NO18G02390, NO18G02390 (gene) Nannochloropsis oceanica

Overview
NameNO18G02390
Unique NameNO18G02390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3086
Alignment locationchr18:775199..778284 -

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Properties
Property NameValue
DescriptionMyb domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:775199..778284 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR017930Myb_dom
IPR001005SANT/Myb
Homology
[Close]
BLAST of NO18G02390 vs. NCBI_GenBank
Match: EWM23448.1 (myb domain-containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 179.9 bits (455), Expect = 2.700e-41
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 0 
Query:  113 QLTQKWTQEEDSLLTELVLQHGQRDWGLVASHMPGTHRKGKQCRERWRNQLDPNIKRDPWTAEEERTLIDAHARWGNKWADIAKLLPGRTDN 205
            QLTQKWTQEED++L ELV  HGQRDWGLVASHMPG  RKGKQCRERWRNQLDPNIKRDPWT EEER LI+AHA+WGNKWADIAKLLPGRTDN
Sbjct:  158 QLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
[Close]
BLAST of NO18G02390 vs. NCBI_GenBank
Match: XP_008862563.1 (hypothetical protein H310_01276 [Aphanomyces invadans] >ETW08758.1 hypothetical protein H310_01276 [Aphanomyces invadans])

HSP 1 Score: 147.5 bits (371), Expect = 1.500e-31
Identity = 66/100 (66.00%), Postives = 80/100 (80.00%), Query Frame = 0 
Query:  117 KWTQEEDSLLTELVLQHGQRDWGLVASHMPGTHRKGKQCRERWRNQLDPNIKRDPWTAEEERTLIDAHARWGNKWADIAKLLPGRTDNAIKNHWNTARRK 217
            KWT EEDSL+ ELV  HG R W ++ S +PG  R GKQCRERW NQLDP+I++DPWT +EE  L  AH ++GNKWA+IAKLLPGRTDNAIKNHWN+ +R+
Sbjct:   23 KWTPEEDSLMMELVQTHGTRRWSVIGSLLPG--RNGKQCRERWHNQLDPSIRKDPWTTDEETLLKVAHHKYGNKWAEIAKLLPGRTDNAIKNHWNSYKRR 120
[Close]
BLAST of NO18G02390 vs. NCBI_GenBank
Match: CCI44816.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 146.0 bits (367), Expect = 4.400e-31
Identity = 62/100 (62.00%), Postives = 83/100 (83.00%), Query Frame = 0 
Query:  117 KWTQEEDSLLTELVLQHGQRDWGLVASHMPGTHRKGKQCRERWRNQLDPNIKRDPWTAEEERTLIDAHARWGNKWADIAKLLPGRTDNAIKNHWNTARRK 217
            KWT EED+++ +LV ++G R W ++ + +PG  R GKQCRERW NQLDP+I++DPWT EEER L +AH ++GNKWA+IAK LPGRTDNAIKNHWN+++R+
Sbjct:   32 KWTDEEDNMMIKLVERYGTRHWTIIGTKLPG--RNGKQCRERWHNQLDPSIRKDPWTDEEERILKEAHEKYGNKWAEIAKKLPGRTDNAIKNHWNSSKRR 129
[Close]
BLAST of NO18G02390 vs. NCBI_GenBank
Match: CCA17540.1 (myblike DNAbinding protein putative [Albugo laibachii Nc14])

HSP 1 Score: 145.6 bits (366), Expect = 5.700e-31
Identity = 63/100 (63.00%), Postives = 82/100 (82.00%), Query Frame = 0 
Query:  117 KWTQEEDSLLTELVLQHGQRDWGLVASHMPGTHRKGKQCRERWRNQLDPNIKRDPWTAEEERTLIDAHARWGNKWADIAKLLPGRTDNAIKNHWNTARRK 217
            KWT EEDSL+ +LV ++G R W ++ + +PG  R GKQCRERW NQLDP+I++DPWT  EER L +AH ++GNKWA+IAK LPGRTDNAIKNHWN+++R+
Sbjct:   49 KWTDEEDSLMMKLVERYGTRHWTIIGTKLPG--RNGKQCRERWHNQLDPSIRKDPWTDVEERILKEAHGKYGNKWAEIAKKLPGRTDNAIKNHWNSSKRR 146
[Close]
BLAST of NO18G02390 vs. NCBI_GenBank
Match: XP_009821554.1 (hypothetical protein H257_00523 [Aphanomyces astaci] >ETV89154.1 hypothetical protein H257_00523 [Aphanomyces astaci])

