NO18G02380, NO18G02380 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO18G02380 vs. NCBI_GenBank
Match: EJK68284.1 (hypothetical protein THAOC_10549, partial [Thalassiosira oceanica]) HSP 1 Score: 132.1 bits (331), Expect = 2.200e-27 Identity = 73/180 (40.56%), Postives = 116/180 (64.44%), Query Frame = 0 Query: 1 MKPVCLLSLLVAGAAAFHMPLSSRQPHTKLNAGS-AYVSTRTGKEERLEQYKGWLEGAEMIFAIPAQGMTVKQVAQLRKAVPQDTKVRVAKNTILKRAIEGNSQWEVVGDKLESSNMWFFVGSDMKGTFDGYEAFLKENKALKESHTFRFGAMDGTLLDTEGVQKISKLPGKLDLYTKLA 180 MK +L + AG AAF P + +P T L G+ +T GK+ + K L+ +EM+F +PA G+TV QV LR+++P+ T +V KN ++ RAIEG +++E V + L+ +NMWFF+ D+ G+ ++ F+K+ +AL ESH+ G ++GT DT GV++ISKLP K++L T++A Sbjct: 126 MKQSLVLLGMAAGCAAF-APAPAERPQTSLYGGAQGGATTLEGKKNTVSAVKELLDSSEMVFTVPASGITVAQVQGLRRSLPEGTTAKVVKNKLMSRAIEG-TEYEPVNEMLKGANMWFFIEEDIGGSVKSWKKFVKD-EALAESHSILGGNIEGTNYDTAGVEQISKLPSKIELITQIA 302
BLAST of NO18G02380 vs. NCBI_GenBank
Match: XP_002288521.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93957.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 123.6 bits (309), Expect = 7.600e-25 Identity = 75/186 (40.32%), Postives = 115/186 (61.83%), Query Frame = 0 Query: 1 MKPVCLLSLLVAGAAAFH-MPLSSRQPHTKLNAGS-AYVSTRTGKEERLEQYKGWLEGAEMIFAIPAQGMTVKQVAQLRKAVPQDTKVRVAKNTILKRAIEGNSQWEVVGDK-LESSNMWFFVGSDMKGTFDGYEAFLKENKALKESHTFRFGAMDGTLLDTEGVQKISKLPGKLDLYTKLAFALK 184 MK +L LVA AAAF +P +S T L G+ +T GK+ + K L+ +EM+F +PA G+TV +V LR+ +P+ T V+V KN ++ RAIEG +++ +GD+ L +NMWFF+ D+ GT + F+KE LK++H+ G ++G DT+GV ISKLP K++L ++A A+K Sbjct: 1 MKQSVVLMSLVASAAAFSPVPQASSTSSTALFGGARGGATTLDGKKATVTHVKELLDSSEMVFTVPASGITVSKVQGLRRNLPEGTTVKVVKNKLMARAIEG-TEYAPIGDQFLTGANMWFFIEEDIGGTVKTWNQFVKE-AGLKDTHSILGGNIEGVNYDTKGVDAISKLPSKMELIAQIAGAVK 184
BLAST of NO18G02380 vs. NCBI_GenBank
Match: GAX22330.1 (large subunit ribosomal protein L10 [Fistulifera solaris]) HSP 1 Score: 123.2 bits (308), Expect = 1.000e-24 Identity = 68/183 (37.16%), Postives = 108/183 (59.02%), Query Frame = 0 Query: 6 LLSLLVAGAAAF-HMPLSSRQPHTKL----NAGSAYVSTRTGKEERLEQYKGWLEGAEMIFAIPAQGMTVKQVAQLRKAVPQDTKVRVAKNTILKRAIEGNSQWEVVGDKLESSNMWFFVGSDMKGTFDGYEAFLKENKALKESHTFRFGAMDGTLLDTEGVQKISKLPGKLDLYTKLAFALK 184 L L + AAAF + P S + L GS ++ GK+ ++ KG L+ +EM+F IPA +TV ++ +LR+++P+ T V+V KNT+++RA+EG + +EV L +N+WFF+ D+ T Y FLK+ K++H G +G DT+GV+ I KLP K +LY K+A ++K Sbjct: 6 LFILFIGSAAAFSNQPWGSSTRSSTLQPLFGGGSGVATSLEGKKSTVQTVKGLLQDSEMVFTIPASSITVAEMQKLRRSMPEGTTVKVVKNTLMERAVEG-TDYEVATSLLTGANLWFFIEDDISATIKAYNGFLKD-CGKKDTHPILGGVTEGISYDTKGVEAIGKLPSKQELYAKIAGSIK 186
