339 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:15807..17339 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO19G00070 vs. NCBI_GenBank
Match: EWM23490.1 (hypothetical protein Naga_100198g8 [Nannochloropsis gaditana])

HSP 1 Score: 163.7 bits (413), Expect = 5.400e-37
Identity = 88/175 (50.29%), Postives = 109/175 (62.29%), Query Frame = 0 
Query:    6 FLGLCALLLACMVYATDPPVWPDIDFVSFKSNRASQRKGKSIRFTGIFRVNNFGLNDITYCGFKNEN---SSIITTSTGAAGIRFKQQNTLFKAKWYIKEVRSMGRIVWEFTPNGYALTQGRTYTTRMVVRVAKDTPQDAYTWRFFCESKYTNSSDFTYPGHYAFGKIYKTIPLL 178
            FLG C LL       T     PDI+FV FK NR  Q KG++I  T    +   G+ND+ YCGFKN N   S  + T+  AAGIRF QQ T+ KAKW+IKE RS GRI+WEF P GYALT+GR YT RM  +VA+DT  D+ TW FFCE+K T       P +Y+F +   T+PL+
Sbjct:    9 FLGACVLLSVTAQNQTK----PDIEFVGFKVNREQQIKGRNIMLTATANMKLMGINDLIYCGFKNLNTTGSPPVETALAAAGIRFSQQRTMAKAKWFIKEKRSAGRIIWEFDPRGYALTEGRIYTYRMRNKVARDTIPDSVTWAFFCETKLTGQ-----PNYYSFQESI-TVPLV 173
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BLAST of NO19G00070 vs. NCBI_GenBank
Match: XP_005854239.1 (hypothetical protein NGA_0024220, partial [Nannochloropsis gaditana CCMP526] >EKU22119.1 hypothetical protein NGA_0024220, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 99.0 bits (245), Expect = 1.600e-17
Identity = 54/108 (50.00%), Postives = 65/108 (60.19%), Query Frame = 0 
Query:    6 FLGLCALLLACMVYATDPPVWPDIDFVSFKSNRASQRKGKSIRFTGIFRVNNFGLNDITYCGFKNEN---SSIITTSTGAAGIRFKQQNTLFKAKWYIKEVRSMGRIV 111
            FLG C LL       T     PDI+FV FK NR  Q KG++I  T    +   G+ND+ YCGFKN N   S  + T+  AAGIRF QQ T+ KAKW+IKE RS GRI+
Sbjct:    9 FLGACVLLSVTAQNQTK----PDIEFVGFKVNREQQIKGRNIMLTATANMKLMGINDLIYCGFKNLNTTGSPPVETALAAAGIRFSQQRTMAKAKWFIKEKRSAGRII 112
The following BLAST results are available for this feature:
BLAST of NO19G00070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23490.15.400e-3750.29hypothetical protein Naga_100198g8 [Nannochloropsi... [more]
XP_005854239.11.600e-1750.00hypothetical protein NGA_0024220, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL014nonsL014Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR075ncniR075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR038ngnoR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007700NSK007700Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00070.1NO19G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611002gene_10564Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100198g8gene6964Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00070.1NO19G00070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00070 ID=NO19G00070|Name=NO19G00070|organism=Nannochloropsis oceanica|type=gene|length=1533bp
TAAGAAGCTAACGGGCTTCTCTCCAACGGGCGATTTTTAAATATGGAAGG
CACGCGCTTGGTCTTGGTCTTCTCTCGTCTCCGGGTTCGTTCGAGCAAGG
GCAGACACCTGGCACGAAGAGGGGCACACGACCCTCGTTGTTTCCAATTG
AACAGTCTTACAGAAATGAGAAGTAGGAGAGACCAGCAAATATCTGTCCG
CTTTGGACTTTCTTCTGCTTCTAGTATTGCGGCCCATGCCCCACTCCGTC
TTTTGTCCTCAGCACTAGCCCTTCCTCATGTAGCCTTTCATTCTCATACT
CACCCTTCTACTCCATAAACACGACGCATACAGATAATTATGGGATCCCG
TGCCTTTCTGGGCCTTTGTGCCTTGCTTTTGGCGTGCATGgtaagtcggt
ccaacaattatgcgtgaccagtggttggatagcctgcatagtccttgcct
gcctggcatttatgtcgacgtcgtcccgaatcactcttgtaccgaatcac
cacccatagGTTTACGCCACAGACCCTCCTGTTTGGCCCGATATCGACTT
TGTATCCTTCAAGTCCAACAGGGCGAGCCAACGCAAGGGAAAGAGCATCC
GGTTTACCGGCATCTTCAGGGTCAACAACTTTGGGCTGAATGACATCACC
TACTGCGGGgtgagtcggacaaaggaataagaaagaaaggatcggcgtga
gcggtgaatgattcacgcgcttggtattacatttatccggtactcatgca
cgttatctcccctctttttgctccactccccatcttgtccgaccaacaac
agTTCAAGAATGAAAACAGCAGCATAATTACAACCAGCACTGGCGCTGCA
GGAATTCGCTTCAAGCAGCAGAACACACTGTTTAAAGCCAAGTGGTACAT
CAAGGAGGTCCGCTCCATGGGCCGCATTGTCTGgtaataaacacccgcac
ccctccggatatctctgccattccatgctcccttccccttttcgctcacc
ccatttccaccctttttctcatttcatcagGGAATTCACCCCCAACGGGT
ACGCCTTGACGCAGGGCCGGACCTACACTACCCGCATGGTCGTCAGGGTT
GCCAAGGACACCCCCCAAGATGCCTACACTTGGCGCTTCTTCTGCGAGTC
CAAATACACAAACTCCAGTGATTTCACATATCCAGGCCATTACGCTTTCG
GCAAGATCTACAAGACTgtacgtatctcggacgggctcgtatcctcttgc
gtacggaaccctaatcaataaccattactctgctaccccatagATCCCCC
TTCTGCCGGCCAAAAACTGAATGAGGCACTTACGAAAAAGTGAAAACTAT
TGGACTACGATACGATTATGCGGTAGGGGCACGCAGGAGAAAAAAAGATC
TCGACATGGCGGCTGAGCAGGAAGGATAATACGAGGATTGAGCGAAAGGA
CAGCGGGCTTGGCTTGCTTGTCTCCGGTATTAAAAGAAAGGAGATGGAGA
CAAAAGAAGTCCAGCAATACAATCTAATAACAA
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protein sequence of NO19G00070.1

>NO19G00070.1-protein ID=NO19G00070.1-protein|Name=NO19G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MGSRAFLGLCALLLACMVYATDPPVWPDIDFVSFKSNRASQRKGKSIRFT
GIFRVNNFGLNDITYCGFKNENSSIITTSTGAAGIRFKQQNTLFKAKWYI
KEVRSMGRIVWEFTPNGYALTQGRTYTTRMVVRVAKDTPQDAYTWRFFCE
SKYTNSSDFTYPGHYAFGKIYKTIPLLPAKN*
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Synonyms
Publications