HSP 1 Score: 143.7 bits (361), Expect = 2.200e-30
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 0 
Query:  117 KWTQEEDSLLTELVLQHGQRDWGLVASHMPGTHRKGKQCRERWRNQLDPNIKRDPWTAEEERTLIDAHARWGNKWADIAKLLPGRTDNAIKNHWNTARRK 217
            KWT EED+L+ ELV  HG R W ++ S + G  R GKQCRERW NQLDP+I++DPWT++EE  L  AH ++GNKWA+IAKLLPGRTDNAIKNHWN+ +R+
Sbjct:   23 KWTPEEDALMMELVQTHGTRRWSVIGSLLSG--RNGKQCRERWHNQLDPSIRKDPWTSDEETLLKVAHHKYGNKWAEIAKLLPGRTDNAIKNHWNSYKRR 120
[Close]
BLAST of NO18G02390 vs. NCBI_GenBank
Match: XP_012561174.1 (PREDICTED: transcriptional activator Myb-like [Hydra vulgaris])

HSP 1 Score: 143.7 bits (361), Expect = 2.200e-30
Identity = 62/99 (62.63%), Postives = 79/99 (79.80%), Query Frame = 0 
Query:  118 WTQEEDSLLTELVLQHGQRDWGLVASHMPGTHRKGKQCRERWRNQLDPNIKRDPWTAEEERTLIDAHARWGNKWADIAKLLPGRTDNAIKNHWNTARRK 217
            WT+EED L+TELVL++G + W L+ASH+ G  R GKQCRERW N L+PN+ +  W+ EE+R + DAH R GN+WADIAKLLPGRTDNAIKNHWN+  ++
Sbjct:   91 WTKEEDDLVTELVLKYGPKKWSLIASHLKG--RIGKQCRERWHNHLNPNVNKTAWSEEEDRLIFDAHDRMGNRWADIAKLLPGRTDNAIKNHWNSTMKR 187
[Close]
BLAST of NO18G02390 vs. NCBI_GenBank
Match: GAX94492.1 (myb-like DNA-binding protein, putative, partial [Pythium insidiosum])

HSP 1 Score: 143.3 bits (360), Expect = 2.800e-30
Identity = 60/100 (60.00%), Postives = 82/100 (82.00%), Query Frame = 0 
Query:  117 KWTQEEDSLLTELVLQHGQRDWGLVASHMPGTHRKGKQCRERWRNQLDPNIKRDPWTAEEERTLIDAHARWGNKWADIAKLLPGRTDNAIKNHWNTARRK 217
            KWT++ED ++ +LV ++G R W ++ + +PG  R GKQCRERW N LDP I++DPWT EEER L ++H R+GNKWA+IAK+LPGRTDNAIKNHWN+++R+
Sbjct:   17 KWTEKEDQMMIKLVQKYGTRHWTIIGTKLPG--RNGKQCRERWHNXLDPAIRKDPWTEEEERILRESHERFGNKWAEIAKMLPGRTDNAIKNHWNSSKRR 114
[Close]
BLAST of NO18G02390 vs. NCBI_GenBank
Match: XP_004345904.1 (Myblike DNA-binding domain containing protein [Acanthamoeba castellanii str. Neff] >ELR21360.1 Myblike DNA-binding domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 142.5 bits (358), Expect = 4.900e-30
Identity = 66/107 (61.68%), Postives = 84/107 (78.50%), Query Frame = 0 
Query:  118 WTQEEDSLLTELVLQHGQRDWGLVASHMPGTHRKGKQCRERWRNQLDPNIKRDPWTAEEERTLIDAHARWGNKWADIAKLLPGRTDNAIKNHWN-TARRKTTKRDPN 224
            WT+EED L+ +LV Q+G + W L+ASH+ G  R GKQCRERW N L+P+IK+D W+ EE+  LI+AH + GN+WA+IAKLLPGRTDNAIKNHWN T RRK  K +P+
Sbjct:  144 WTKEEDELVVKLVQQYGPKRWSLIASHLKG--RIGKQCRERWHNHLNPSIKKDAWSEEEDSMLIEAHRQLGNRWAEIAKLLPGRTDNAIKNHWNSTIRRKLAKTEPS 248
[Close]
BLAST of NO18G02390 vs. NCBI_GenBank
Match: XP_024575686.1 (myb-like dna-binding [Plasmopara halstedii] >CEG39317.1 myb-like dna-binding [Plasmopara halstedii])

