NO18G02330, NO18G02330 (gene) Nannochloropsis oceanica

Overview
NameNO18G02330
Unique NameNO18G02330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3905
Alignment locationchr18:755733..759637 -

Link to JBrowse

Properties
Property NameValue
DescriptionArginine-trna-protein transferase 1-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:755733..759637 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G02330 vs. NCBI_GenBank
Match: EWM23440.1 (hypothetical protein Naga_101245g1 [Nannochloropsis gaditana])

HSP 1 Score: 146.7 bits (369), Expect = 2.200e-31
Identity = 78/139 (56.12%), Postives = 98/139 (70.50%), Query Frame = 0 
Query:  166 PPLFPPPAVLAQYFRRLFQKITHLFRKEIKALAEADPREENLIELLRTLPEAVQEGHHETVHFLRRGWVNFQQKALEGLLFK--GGNAEGMEGGLXXXXXXXXXXXXXXALAMVRAHATQVEHHASMWVTKNNQEHLNQ 303
            PPLFPPP+V A + R+L+++ TH+F KEI+AL EADPREEN++EL+RTLPEAV EGHHETVH L+RGW   Q KALEGLL    GG  EG E         XXX     + A+ R+   +VE HA++WVTK ++EHL Q
Sbjct:  156 PPLFPPPSVFAGHLRQLWRRFTHIFHKEIEALTEADPREENILELIRTLPEAVSEGHHETVHSLKRGWAALQHKALEGLLVVGWGGGEEGAE---------XXXEGRGLSQAVWRSRVAEVEQHATLWVTKRSREHLEQ 285
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BLAST of NO18G02330 vs. NCBI_GenBank
Match: EWM26728.1 (arginine-trna-protein transferase 1 [Nannochloropsis gaditana])

