NO19G00010, NO19G00010 (gene) Nannochloropsis oceanica

Overview
NameNO19G00010
Unique NameNO19G00010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length591
Alignment locationchr19:870..1460 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:870..1460 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO19G00010 vs. NCBI_GenBank
Match: EWM30045.1 (hypothetical protein Naga_101600g1 [Nannochloropsis gaditana])

HSP 1 Score: 122.5 bits (306), Expect = 1.500e-24
Identity = 76/197 (38.58%), Postives = 115/197 (58.38%), Query Frame = 0
Query:    1 MRCAVSLLALGITLAVTVAEPDDPTLILTSIKAVDNARPYKDKWSMKGYLNDPEAVAIQAIDVLGMSAGIGNEITSTTLSLIEFDAGDCKLLKNDNGIICKTTGARVSFKRSKRVPKDAMIQAQRNRNTTTASSYYRVSGAFSRQEF-NATVSPPLSAGVLVMSTGITDVNSKCTE--KGGARVTKVFCTPGPLSPT 195
            MR  +SLLALG+TL +T  +       L ++K  + ++  +D+WSMKG L++P    + AI  LG++  +  +++   L+   F A +CKLL+N  G+ CK  GARVS KR++R PK A +   ++ N+ +   YY  SG F R +F    V  PL+  V+V ST +  + S C+E  KG  R+TK+ CTPGP   T
Sbjct:    1 MRRILSLLALGVTLVMTAGQ----EFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNL-LDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRR-PKGAKV---KSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVVGSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVT 188          
BLAST of NO19G00010 vs. NCBI_GenBank
Match: EWM30036.1 (hypothetical protein Naga_100179g1 [Nannochloropsis gaditana])

HSP 1 Score: 115.9 bits (289), Expect = 1.400e-22
Identity = 78/200 (39.00%), Postives = 108/200 (54.00%), Query Frame = 0
Query:    1 MRCAVSLLALGITLAVTVAEPDDPTLILTSIKAVDNARPYKDKWSMKGYLNDPEAVAIQAIDVLGMSAGIGNEITSTTLSLIEFDAGDCKLLKNDNGIICKTTGARVSFKRSKRVPKDAMIQAQRNRNTTTASSYYRVSGAFSRQEF-NATVSPPLSAGVLVMSTGI--TDVNSKCTE--KGGARVTKVFCTPGPLSPTR 196
            MR A  LLALGITL +T  +       L ++K +D ++  +D+WSMKG L+DP    +  I   G++  +  ++   TL    F A DCKL +N  G+ CKT GARVS K S+R PK A +Q   N N  +   YY  SG F R +F    +  PL+  + V S     + + S C+E  KG  R T++ CTPGP   TR
Sbjct:   20 MRRAFFLLALGITLVMTAGQ---DLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVEL-QDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRR-PKGAYVQ---NSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPTPLTR 211          
BLAST of NO19G00010 vs. NCBI_GenBank
Match: XP_005855033.1 (hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526] >EKU21331.1 hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 114.0 bits (284), Expect = 5.300e-22
Identity = 77/199 (38.69%), Postives = 107/199 (53.77%), Query Frame = 0
Query:    1 MRCAVSLLALGITLAVTVAEPDDPTLILTSIKAVDNARPYKDKWSMKGYLNDPEAVAIQAIDVLGMSAGIGNEITSTTLSLIEFDAGDCKLLKNDNGIICKTTGARVSFKRSKRVPKDAMIQAQRNRNTTTASSYYRVSGAFSRQEF-NATVSPPLSAGVLVMSTGI--TDVNSKCTE--KGGARVTKVFCTPGPLSPT 195
            MR A  LLALGITL +T  +       L ++K +D ++  +D+WSMKG L+DP    +  I   G++  +  ++   TL    F A DCKL +N  G+ CKT GARVS K S+R PK A +Q   N N  +   YY  SG F R +F    +  PL+  + V S     + + S C+E  KG  R T++ CTPGP   T
Sbjct:    1 MRRAFFLLALGITLVMTAGQ---DLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVEL-QDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRR-PKGANVQ---NSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPTPVT 191          
BLAST of NO19G00010 vs. NCBI_GenBank
Match: EWM20135.1 (hypothetical protein Naga_101626g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 109.8 bits (273), Expect = 1.000e-20
Identity = 71/191 (37.17%), Postives = 108/191 (56.54%), Query Frame = 0
Query:    1 MRCAVSLLALGITLAVTVAEPDDPTLILTSIKAVDNARPYKDKWSMKGYLNDPEAVAIQAIDVLGMSAGIGNEITSTTLSLIEFDAGDCKLLKNDNGIICKTTGARVSFKRSKRVPKDAMIQAQRNRNTTTASSYYRVSGAFSRQEF-NATVSPPLSAGVLVMSTGITDVNSKCTE--KGGARVTKVFCTP 189
            MRC +SLLALGITL +T  +       L +IK     +  +D+WSMKG L++P    +  I   G++  +  + + + L+   F A +CKLL+N  G+ CK+ GARV  KR++R PK A +++    +T     YY  SG F R +F   TV  PL+  ++V +T +  + S C+E  K   R+TK+ CTP
Sbjct:    1 MRCILSLLALGITLVMTAGQ----EFTLKNIKVAGRFKTARDQWSMKGNLDNPTMNVVPVIGQSGLTVNL-LDASLSPLASAAFAATNCKLLRNARGVSCKSMGARVYIKRTRR-PKAAKVKSSSYNST---GGYYAASGMFRRLQFLQDTVVTPLTVQLVVGTTTLPAIVSTCSERTKSAGRITKITCTP 182          
BLAST of NO19G00010 vs. NCBI_GenBank
Match: EWM22005.1 (hypothetical protein Naga_100353g3 [Nannochloropsis gaditana])