BLAST of NO18G02380 vs. NCBI_GenBank
Match: GAX10262.1 (large subunit ribosomal protein L10 [Fistulifera solaris]) HSP 1 Score: 122.1 bits (305), Expect = 2.200e-24 Identity = 67/183 (36.61%), Postives = 105/183 (57.38%), Query Frame = 0 Query: 6 LLSLLVAGAAAFH-----MPLSSRQPHTKLNAGSAYVSTRTGKEERLEQYKGWLEGAEMIFAIPAQGMTVKQVAQLRKAVPQDTKVRVAKNTILKRAIEGNSQWEVVGDKLESSNMWFFVGSDMKGTFDGYEAFLKENKALKESHTFRFGAMDGTLLDTEGVQKISKLPGKLDLYTKLAFALK 184 L L V AAAF + S GS ++ GK+ ++ KG L+ +EM+F IPA +TV ++ +LR+++P+ T V+V KNT+++RA+EG + +EV L +N+WFF+ D+ T Y FLK+ K++H G +G DT+GV+ I KLP K +LY K+A ++K Sbjct: 6 LFILFVGSAAAFSTQPWGSSIRSSTLQPLFGGGSGIATSLEGKKSTVQTVKGLLQDSEMVFTIPASSITVAEMQKLRRSMPEGTTVKVVKNTLMERAVEG-TDYEVATSLLTGANLWFFIEDDISATIKAYNGFLKD-CGKKDTHPILGGVTEGISYDTKGVEAIGKLPSKQELYAKIAGSIK 186
BLAST of NO18G02380 vs. NCBI_GenBank
Match: OEU13664.1 (hypothetical protein FRACYDRAFT_162264, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 120.9 bits (302), Expect = 5.000e-24 Identity = 62/165 (37.58%), Postives = 103/165 (62.42%), Query Frame = 0 Query: 43 KEERLEQYKGWLEGAEMIFAIPAQGMTVKQVAQLRKAVPQDTKVRVAKNTILKRAIEGNSQWEVVGDKLESSNMWFFVGSDMKGTFDGYEAFLKENKALKESHTFRFGAMDGTLLDTEGVQKISKLPGKLDLYTKLAFALKQPGTRLGKSLKAIPTKLTRAIKLS 208 K E++ Q KG L+ ++MIF +PA ++VK+ LR+++P+ T + V KNT++ +A+EG + +EV L+ +NMWFF+ D+ T + F KE + E+H G ++G D +G I KLP K +LY ++A A++ T++ + +KA +KL RAIKL+ Sbjct: 1 KTEKVAQVKGLLDSSQMIFTVPASSVSVKESQILRRSMPEGTTISVVKNTLMTKAVEG-TDYEVATSLLKGANMWFFIEEDIGATIKAFNQFTKETGKM-ETHEISGGIIEGVEYDAKGCIAIGKLPSKKELYGQIAGAIQAVPTKVARVIKAPNSKLARAIKLA 163
BLAST of NO18G02380 vs. NCBI_GenBank