HSP 1 Score: 142.5 bits (358), Expect = 4.900e-30
Identity = 62/107 (57.94%), Postives = 84/107 (78.50%), Query Frame = 0 
Query:  117 KWTQEEDSLLTELVLQHGQRDWGLVASHMPGTHRKGKQCRERWRNQLDPNIKRDPWTAEEERTLIDAHARWGNKWADIAKLLPGRTDNAIKNHWNTARRKTTKRDPN 224
            KWT++ED L+ +LV ++G R W ++ + +PG  R GKQCRERW NQLDP I+++PWT +EERTL   H  +GNKWA+IAKLLPGRTDNAIKNHWN+++R+  +  P+
Sbjct:   30 KWTEKEDLLMIKLVQKYGTRHWTVIGTKLPG--RNGKQCRERWHNQLDPAIRKEPWTPDEERTLKKLHDTFGNKWAEIAKLLPGRTDNAIKNHWNSSKRRLKRNGPS 134
[Close]
BLAST of NO18G02390 vs. NCBI_GenBank
Match: CBN75476.1 (putative c-myb-like transcription factor [Ectocarpus siliculosus])

HSP 1 Score: 141.7 bits (356), Expect = 8.300e-30
Identity = 63/107 (58.88%), Postives = 85/107 (79.44%), Query Frame = 0 
Query:  116 QKWTQEEDSLLTELVLQHGQRDWGLVASHMP--GTHRKGKQCRERWRNQLDPNIKRDPWTAEEERTLIDAHARWGNKWADIAKLLPGRTDNAIKNHWNTARRKTTKR 221
            +KW+++ED+ + +LVL+ G + WGL+ S +   G  R GKQCRERW NQLDP IK+DPWT  EE TL+ AH+  GNKWA+IAK+LPGRTDNAIKNHWN+A+R+ +++
Sbjct:   24 RKWSKQEDAEMVKLVLELGVKQWGLIGSRLSSLGEDRTGKQCRERWHNQLDPAIKKDPWTKAEEDTLMRAHSIHGNKWAEIAKILPGRTDNAIKNHWNSAKRRLSRQ 130
The following BLAST results are available for this feature:
BLAST of NO18G02390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23448.12.700e-4188.04myb domain-containing protein, partial [Nannochlor... [more]
XP_008862563.11.500e-3166.00hypothetical protein H310_01276 [Aphanomyces invad... [more]
CCI44816.14.400e-3162.00unnamed protein product [Albugo candida][more]
CCA17540.15.700e-3163.00myblike DNAbinding protein putative [Albugo laibac... [more]
XP_009821554.12.200e-3064.00hypothetical protein H257_00523 [Aphanomyces astac... [more]
XP_012561174.12.200e-3062.63PREDICTED: transcriptional activator Myb-like [Hyd... [more]
GAX94492.12.800e-3060.00myb-like DNA-binding protein, putative, partial [P... [more]
XP_004345904.14.900e-3061.68Myblike DNA-binding domain containing protein [Aca... [more]
XP_024575686.14.900e-3057.94myb-like dna-binding [Plasmopara halstedii] >CEG39... [more]
CBN75476.18.300e-3058.88putative c-myb-like transcription factor [Ectocarp... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02390.1NO18G02390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673774gene_8939Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101158g2gene7008Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02390.1NO18G02390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02390 ID=NO18G02390|Name=NO18G02390|organism=Nannochloropsis oceanica|type=gene|length=3086bp
ATGAAGTACGTTAGAAACAAGCAACGCACATCTCTCGCGGCAACTACTTT
CCCCTGCTCTTTGTAGACATCTTTTTGACACACCTGGCCTGACTCTTCGG
TACGAAATCTCCCTTATGTCCTTGCTGCGCACAAACACTCCCTGGATCGT
CCCGTGCGGCACACGGGCTTCGTCCTCCTCTTTGTTCCTCATCCTTCCTC
CCACATTGACCGGTGTCAAAGCAGCCCAGTAACAACTCAACCGTTCCTCA
CACATTCTCGCGTTGCACACCCTACTCTGTCCTCATTATAAAGGCATTTG
GTTGCCCGAGATGGCTAGACCCCTTGAGGCTGGGCGCATGGCTCCCTTCC