HSP 1 Score: 107.8 bits (268), Expect = 3.800e-20
Identity = 74/196 (37.76%), Postives = 100/196 (51.02%), Query Frame = 0
Query:    1 MRCAVSLLALGITLAVTVAEPDDPTLILTSIKAVDNARPYKDKWSMKGYLNDPEAVAIQAIDVLGMSAGIGNEITSTTLSLIEFDAGDCKLLKNDNGIICKTTGARVSFKRSKRVPKDAMIQAQRNRNTTTASSYYRVSGAFSRQEFNA-TVSPPLSAGVLVMSTG-ITDVNSKCTEKGGARVTKVFCTPGPLSPT 195
            MR  +SLLALG+TLA+T  +     L L SIK  +  R  KDKWSMKG L DP    +  I   G++  +  +    TL    F AGDC + KN  G  CK  GARVS + SK  PK   +     +   +   YY VSG+F   +     V  PL+A + V   G ++   + C+ + GA  T+  C PGP+ PT
Sbjct:   68 MRRGLSLLALGLTLALTTGQ----MLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTL-LDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRASK-PPKGVKV-----KTYNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCSVR-GAGTTRTTCVPGPIIPT 251          
BLAST of NO19G00010 vs. NCBI_GenBank
Match: EWM20521.1 (hypothetical protein Naga_100335g8, partial [Nannochloropsis gaditana])

HSP 1 Score: 103.2 bits (256), Expect = 9.300e-19
Identity = 74/198 (37.37%), Postives = 102/198 (51.52%), Query Frame = 0
Query:    1 MRCAVSLLALGITLAVTVAEPDDPTLILTSIKAVDNARPYKDKWSMKGYLNDPEAVAIQAIDVLGMSAGIGNEITSTTLSLIEFDAGDCKLLKNDNGIICKTTGARVSFKRSKRVPKDAMIQAQRNRNTTTASSYYRVSGAFSRQEF--NATVSPPLSAGVLVMSTGITDVNSKCTE--KGGARVTKVFCTPGPLSPT 195
            MR  +SLLALGITL  T+       L L SI+AVD +   KD W MKG +NDP    + AI   G++  + +  T   L+ + F A DC++  +     CK  GARVS KRS+R PK    +    ++  +   YY V+G F    F  N  VS PL+A + V  + ++D    C +  +  AR T   C PGP  PT
Sbjct:    1 MRSPLSLLALGITLGSTLVTTAGQDLNLKSIRAVDRSVTNKDTWKMKGNINDPSLTFVPAIGQTGLTVELQDAATD-PLNTVAFAASDCRVPAHGRRAACKIRGARVSIKRSRR-PKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVS-PLTAALRVNGSVLSDTLISCYDLARKSARSTISQCEPGPPVPT 195          
BLAST of NO19G00010 vs. NCBI_GenBank
Match: XP_005852576.1 (hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526] >EKU23255.1 hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 101.7 bits (252), Expect = 2.700e-18
Identity = 71/192 (36.98%), Postives = 101/192 (52.60%), Query Frame = 0
Query:    1 MRCAVSLLALGITLAVTVAEPDDPTLILTSIKAVDNARPYKDKWSMKGYLNDPEAVAIQAIDVLGMSAGIGNEITSTTLSLIEFDAGDCKLLKNDNGIICKTTGARVSFKRSKRVPKDAMIQAQRNRNTTTASSYYRVSGAFSRQEFNA-TVSPPLSAGVLVMSTG-ITDVNSKCTEKGGARVTKVFCTPGP 191
            MR  +SLLALG+TLA+T  +     L L SIK  +  +  KDKWSMKG+L DP    +  I   G++  +  ++ + TL    F AGDC + K+  G  CK  GARVS + SK  PK         ++  +   Y+ VSG+F R +     V  PL+A + V   G ++   + C+ K G +  KV C PGP
Sbjct:    1 MRRGLSLLALGLTLALTTGQ----MLSLKSIKTFERTQMNKDKWSMKGHLEDPTLAVVSGIGTNGLTVTL-LDMAADTLDTASFAAGDCMVRKSSKGARCKMMGARVSIRASK-PPKGV------GKSHNSTGGYFSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVK-GTKTRKVTCVPGP 179          
BLAST of NO19G00010 vs. NCBI_GenBank
Match: EWM22002.1 (hypothetical protein Naga_100353g5 [Nannochloropsis gaditana])