Match: XP_002182524.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45811.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 114.4 bits (285), Expect = 4.600e-22 Identity = 57/154 (37.01%), Postives = 90/154 (58.44%), Query Frame = 0 Query: 30 LNAGSAYVSTRTGKEERLEQYKGWLEGAEMIFAIPAQGMTVKQVAQLRKAVPQDTKVRVAKNTILKRAIEGNSQWEVVGDKLESSNMWFFVGSDMKGTFDGYEAFLKENKALKESHTFRFGAMDGTLLDTEGVQKISKLPGKLDLYTKLAFALK 184 + Y ++ GK+ + + + L+ ++M+F IPA +TV Q LR+++P T V++ KN ++ RA+EG + + V L+ +N WFF+ D+ GT Y AFLK N +ESH G ++G D GV+ I KLP K DLY K+A ++K Sbjct: 1 MGGAQGYATSLEGKKNTVTKVQSLLDSSQMVFTIPAGSITVAQTQALRRSMPSGTTVQIVKNKLMARAVEG-TDYAVATSLLQGANAWFFIEEDIGGTLKAYNAFLK-NFGKRESHPILGGVIEGNTYDAAGVEAIGKLPSKQDLYAKIAGSIK 152
BLAST of NO18G02380 vs. NCBI_GenBank
Match: XP_010693095.1 (PREDICTED: 50S ribosomal protein L10, chloroplastic [Beta vulgaris subsp. vulgaris] >KMS99315.1 hypothetical protein BVRB_2g045880 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 107.5 bits (267), Expect = 5.700e-20 Identity = 65/187 (34.76%), Postives = 102/187 (54.55%), Query Frame = 0 Query: 20 PLSSRQPHTKLNAGSAYVSTRTGKEERLEQYKGWLEGAEMIFAIPAQGMTVKQVAQLRKAVPQDTKVRVAKNTILKRAIEGNSQWEVVGDKLESSNMWFFVGS-DMKGTFDGYEAFLKENKALKESHTFRFGAMDGTLLDTEGVQKISKLPGKLDLYTKLAFALKQPGTRLGKSLKAIPTKLTRAIK 206 P + ++P + +A +RT KEE +E K LE ++ AI +G TVKQ +LRKA+P+ TK+ VAKNT++++A+E N+QWE + ++ N W FV + ++ G Y F KE K E + F +G E + + +P + D+Y KL +LK PG L +L+A L +K Sbjct: 34 PTTHKKPTSNFTITAAI--SRTKKEETVETVKSHLENCYLVAAINYKGFTVKQFQELRKALPETTKLVVAKNTLVEKAVE-NTQWEAIKPCMKGMNAWLFVHTEEIPGALKPYRTFQKEKKL--EDNDFTGACFEGKFYGPEDFKGLETMPSRADVYAKLLGSLKTPGIALVGTLQAPARDLVLVLK 215
BLAST of NO18G02380 vs. NCBI_GenBank
Match: CAH25357.1 (50S ribosomal protein L10 [Guillardia theta]) HSP 1 Score: 104.8 bits (260), Expect = 3.700e-19 Identity = 67/189 (35.45%), Postives = 108/189 (57.14%), Query Frame = 0 Query: 1 MKPVCLLSLLVAGAAAFHMPLSSRQPHTKLNAGSAYVSTRTG-----KEERLEQYKGWLEGAEMIFAIPAQGMTVKQVAQLRKAVPQDTKVRVAKNTILKRAIEGNSQWEVVGDKLE-SSNMWFFVGSDMKGTFDGYEAFLKENKALKESHTFRFGAMDGTLLDTEGVQKISKLPGKLDLYTKLAFALK 184 MK +CL + VA AAAF L S Q ++ + +A + G K++ ++Q L ++ IF+ + +TV Q+ +LR ++P+D+K KN +LKRA G ++WEVV D + S N+W FVGSD+KGT ++A+ K+ K + G ++G + D +GV I LP K +LY ++A +K Sbjct: 1 MKKLCLFAAAVASAAAFAPGLPSAQ---RVPSKAALTNLHMGKNIYEKKDIVKQVSEDLASSQFIFSTEMKQITVPQIRELRWSLPEDSKASCIKNRLLKRAAAG-TEWEVVKDAAKGSDNLWVFVGSDIKGTIKAFKAWAKKEKKAGA----KAGVLEGRIYDEKGVDAIGDLPSKDELYAQIAGCVK 181