CCTTCCCTCTCCCATCCCTCTATCTAGTGCGCGGATAGCATGAATCCATG
CGTCTACCCTTTTTATTTTTAATGACACCTTACATGGCCCTTCACCTTCT
CCACGTCAAAACTTCATTTATCCATATACCGACGTAGGGAAAGAGCCAAG
TCCGCACGTGTCCGAGTCGGCGTGCGTGTTTGTGGTTGTGTCGCCGCCGC
CGCACCAGCAGCAGGAGCAGGAGCAGCAGCAGCAATCACAGGACCGAGCC
TTCTCCCTTGTTACGTATCAGTCCTTCGTTTGAGCAAGCAAGTCAGCCAA
GCACCATGAGTACACCCGCATGGGGTGAGGAGGTGGCTCGGCGTCTGAGT
GCGCTAAAGAAGCAGCAAGAGGAGGAAGAGGGAAAGGAGGGGGAGGAGGA
GTATATCCCGGAGGATGAAGACGAGGCAAGCGACGATGAGAGCGAGTACG
ATGAGGAGGAAAGCAACAGCGAAGGGAGCGGGAGCGGAGGGCGACGGGGG
AAGGGACGACGTGCTTCTGCGGGCAGGAGGTCAAACCGTGGGAAGGGTGG
AAAGGGAGGGGCGGGAGGCATATATGTAGTGGAGGAAGAGGAGGAAAAGG
ATTGGATGATGGGACCGGATGGGGTGCGGCGGCGTCGGAAGCAGCTGACG
CAGAAGTGGACGCAGGAGGAGGACTCGCTGTTGACGGAACTGGTTCTACA
GCACGGACAGCGGGACTGGGGGTTGGTTGCGAGCCATATGCCTGGCACCC
ATCGGAAAGGGAAGCAATGTCGCGAACGGTGGAGGAATCAGCTGGATCCC
AACATTAAGAGgtgcgtgagtgcgtgcacgtgggtgctggttgtttttct
ttccctttctctcctgaactttctcttcgtcctccctcaccttctcgtcc
ttcgtgtcggtctactttcacctcagactcaattttcttcactctcttcc
tttcgtactcccttcttccctccatccttcctttccccgcaacgacagGG
ACCCTTGGACGGCGGAGGAGGAACGAACGCTGATTGACGCCCACGCGCGA
TGGGGAAACAAGTGGGCGGACATTGCCAAACTCCTACCCGGACGTACGGA
TAACGCGATCAAGgtacaaatggagggagggaggggaggagggagggagg
gaaggagggggcagaaagggagaaaggaaggagaacgactcattttgttt
gtgctctcgcccacttggttcccatctatatcgtccactcatcgaaccgt
tcctttcttccctccctccctccctttcccctccccacagAACCATTGGA
ACACGGCCCGACGCAAGACCACCAAACGTGATCCCAATGCAACTCGTCCC
TCTTCCCGTCATCATCATGGACGAGCTCTCCATCTGCCCCCCCCTCCCGC
CTTCGGTCCTCCACACCCCTACACCCACCCCTCGCATCCTCCCCCTCCCC
ACTTCCTACACCACCACCCTCTCCCTACCCATGGACTGCCCCTCCTTCCC
CCTCGTCCTCCGTCCTTAACGCACCACCACCACCAGCAGCTCATTCAGCA
GCAGCACCATCAACAGCACCCGTACTCTCCCAATAGCCACCCCCATCCTC
CTCCCTACATGCAGGGACACTTTTCCCACCCTCACCCTCCTCCTCCGCTG
CATCTCCAGCAGCAGTTTCTTCCTCCACCACCCCCTGATCACCATTATCA
TCATCCGCAGCAGCTGCAGCAGCAACAGCACGAGAAACAACAACATCCAC
AACACCAGCATTTACATCACCTCCACCAGCACGCCCAGCACCAGCACCAC
CAGCAGGAGCATGTCCCTCCCCCTCCTCCTCCTCCTCAGACCTCAGAGGG
ACAATATCATCGTTTAGCTGAGTTCCACAAAACCATACATGGCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCACCCCTCGACCTCACGAGTGGGCC
TCGGCTGAGCAACAGCAGCAGGAGCAGCAGCAGCAGCAGCAGTTGCCACC
CTCTACTCCTTCATACCAGCGTTCCACCTATTCACCCAGGGAGGAAGGCG
GGAGGGAGGAAGGGCAGAAACATTCCTCCCTCCCTTCCTTACTGTACGAT
GGACAGCAGCAGCAGCAGCACCAGCACCAGCACCAGGAGGACGAGGTAGC
AGCCGGTCACAAAGCAGCAACAGCAGCAGCGACAACATCGACAGCAGTTA
TTGCAGAAAAGAAGACGCATGGACTTGAATCGTATCCCCGGGCGGCGGAG
GACGGAATGGGGGAAAGGGCAGAGGGAGGAAGCATGGCAGTCGACGGCCC
TGATCCTGCCAAGAGCAAAAGCGGGAACACCAGCAGCGGCAGCAGCAGCG
GCAGCAGCAGCAGCAGTCATGGAGCTGCCAACTCTTCCCTCTCTCCCTTT
CAATCCACTTACACGTCAAGCAACAACCAGCCCCTGCCCTCCCTCGATCG
CGCCCTCGGCCAGACCCCGTTCGCCCTCCCTCTCTCCCTTCCCGCCTCAT
CATCCCCTTCTTCCTCCGCCTCCTCCTCCTTGGTAGAACCGAAGAAGAAA
CGATCCAATGAAGAGAGCAAAGCCGTCGATGCCCTCTTGTCTCTGTTGGG
AAACGCGGCAGGAGGGGAGGGAGGGATGGAGGGCCTAGCCGTGCAGCTCG
CCTTGGGGGCCCCTAGTGGGGGTGGCAACCTGAGAGCAGCAGCGGCAGCA
GCAGCGGCATTGGTGGACAAGAGGATCAAGATGTAG
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protein sequence of NO18G02390.1