HSP 1 Score: 125.9 bits (315), Expect = 4.000e-25
Identity = 73/214 (34.11%), Postives = 115/214 (53.74%), Query Frame = 0 
Query:  294 KNNQEHLNQALHYL---SFLSEQAAQALDGPSQLDLVERLLVTMRCATEGGLMPGADGRKKSMSPQQLKLVHSMQPVVMQMLERIEGELAGKGCRKDPRLHLLLAETLGFNLGSSRGLSAAVCLGQVKRMAHSIDVAVRDEPSLDSGLPYIIRGMYYLNCPIPLKSVAKARWCFVEALKVNPHSGRNLYFCGLGAYLEAHYDDAHHYYTAAQAL 505
            ++   HL   LH           A + L+   QL++ E L+  +R  T GG++P ADG    +S +Q  +V    P V+Q+++R+E         +D R+ L   E L + + ++  + AA  L    R+  +ID+ +   P L  G P+II+GM +LN P+P++SV KA+ CF  A +++  S RN YFCG+ AYLE  Y  AH Y+  A +L
Sbjct:  129 QHGNRHLESLLHLAGREKHKFSSALKELEHHVQLEVAEALIFNIRKHTNGGMLPSADGSSPKLSAEQRDVVIEYIPEVLQIMDRLEEH---GHHHRDARVSLYATEALSYEVSTTSLVKAAPLLA---RIFKNIDLMLAKSPELKGGAPFIIKGMMFLNAPMPVRSVRKAKECFQTAHQIDASSPRNNYFCGVAAYLEKDYARAHKYFAEALSL 336
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BLAST of NO18G02330 vs. NCBI_GenBank
Match: XP_005854733.1 (hypothetical protein NGA_0403800, partial [Nannochloropsis gaditana CCMP526] >EKU21622.1 hypothetical protein NGA_0403800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 124.0 bits (310), Expect = 1.500e-24
Identity = 57/84 (67.86%), Postives = 69/84 (82.14%), Query Frame = 0 
Query:  166 PPLFPPPAVLAQYFRRLFQKITHLFRKEIKALAEADPREENLIELLRTLPEAVQEGHHETVHFLRRGWVNFQQKALEGLLFKGG 250
            PPLFPPP+V A + R+L+++ TH+F KEI+AL EADPREEN++EL+RTLPEAV EGHHETVH L+RGW   Q KALEGLL   G
Sbjct:  124 PPLFPPPSVFAGHLRQLWRRFTHIFHKEIEALTEADPREENILELIRTLPEAVSEGHHETVHSLKRGWAALQHKALEGLLVGWG 207
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BLAST of NO18G02330 vs. NCBI_GenBank
Match: XP_005854443.1 (hypothetical protein NGA_0014302 [Nannochloropsis gaditana CCMP526] >EKU21909.1 hypothetical protein NGA_0014302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 65.9 bits (159), Expect = 4.900e-7
Identity = 36/116 (31.03%), Postives = 58/116 (50.00%), Query Frame = 0 
Query:  386 KDPRLHLLLAETLGFNLGSSRGLSAAVCLGQVKRMAHSIDVAVRDEPSLDSGLPYIIRGMYYLNCPIPLKSVAKARWCFVEALKVNPHSGRNLYFCGLGAYLEAHYDDAHHYYTAA 502
            ++ R+H+L+ E   +   SS+G+  A   G        +D  V   P+ D+G+P+I RG + L  P PL+ V KA   F  A +V P S RN +F G+  +    ++ A   +  A
Sbjct:  171 QNARIHVLMTEAYTYRT-SSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERA 285
[Close]
BLAST of NO18G02330 vs. NCBI_GenBank
Match: EWM26618.1 (arginine-trna-protein transferase 1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 65.9 bits (159), Expect = 4.900e-7
Identity = 36/116 (31.03%), Postives = 58/116 (50.00%), Query Frame = 0 
Query:  386 KDPRLHLLLAETLGFNLGSSRGLSAAVCLGQVKRMAHSIDVAVRDEPSLDSGLPYIIRGMYYLNCPIPLKSVAKARWCFVEALKVNPHSGRNLYFCGLGAYLEAHYDDAHHYYTAA 502
            ++ R+H+L+ E   +   SS+G+  A   G        +D  V   P+ D+G+P+I RG + L  P PL+ V KA   F  A +V P S RN +F G+  +    ++ A   +  A
Sbjct:  171 QNARIHVLMTEAYTYRT-SSKGILKAAVTGDGLTFMRLVDQIVSRHPTYDAGVPFIFRGAFLLAAPWPLRDVPKAVEAFESAWEVEPRSLRNNFFLGVSHFHAGSFEAARQAFERA 285
The following BLAST results are available for this feature:
