NO18G02370, NO18G02370 (gene) Nannochloropsis oceanica

Overview
NameNO18G02370
Unique NameNO18G02370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2147
Alignment locationchr18:768028..771265 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:768028..771265 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
Vocabulary: INTERPRO
TermDefinition
IPR024934Rubredoxin-like_dom
Homology
[Close]
BLAST of NO18G02370 vs. NCBI_GenBank
Match: EWM23446.1 (hypothetical protein Naga_101389g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 180.3 bits (456), Expect = 1.100e-41
Identity = 91/110 (82.73%), Postives = 100/110 (90.91%), Query Frame = 0 
Query:  140 KGEEGRE--DEGKMLELFKAGGAVILAAIGPNPWDRGMGINPTPPNALAIWGPYVGTLLFLTFGMRGLEPLKRFLYDRQKRRKQAKKAAQRPKKKNQYYRTPSRLYDMAK 248
            KG  GRE  + G ++EL KA  AV+LAAIGPNPWDRG+GINPTPP+ALA+WGPYVGTLLFLTFGMRGLEPLKRFLYDRQKRRKQAKKAAQ+P KKNQYYRTPSRLYD+AK
Sbjct:  127 KGLPGREEGEGGNVVELLKASSAVLLAAIGPNPWDRGLGINPTPPSALAMWGPYVGTLLFLTFGMRGLEPLKRFLYDRQKRRKQAKKAAQKP-KKNQYYRTPSRLYDLAK 235
[Close]
BLAST of NO18G02370 vs. NCBI_GenBank
Match: EWM23447.1 (hypothetical protein Naga_101389g1 [Nannochloropsis gaditana])

HSP 1 Score: 180.3 bits (456), Expect = 1.100e-41
Identity = 91/110 (82.73%), Postives = 100/110 (90.91%), Query Frame = 0 
Query:  140 KGEEGRE--DEGKMLELFKAGGAVILAAIGPNPWDRGMGINPTPPNALAIWGPYVGTLLFLTFGMRGLEPLKRFLYDRQKRRKQAKKAAQRPKKKNQYYRTPSRLYDMAK 248
            KG  GRE  + G ++EL KA  AV+LAAIGPNPWDRG+GINPTPP+ALA+WGPYVGTLLFLTFGMRGLEPLKRFLYDRQKRRKQAKKAAQ+P KKNQYYRTPSRLYD+AK
Sbjct:  127 KGLPGREEGEGGNVVELLKASSAVLLAAIGPNPWDRGLGINPTPPSALAMWGPYVGTLLFLTFGMRGLEPLKRFLYDRQKRRKQAKKAAQKP-KKNQYYRTPSRLYDLAK 235
[Close]
BLAST of NO18G02370 vs. NCBI_GenBank
Match: XP_005758556.1 (hypothetical protein EMIHUDRAFT_219448 [Emiliania huxleyi CCMP1516] >EOD06127.1 hypothetical protein EMIHUDRAFT_219448 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 74.7 bits (182), Expect = 6.800e-10
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 0 
Query:  288 LSAYRCEVCSFTIYPARGREFKFFPAGFKCPSCGSSKEKFYDLTDPEDPRNQEVR 343
            L  ++CE CSFTI+PARGRE KFFP  +KC SCG+ KE F+D+   +DPR  E R
Sbjct:  138 LHEFQCEKCSFTIFPARGREGKFFPDDYKCQSCGAPKEAFFDMNSLDDPRAIEAR 192
[Close]
BLAST of NO18G02370 vs. NCBI_GenBank
Match: XP_005829016.1 (hypothetical protein GUITHDRAFT_153652 [Guillardia theta CCMP2712] >EKX42036.1 hypothetical protein GUITHDRAFT_153652 [Guillardia theta CCMP2712])