BLAST of NO18G02380 vs. NCBI_GenBank
Match: WP_013322791.1 (50S ribosomal protein L10 [Cyanothece sp. PCC 7822] >ADN14686.1 ribosomal protein L10 [Cyanothece sp. PCC 7822]) HSP 1 Score: 101.3 bits (251), Expect = 4.100e-18 Identity = 55/176 (31.25%), Postives = 100/176 (56.82%), Query Frame = 0 Query: 39 TRTGKEERLEQYKGWLEGAEMIFAIPAQGMTVKQVAQLRKAV-PQDTKVRVAKNTILKRAIEGNSQWEVVGDKLESSNMWFFVGSDMKGTFDGYEAFLKENKALKESHTFRFGAMDGTLLDTEGVQKISKLPGKLDLYTKLAFALKQPGTRLGKSLKAIPTKLTRAIKLSFEEGAG 214 TR KEE + +KG L+ +++ I QG+TV ++ LR+ + P ++AKNT+++ A++G+ +W+V+ + L+ S+ V D+ G Y+AF K++K + R G M+G L + V+ ++ LP K LY ++A AL T++ +K +P+ + R I+ E+ G Sbjct: 4 TRENKEEVVADFKGLLKESQLAVVIDYQGLTVAEITDLRRRLRPLGGTCKIAKNTLVRIAVDGDEKWQVMHEHLKGSSAILLVPEDVGGAVKAYKAFQKDSKKTE----LRGGVMEGRSLTKDQVEALADLPTKEQLYAQIAGALNALATKIAVGIKEVPSSIARGIQAYSEKEEG 175
BLAST of NO18G02380 vs. NCBI_GenBank
Match: XP_022877795.1 (50S ribosomal protein L10, chloroplastic [Olea europaea var. sylvestris] >XP_022877796.1 50S ribosomal protein L10, chloroplastic [Olea europaea var. sylvestris]) HSP 1 Score: 97.8 bits (242), Expect = 4.500e-17 Identity = 61/182 (33.52%), Postives = 97/182 (53.30%), Query Frame = 0 Query: 39 TRTGKEERLEQYKGWLEGAEMIFAIPAQGMTVKQVAQLRKAVPQDTKVRVAKNTILKRAIEGNSQWEVVGDKLESSNMWFFVGS-DMKGTFDGYEAFLKENKALKESHTFRFGAMDGTLLDTEGVQKISKLPGKLDLYTKLAFALKQPGTRLGKSLKAIPTKLTRAI-----KLSFEEGAGE 215 TRT KEE +E+ K LE ++ I +G TVKQ +LR +P++TK+ VAKNT++ +AIEG ++WE + ++ N WFFV S ++ Y F KE K + + F +G + + + LP + ++Y KL LK P + + +++A L + KL E GAG+ Sbjct: 58 TRTKKEETVEKVKQELENCHLLAGISYKGFTVKQFQELRTQLPENTKLLVAKNTLVYKAIEG-TKWEALKPCMQGMNAWFFVHSEEIPAALKPYRTFQKEQKL--DDNEFTGAVFEGKFYGPDEFKALENLPTRAEIYAKLLGGLKGPASAVVGTIQAPARDLVMLLKAYCKKLEEESGAGQ 236 The following BLAST results are available for this feature:
BLAST of NO18G02380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO18G02380 ID=NO18G02380|Name=NO18G02380|organism=Nannochloropsis oceanica|type=gene|length=2876bpback to top protein sequence of NO18G02380.1 >NO18G02380.1-protein ID=NO18G02380.1-protein|Name=NO18G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bpback to top Synonyms
Publications
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