HSP 1 Score: 101.7 bits (252), Expect = 2.700e-18
Identity = 72/192 (37.50%), Postives = 98/192 (51.04%), Query Frame = 0
Query:    1 MRCAVSLLALGITLAVTVAEPDDPTLILTSIKAVDNARPYKDKWSMKGYLNDPEAVAIQAIDVLGMSAGIGNEITSTTLSLIEFDAGDCKLLKNDNGIICKTTGARVSFKRSKRVPKDAMIQAQRNRNTTTASSYYRVSGAFSRQEFNA-TVSPPLSAGVLVMSTG-ITDVNSKCTEKGGARVTKVFCTPGP 191
            MR  +SLLALG+TLA+T  +     L L SIK  +  +  KDKWSMK +L DP    +  I   G++  +  +    TL    F AGDC + KN  G  CK  GARVS + SK  PK         ++  +   YY VSG+F R +     V  PL+A + V   G ++   + C+ K G +  KV C PGP
Sbjct:   80 MRRGLSLLALGLTLALTTGQ----MLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTL-LDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASK-PPKGV------GKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVK-GTKTRKVTCVPGP 258          
BLAST of NO19G00010 vs. NCBI_GenBank
Match: EWM22004.1 (hypothetical protein Naga_100353g6 [Nannochloropsis gaditana])

HSP 1 Score: 101.7 bits (252), Expect = 2.700e-18
Identity = 72/192 (37.50%), Postives = 98/192 (51.04%), Query Frame = 0
Query:    1 MRCAVSLLALGITLAVTVAEPDDPTLILTSIKAVDNARPYKDKWSMKGYLNDPEAVAIQAIDVLGMSAGIGNEITSTTLSLIEFDAGDCKLLKNDNGIICKTTGARVSFKRSKRVPKDAMIQAQRNRNTTTASSYYRVSGAFSRQEFNA-TVSPPLSAGVLVMSTG-ITDVNSKCTEKGGARVTKVFCTPGP 191
            MR  +SLLALG+TLA+T  +     L L SIK  +  +  KDKWSMK +L DP    +  I   G++  +  +    TL    F AGDC + KN  G  CK  GARVS + SK  PK         ++  +   YY VSG+F R +     V  PL+A + V   G ++   + C+ K G +  KV C PGP
Sbjct:   11 MRRGLSLLALGLTLALTTGQ----MLSLKSIKTFERTQMNKDKWSMKAHLEDPTLAVVSGIGTSGLTVTL-LDTADDTLDTATFAAGDCMVRKNSKGARCKMMGARVSIRASK-PPKGV------GKSHNSTGGYYSVSGSFRRVQLQEDPVDFPLTAELTVPGVGTLSQTLTGCSVK-GTKTRKVTCVPGP 189          
BLAST of NO19G00010 vs. NCBI_GenBank
Match: EWM20105.1 (hypothetical protein Naga_101776g1 [Nannochloropsis gaditana])