>NO18G02390.1-protein ID=NO18G02390.1-protein|Name=NO18G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=689bp
MSTPAWGEEVARRLSALKKQQEEEEGKEGEEEYIPEDEDEASDDESEYDE
EESNSEGSGSGGRRGKGRRASAGRRSNRGKGGKGGAGGIYVVEEEEEKDW
MMGPDGVRRRRKQLTQKWTQEEDSLLTELVLQHGQRDWGLVASHMPGTHR
KGKQCRERWRNQLDPNIKRDPWTAEEERTLIDAHARWGNKWADIAKLLPG
RTDNAIKNHWNTARRKTTKRDPNATRPSSRHHHGRALHLPPPPAFGPPHP
YTHPSHPPPPHFLHHHPLPTHGLPLLPPRPPSLTHHHHQQLIQQQHHQQH
PYSPNSHPHPPPYMQGHFSHPHPPPPLHLQQQFLPPPPPDHHYHHPQQLQ
QQQHEKQQHPQHQHLHHLHQHAQHQHHQQEHVPPPPPPPQTSEGQYHRLA
EFHKTIHGPPSLPPSLPPSTPRPHEWASAEQQQQEQQQQQQLPPSTPSYQ
RSTYSPREEGGREEGQKHSSLPSLLYDGQQQQQHQHQHQEDEVAAGHKAA
TAAATTSTAVIAEKKTHGLESYPRAAEDGMGERAEGGSMAVDGPDPAKSK
SGNTSSGSSSGSSSSSHGAANSSLSPFQSTYTSSNNQPLPSLDRALGQTP
FALPLSLPASSSPSSSASSSLVEPKKKRSNEESKAVDALLSLLGNAAGGE
GGMEGLAVQLALGAPSGGGNLRAAAAAAAALVDKRIKM*
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Synonyms
Publications