HSP 1 Score: 73.9 bits (180), Expect = 1.200e-9
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 0 
Query:  288 LSAYRCEVCSFTIYPARGREFKFFPAGFKCPSCGSSKEKFYDLTDPEDPRNQE 341
            L  + C  C + + PARGRE KFFP  FKCP CG+ KE+F+D  DP DPRNQE
Sbjct:   94 LHVFACGGCGYEMMPARGREGKFFPDKFKCPICGAGKEEFWDKNDPNDPRNQE 146
[Close]
BLAST of NO18G02370 vs. NCBI_GenBank
Match: CEM35446.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 73.2 bits (178), Expect = 2.000e-9
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 0 
Query:  288 LSAYRCEVCSFTIYPARGREFKFFPAGFKCPSCGSSKEKFYDLTDPEDPRNQEVRPG 345
            L  + CE C +TI+PARGRE KFF   F+CP CG+ KE FYD  DP+DP N+    G
Sbjct:  139 LHRFTCENCGYTIFPARGREGKFFGDDFECPVCGAKKEHFYDGNDPDDPHNKAPEEG 195
[Close]
BLAST of NO18G02370 vs. NCBI_GenBank
Match: XP_005534879.1 (hypothetical protein CYME_CMJ143C [Cyanidioschyzon merolae strain 10D] >BAM80272.1 hypothetical protein CYME_CMJ143C [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 66.6 bits (161), Expect = 1.800e-7
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 0 
Query:  288 LSAYRCEVCSFTIYPARGREFKFFPAGFKCPSCGSSKEKFYDL 331
            L  YRC  C +T+YPARGRE KFFP  FKCP C + K +F+DL
Sbjct:  183 LHVYRCGKCGYTLYPARGRELKFFPRTFKCPQCSAPKSEFWDL 225
[Close]
BLAST of NO18G02370 vs. NCBI_GenBank
Match: XP_005705324.1 (hypothetical protein isoform 1 [Galdieria sulphuraria] >XP_005705325.1 hypothetical protein isoform 2 [Galdieria sulphuraria] >EME28804.1 hypothetical protein isoform 1 [Galdieria sulphuraria] >EME28805.1 hypothetical protein isoform 2 [Galdieria sulphuraria])

HSP 1 Score: 64.7 bits (156), Expect = 7.000e-7
Identity = 24/42 (57.14%), Postives = 33/42 (78.57%), Query Frame = 0 
Query:  288 LSAYRCEVCSFTIYPARGREFKFFPAGFKCPSCGSSKEKFYD 330
            L  ++C  C ++++PA+GREFKFF   FKCP+CGS+KE FYD
Sbjct:  153 LHVFKCANCGYSLFPAKGREFKFFTDSFKCPACGSTKEAFYD 194
The following BLAST results are available for this feature:
BLAST of NO18G02370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM23446.11.100e-4182.73hypothetical protein Naga_101389g1, partial [Nanno... [more]
EWM23447.11.100e-4182.73hypothetical protein Naga_101389g1 [Nannochloropsi... [more]
XP_005758556.16.800e-1058.18hypothetical protein EMIHUDRAFT_219448 [Emiliania ... [more]
XP_005829016.11.200e-958.49hypothetical protein GUITHDRAFT_153652 [Guillardia... [more]
CEM35446.12.000e-954.39unnamed protein product [Vitrella brassicaformis C... [more]
XP_005534879.11.800e-760.47hypothetical protein CYME_CMJ143C [Cyanidioschyzon... [more]
XP_005705324.17.000e-757.14hypothetical protein isoform 1 [Galdieria sulphura... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02370.2NO18G02370.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO18G02370.1NO18G02370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101389g1gene7009Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02370.2NO18G02370.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO18G02370.1NO18G02370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02370 ID=NO18G02370|Name=NO18G02370|organism=Nannochloropsis oceanica|type=gene|length=2147bp
ACAGGCGGCATATCAAAGTGCAAGACAAGGACCACCACCACCAATCTATT
TTGCCTGTTTGGCTTCGTCGCCCCTCCGCCTTGTATCCTCAAGCCTCCCC
TCTCCCATCCTACGCATCATCCATGGCTGCGAGGACAAGCGCCAGGAGAA
GGAGGAGACTACAATCATCACTGCCCATCCTCGTGCTGAGCCTCGCCCTC
GTCCTTCTCCTCCCCACCATCACCTGTGCCTTTGTCCTCCCCCTCCGTTC
TTCCAGCTTGAACCTGGGCTTGAGAAGACCTCACGCAGCAGTGACAGGAG
TAGGATCACCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCGGAAGCA
ACACAGCTATATTGCGCCCACCAAGACCACAATCATTACCATGAACAAGT
GGAAGAAGCGCAGGCTTCCGAGgtacgatttttgttgtggaccctttcgt
ccctccctccctcactccttccttttcccctctctttacccctcatcgtt
tccctccactcaaccgaacaaaccccacacttcagACCGGCCGCAGTCGT
ATCCGGAAACGCGACGTGCTCTTTGCCCGCCTCCCGGCACCATGGGCTCG
CTTTCGTCAACAGGACCGACGCCTAGGAGTAACGGCATTTCAAAACGAGG
AGAAGGGGGAGGAAGGGAGGGAGGACGAGGGGAAGATGTTGGAGCTTTTC
AAGGCTGGTGGTGCTGTAATATTGGCGGCTATTGGCCCGAATCCTTGGGA
CAGgcaagtgttaacacctcccttcctcactccctccctccctccctccc
ctccctccctcccttccttcctccctccctccctcccctccctccctccc
tttctccctccatccctccctaactctgaccccatccttccttgttcccc
ctctccctccctcctcgcccctccacagAGGCATGGGCATAAATCCTACT
CCACCCAATGCCCTGGCCATTTGGGGTCCCTATGTGGGCACGCTCCTCTT
CCTCACCTTTGGCATGCGCGGCCTCGAGCCGTTGAAACGGTTTTTATACG
ACCGGCAGAAGCGGAGGAAGCAGGCGAAGAAGGgtagggaggaaggaagg
agaggagaggaaggaagaccataaagacgacatatcacaccctctttttc
acttcgctccctttatccctccctcctctatcgacggcatttctcacact
ctcccctccctctctccctccctccctccctccctccctgtctagCTGCC
CAGAGGCCTAAGAAAAAGAATCAGTATTACCGGACACCCTCGCGGCTCTA
CGACATGGCTAAGGCCAAGCTGGAGCAGAAGCAAGAAGGGGAGGTGAACG
CAGgtagggaggaaggaagggagggagggaaggagggaggggaggagggg
agggaggggagcttctgtgctcagagaagtaggggagaaaggaaaagaag
tatcggtatcggtagggagataacaggctagggagggaaagagaaaacga
gggggttaaaggaagaggcgtgaaaagtcaactgtgcaaattttccatcc
cgacagactccccgaacaaaccctccctccctccctcacaccctcctctt
cgtagCTCAAGCCAGCGCAGACGCCATCGCCGACGGAGAGGGAGGGGAGG
AGGAGGAGGAGGTGGAGGAGGAGGAGGAAGAGCAGCTGTCGGCCTACCGT
TGTGAAGTATGTTCCTTCACCATCTACCCCGCCCGAGGGCGCGAGTTTAA
ATTCTTCCCGGCCGGCTTCAAGTGCCCCTCGTGTGGGTCGAGCAAAGAGA
AATTTTATGATTTAACTGACCCGGAAGACCCCCGGAATCAGGAGGTACGG
CCCGGGAGGGAGGGAGGGGAGGGGAGGGAGAATCTAGTTCATCCGTTTTT
GTTTCTTCATCCTCTTCTTGTTCATGCGTTGAGTCCATCATTCTTTCTCT
GATGATCCCTTGTCTTGCATTTTTTCTCTAGTATGTTTTCCCCAATTGGA
TTTTTCTACTATGCTTTCTCTAATGGTTTTTCTCTGATTATATGTTCTTC
TCCAATATGTTTTTCTCTAATATGTTCTTCTCCAATACATATTTAACTAA
TAAGTTCTTCTCCAATATGTTTTTCTCTAATATGTTCTTCTCCAATA
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protein sequence of NO18G02370.2