HSP 1 Score: 100.9 bits (250), Expect = 4.600e-18
Identity = 64/177 (36.16%), Postives = 102/177 (57.63%), Query Frame = 0
Query:    1 MRCAVSLLALGITLAVTVAEPDDPTLILTSIKAVDNARPYKDKWSMKGYLNDPEAVAIQAIDVLGMSAGIGNEITSTTLSLIEFDAGDCKLLKNDNGIICKTTGARVSFKRSKRVPKDAMIQAQRNRNTTTASSYYRVSGAFSRQEF-NATVSPPLSAGVLVMSTGITDVNSKCTEK 177
            MR  +SLLALG+TL +T  +       L ++K  + ++  +D+WSMKG L++P    + AI  LG++  +  +++   L+   F A +CKLL+N  G+ CK  GARVS KR++R PK A +   ++ N+ +   YY  SG F R +F    V  P++  V V ST +  + S C+E+
Sbjct:   37 MRRILSLLALGVTLVMTAGQ----EFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNL-LDVSLDPLASTAFAATNCKLLRNGRGVSCKKMGARVSIKRTRR-PKGAKV---KSSNSNSTGGYYGASGMFRRLQFLQDPVVTPVTVQVKVGSTTLPAIVSTCSER 204          
The following BLAST results are available for this feature:
BLAST of NO19G00010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 15
Match NameE-valueIdentityDescription
EWM30045.11.500e-2438.58hypothetical protein Naga_101600g1 [Nannochloropsi... [more]
EWM30036.11.400e-2239.00hypothetical protein Naga_100179g1 [Nannochloropsi... [more]
XP_005855033.15.300e-2238.69hypothetical protein NGA_0415500 [Nannochloropsis ... [more]
EWM20135.11.000e-2037.17hypothetical protein Naga_101626g1, partial [Nanno... [more]
EWM22005.13.800e-2037.76hypothetical protein Naga_100353g3 [Nannochloropsi... [more]
EWM20521.19.300e-1937.37hypothetical protein Naga_100335g8, partial [Nanno... [more]
XP_005852576.12.700e-1836.98hypothetical protein NGA_0721300 [Nannochloropsis ... [more]
EWM22002.12.700e-1837.50hypothetical protein Naga_100353g5 [Nannochloropsi... [more]
EWM22004.12.700e-1837.50hypothetical protein Naga_100353g6 [Nannochloropsi... [more]
EWM20105.14.600e-1836.16hypothetical protein Naga_101776g1 [Nannochloropsi... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR075ncniR075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00010.1NO19G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611055gene_10572Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00010.1NO19G00010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00010 ID=NO19G00010|Name=NO19G00010|organism=Nannochloropsis oceanica|type=gene|length=591bp
ATGCGTTGCGCGGTTTCTCTGCTTGCCCTCGGCATCACCCTCGCCGTTAC
GGTGGCTGAGCCGGATGACCCGACCTTAATCCTCACCTCCATCAAGGCTG
TTGACAACGCCAGGCCGTATAAGGACAAATGGAGTATGAAGGGCTACCTC
AATGACCCTGAGGCGGTAGCAATCCAGGCCATTGACGTGCTTGGCATGTC
CGCGGGGATTGGAAACGAAATCACCTCCACAACCTTGAGCTTGATCGAAT
TTGACGCGGGTGATTGCAAATTGCTGAAAAATGATAATGGAATCATTTGT
AAGACTACGGGCGCTCGTGTCTCTTTCAAGAGGTCTAAGAGGGTGCCCAA
GGACGCCATGATTCAGGCGCAGAGAAACCGAAACACGACCACCGCATCTT
CCTACTACAGGGTTTCGGGTGCTTTTAGCCGCCAGGAATTCAATGCCACT
GTATCACCGCCTCTTTCTGCAGGTGTCCTCGTAATGTCTACTGGAATAAC
TGACGTCAATTCTAAATGCACTGAGAAAGGAGGAGCTAGGGTCACTAAGG
TCTTTTGCACGCCTGGTCCATTATCACCCACCCGAAAATAG
back to top

protein sequence of NO19G00010.1

>NO19G00010.1-protein ID=NO19G00010.1-protein|Name=NO19G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MRCAVSLLALGITLAVTVAEPDDPTLILTSIKAVDNARPYKDKWSMKGYL
NDPEAVAIQAIDVLGMSAGIGNEITSTTLSLIEFDAGDCKLLKNDNGIIC
KTTGARVSFKRSKRVPKDAMIQAQRNRNTTTASSYYRVSGAFSRQEFNAT
VSPPLSAGVLVMSTGITDVNSKCTEKGGARVTKVFCTPGPLSPTRK*
back to top
Synonyms
Publications