NO19G00020, NO19G00020 (gene) Nannochloropsis oceanica

Overview
NameNO19G00020
Unique NameNO19G00020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4417
Alignment locationchr19:3068..7484 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:3068..7484 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G00020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR075ncniR075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00020.1NO19G00020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611052gene_10570Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00020.1NO19G00020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00020 ID=NO19G00020|Name=NO19G00020|organism=Nannochloropsis oceanica|type=gene|length=4417bp
ACAGGGCTTTTTGTTGAGCGTGTGGCGGACTTCTTTGTCATCGTCACCAT
CGCCGAATTCTAACGTTCCTGAGTCAAGTCCATGGGACCTCATCAGAATC
CTAACAGAGTGAAGCGCCCTCCGACGGAAGAAGAATCGATGGCGGACCGA
GACCGAAGAATTCAGTCTGGGGATCGAATTTCCAAAGCAGTGCGGGAGTA
TGCGTCCAGGCTACGATATGGTACTAACGTTGTGATCAAGGAACTGCATG
CGAAAGGAACTGCGGATGAATGCAAGgtactggtagagtgatattgcgtc
ggggggatggacagccatgtgcatccgcacccaccgcctcgaacactcac
atatataaacacccacaaagACGCCACAAGCGAACAGTGTGTTGGCTGAG
AGATGGGTTGAATCTGGACTGGGTAGTTTCATCCAAGCCTGCAAAAGAGG
TGAATTCGTCGATCTAGGGATTTTCACCCGTGAGGCCCCCTTGGATGCTT
TGCAACTGAGAAGGAAAGTGGCTTATATCTCGGCCATTTTTTTTTTAATA
CATGGTCACGCTAAGACGACACTTGTTGGCGCTTGAACCACATTTGACAA
GCACGACCTTGACACAAAAGGAAGGAGCCGAGGTGGCCAAGCGTTTGTGT
TCAACTTTGAGAAGTTGGGTGGAAGGAAAGAAAGACACGGAATGGCCTGA
GGCAATAAGGACCATGAGGTTGAGGGCGAACGCGAAGGAACGAAAGCCAG
AGGCGGAGGAAAGAGTCCGATCAATACCGTTGCCTGGTGCAGGGCTCATG
ACAATAATTGGGTTGCAGAAAGAGCTTCTTGGTGAGAACACGGAACGGGC
CGCAGAAGACGAGGGCTCGGATCGGTCAGCTACGGATACTGATGAAAATC
ATGATGAGGAGGAGAGTGCAGCTAATGAAGAAGAGGAGGAGGGAGAGCAG
GAAAAGGAGGTGGAACCAGACCGATTGACCGTGGAGTACTTGTCCAGGTG
TATCACTGCAAGCGAGAAGGCAGTGGTAAAAAATTCGAGAAAGATGTTGA
AATATGATAAGACAGCGCTACGTTTGGTGTTGCGTTCTATGAAACAACTG
GTCCGACACTATAAAGATACTATGACAGAGCTGTGTGACTGCAATAACAT
CGGGTATGGACTTTTTCAATCATTGAACAAGGCACACAAGGTGGATATTA
AGAAAGAGGCAGCAAGAAAACGGAAAAAGAACACAGCAAGAAAACGAAGA
CAAGAAGTGGCAAGAAAGAAAAAGAGCAAGCAGCCCCAAAAATGAGAGAA
CGCAGGAGGATGGAAAACGAAGGAGAGGAAGCATACGGGGAACAAAATGA
AATACGTCAATATAACGTGGGAGAACAAGAACAAGAAGAAGAAAGAGATG
ATGAGCAAGAAGAAGAAGAAGATGATGAGCAAGAAGTGCAAGAGGAAACA
CGACAATACGATGTGGCGGAGAAACTAGAACAAGAGAGTGAAGCAGAAGA
AGTACAACGACAGCAAGAAGCAGAAGACGATTATGACAGTGAATGAGAAA
AAGTAGCGAAAATGAAGAGACGTCCCAGAAAAATAGCAGAAAACACAGAA
GCATCACAGCTGGAGACAATAGTGTCTGCGGGATCAGCGTTTTACCCTGG
ACCAATGGAGCTTGTGACACCACCTGCAGGACACACTGGCTTGATCCCCC
CAAAAAAGAAAAGAAAGAAAACGTCGGGGTCGGAGAAAGTCAGGAGAAAG
CAGAAGAGGTCAGATGAAGCGAGGAAGAAACCAAAGATGACCTCGAAGAA
GGATGCATAAATACCGTAGAAAGAAACATTGTGTTCCTTGGAAGTAGATC
TGGCTATTTGGTTGACTTTGTTGCGTTGTGGAAGGATCGGAACGGAGGAA
CTTGGTCCAAGTTCCACCCCTCCTACATATAGTGTGATGTAAATGAGGAA
GCAATACTACAAGGCTTGATAGTCAGCATCGAATAGCTTATTTCCATTTG
AAGGGACTTTCTTCTTCTAATTTGGATATGAAGTGCTCCGCGCCCATTGC
AGCGCTCCTTGAGCGCCCCTTCCAAGGGGGCTTATTTACCACTAAATAGG