>NO18G02370.2-protein ID=NO18G02370.2-protein|Name=NO18G02370.2|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MAARTSARRRRRLQSSLPILVLSLALVLLLPTITCAFVLPLRSSSLNLGL
RRPHAAVTGVGSPAAAAAATTAAAEATQLYCAHQDHNHYHEQVEEAQASE
TGRSRIRKRDVLFARLPAPWARFRQQDRRLGVTAFQNEEKGEEGREDEGK
MLELFKAGGAVILAAIGPNPWDRGMGINPTPPNALAIWGPYVGTLLFLTF
GMRGLEPLKRFLYDRQKRRKQAKKAAQRPKKKNQYYRTPSRLYDMAKAKL
EQKQEGEVNAAQASADAIADGEGGEEEEEVEEEEEEQLSAYRCEVCSFTI
YPARGREFKFFPAGFKCPSCGSSKEKFYDLTDPEDPRNQEVRPGREGGEG
RENLVHPFLFLHPLLVHALSPSFFL*
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protein sequence of NO18G02370.1

>NO18G02370.1-protein ID=NO18G02370.1-protein|Name=NO18G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MAARTSARRRRRLQSSLPILVLSLALVLLLPTITCAFVLPLRSSSLNLGL
RRPHAAVTGVGSPAAAAAATTAAAEATQLYCAHQDHNHYHEQVEEAQASE
TGRSRIRKRDVLFARLPAPWARFRQQDRRLGVTAFQNEEKGEEGREDEGK
MLELFKAGGAVILAAIGPNPWDRGMGINPTPPNALAIWGPYVGTLLFLTF
GMRGLEPLKRFLYDRQKRRKQAKKAAQRPKKKNQYYRTPSRLYDMAKAKL
EQKQEGEVNAAQASADAIADGEGGEEEEEVEEEEEEQLSAYRCEVCSFTI
YPARGREFKFFPAGFKCPSCGSSKEKFYDLTDPEDPRNQEGSGGSSDEAD
DDLGDDDAFNLSDDEDEERPHEGGTEGDGPWPPAVLAAEPGGVE*
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Synonyms
Publications