CCTAACACTTAGGACAGTGTGAATGAAGGGTATAAACAAGTCAACACAGG
GGAAGTCTGATCAAGAGTTTTAAGCATTCCTTTCGATGACTTTGATGAAA
TCCTCATTTAAAGGTCGACAGAAGAAGCTTGGTCGATGATCTCCTCCTCC
AATACATGACACTACCCCGTAAATTGGCCTAACACTACCTATATGACACT
TACCCACTTTGATCAACCGATATATGACACTACCCTCCTTTGATCAATCG
AATGATCTTTTCTTTCAGTTCCTTTTTTAATCATTAAGTACCCTCTTTTA
TTCATCACATTCCTCGTTAATACAAGCAGCGTGCTTATCTTGACCTATCT
TTGCTTTCCCTCTCTTTTTGAATTCTTTTGTACTCGCTTCCTCTCTCGAA
CCTGACACATTGCACCAGTGAATGTACACCCTGAGTGGATAACCTTTTCC
TCCGATTATGCTATCCTCCCTCATATCCTTTGCTCTATTAACCCTAAGAT
TGCTCTTATACAATTAGGACATGGGAATTGATCCGTTCTGCATGCTACTA
TGGATTTCCATCTCTTCTTCTGTGATCATACCCGCTGACCCTATCCCCGC
TTCTTCTGCCCTCCTTCAATGCAGCCGAGATAACAAGCCAATCATGCCCT
CTCCGTTATTCTTCTATTACTTTTGTTCTTCTCCGTCTGCTCACATCCGA
AACACTCCAAATCTTGTCTTTTCCATCTGCTCCTTTACCGCCACAGCCAA
CGCCAGCCCCAGGACTTGGCGGGTATCTTGGGGTCGGATCACGCCGTCGT
CCCACAGACGCGCCGAGGAGTAGTAGCAAGAAGATTCGCGGTTGAATTTC
TCTAGAATAGGAGCCTTGAAAGCGGTTTCTATGAAGTTTGGAAGAAGAGA
GAAAGGGAGAGGAGCAGGAGAGAATATGTGGGCAGAGAGTGTCAGCAATA
AGACTCACGAGCGTACTAAGCCTTGAAGACAGTTACTGGATCTCAAAGAT
AGCTACCGAAACTGAGGGAGGCGGGGAAGAATAGAGAAATAGATACCTTG
ATGGTTATCCTTCTTGATTTCCGACTGGTTCTGGGCTTCAGAAAGAGTTC
CACCCCATCTCTATTTCCCACCCCTTTCGCTCTCGTCCGTCTCTCTCACC
TTCGATCGCTGTCCAGTTCTTCGCTAGTGCGGGCAAAGCTTGCTGTCTCA
CCCCCCACACCTCATGACTGGATGCTCTCTCATGCTCGTGTCGGACAACA
TGGATCAACAGAAATCACTCCCCCTGCCCTTCCCCCATTTCTCCCTCACC
TTCTTCTGCTGTCCATTCCTTTCCTTGAGCGGCAACAGTGGCTAGTACAT
TTGCAGCTTGCTCCCCTCCCATCACGCTGATCTTGGCGTTTGGCCACATA
AACAAAAAGCGAGGGGAAAAGGCACGTCCGCACATGCCATAGTTGCCCGC
ACCGTAAGAGCCCGCGATCAGAAGGGTCAGCTTAGGGACCTAGGGAGAGG
AAATTAGCGAGGAAGAGAGGGAGGAAAGAGCGAGAGAATCAGTGGAGGAG
GACCAGGTCGCCCGCACATTCCGGCATCGCTCACTTCGTAATAAAGCACG
CACACAAGGATGCAGAGAAGGGACAGAAAAGAGAGGAGGGTGGACAAGGA
AGCGCCGAGGATGAAAAGCAGTTGACATCCTTGCGCGGAGGGGAAAATGC
AGGAATGAGGAAGAGAGTGCAGAGAGGAAAGAAGTAAAGGCTGGTAGTGT
TCGCTTACCCCGGAAGAAAGAGAAGTACAATGAGGATGAGAGCGAAAAGA
AAGGAGGGAAGGAAGGGGGGCGGAGGAAACGGGAAGGAAGAGAAGAGGGA
GGGAGGGCGCGCCTACCTTGGAGGTGGAGACCGCTGTGACGAGCTTAGCC
CCGTTTTTGGCGATACCCTCATTCTCGTACTTCCGACCCACCATGAAGCC
CGTGATGTTCTGAGGAGGGGAAGGAAGGAAAGAGCAAAAAAGGGAGAGGG
AGGGCGGATGAGCCTCATCGGACTCGGAACGACAATCAAGGCTCGTGAAG
GTTAGGTGGGGAGTATGCGAACGAAAAAGCGAGGTGTGGAAGCAGATATT
CATCATGGATCAAGGTGTCTCGGCAATGAAGGAGAGGAATGTAGGGGAAA
AAGGAAAAAGGAAGCAAGAGCAGCAAATAGGGATGACACGCCAGCTGTGA
TTACGACGAAGGGAGCGAGTGAAGGAGGAGAGAAAGGGGAACAGAAAGAA
GGAGAAAGGGAGGGGGAGGGAGGTTTGGATGAAGGGATCCCTACCTGGAG
AAAGACGAGAGGGATAT
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protein sequence of NO19G00020.1

>NO19G00020.1-protein ID=NO19G00020.1-protein|Name=NO19G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MVTLRRHLLALEPHLTSTTLTQKEGAEVAKRLCSTLRSWVEGKKDTEWPE
AIRTMRLRANAKERKPEAEERVRSIPLPGAGLMTIIGLQKELLGENTERA
AEDEGSDRSATDTDENHDEEESAANEEEEEGEQEKEVEPDRLTVEYLSRC
ITASEKAVVKNSRKMLKYDKTALRLVLRSMKQLVRHYKDTMTELCDCNNI
GYGLFQSLNKAHKVDIKKEAARKRKKNTARKRRQEVARKKKSKQPQK*
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Synonyms
Publications