BLAST of NO18G02330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM23440.12.200e-3156.12hypothetical protein Naga_101245g1 [Nannochloropsi... [more]
EWM26728.14.000e-2534.11arginine-trna-protein transferase 1 [Nannochlorops... [more]
XP_005854733.11.500e-2467.86hypothetical protein NGA_0403800, partial [Nannoch... [more]
XP_005854443.14.900e-731.03hypothetical protein NGA_0014302 [Nannochloropsis ... [more]
EWM26618.14.900e-731.03arginine-trna-protein transferase 1-like protein [... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL009nonsL009Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02330.1NO18G02330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|225754gene_8931Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101245g1gene7016Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02330.1NO18G02330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02330 ID=NO18G02330|Name=NO18G02330|organism=Nannochloropsis oceanica|type=gene|length=3905bp
AGCTATTGAAGGCCTTTCATCGAATTTCCTTTCAAGTCTTTCACACTTTC
CACGCCGTTGTTTTGAGAACCCTGTAATGCACGAAAATGTCCATATACAC
TCATGGAGTAGAGTAAGCTGCACCCCGAAAAAGACAGCCCTCCCGAAATT
TTCGGGCATCGGGGAATTGTAGTGTTCGATAACGCCCCCGCTTTGATGGG
ATTCTCTGCTTGACTTCACCTTTAACTAGCTGTCATACTGCTTTAGCGTA
ACCGTGGACACGTGCGTGCATTCTTGATTGCATTAAGAAGCAAACAGGCG
CGCAGTGTGTGGTCGAAAGCCATATGGCCCATCGCTCTCGCCCATGAGGT
TTTGGTAATATGTGATACACGCACGCGTCGGTATCGGCCTTCCTATTCGT
GTGCGACACTGAAGCGCGGCGCGCTCCCCCATACCAGGGTTTCGCTGTTG
CGTTGCGTGCGGACGTGATGGGGGTTGTCTCAGTGTTCTGTTGTCTGATG
AAGACATAAATGCGGTGTCTTTTCGGAAGGACTGCTGCAGGATAAGCACG
TGCGTATCGGTACGCTTGCATCAGCTCTCAGTAAATAAATCCCATGGGTT
TCACGCCCACACATCCCTTCACCAAGCCGCATTCACAATTCACCGCGGCA
GACACGACATCCACGACTACTACACCTGCAATTGTGCAGCTCTATGATTG
GTATCTAGGGTCCCGGGGCTTGGTGATGTGGCCTGGAAGTCAATCCTCCT
TATGTCGCAACATGAAGACATGCACTTTTGGCATCAAGCAAGTAATCGAA
AAATAGCACATATTCACATATTTCCTGGGGTACCGATCCGCCTTACTCCT
TCATGAACCCGCTCCCTCCACAGGCAAGCCCCCCTAAGGACGCAAGGAAG
GGAGCGCCACGCGACGCAGGGCTGCTCGAGCACGTGCACCCACCCCGCAG
CGCCCTCCTGCCCTCCCCTCCCTCCGCCCCCTTTGTTGCCCCCCTTCCCC
ACTGGACGCCAAGGCGGAACGTGCCAGAGGAAATGAAAATCACGGAGCCA
TCCACCAGTATAAGCACCAGCACACGCGCCATAGCCAGGCCCACATGTCG
CCACCTACGTGTACGACACTTCTTCCTCCTCTCCTTTCTCTGGCTTCTCC
TCTACCACGTCCAAGGATCTGAGGCTATCCTCGCCTCCCTCCTCAAGACC
GTCGCCACCATCACCCACTCCTCTCCCTCCTCCTCATCCACCACGTCTTC
ACCATCGCCTGACGCCAGCCCTCTCCTCTCCCTCCCGAAGCTAAACAAGT
GGCACAACCATCATCGCCGCCATCTCCAGCAGCACAGTCTCAATCCCCCC
CCCCTCTTTCCCCCTCCCGCCGTCCTGGCCCAATACTTCCGGCGACTCTT
TCAAAAAATCACTCACCTTTTTCGTAAGGAAATAAAGGCTTTGGCGGAAG
CCGATCCACGGGAGGAAAACCTTATTGAGCTGCTGCGCACCTTGCCAGAA
GCCGTTCAAGAGgtgaaagccctgccttcctccctcccttccttcatttc
tccccacctcctttctctcagtatactctccgcagccctcatctggacaa
aacaaattggtgacacctttctaacaacaacctcctctccctcccctccc
tcccctccctccctccctccctccctccctccctccagGGGCACCATGAG
ACCGTACATTTCCTCCGTCGCGGCTGGGTAAACTTTCAACAGAAGGCTCT
TGAAGGCCTGCTTTTCAAGGGCGGGAACGCGGAAGGGATGGAGGGAGGAT
TGTTGAGCGGGGGAGGAGGAGGAGGAGGGGGAGGAGGAAGACTGGCACTG
GCCATGGTGCGAGCACATGCGACACAAGTGGAGCATCATGCTTCCATGTG
GGTGACGAAGAATAACCAAGAGCATCTAAATCAGgtataggggattaggg
agggaggaagggagggagggggggaggtgacgttctaatttgacttcttg
tactcatgttttccccctccctcccttcctccttcagGCACTGCACTACC
TCTCCTTCCTCTCGGAGCAGGCGGCCCAGGCCCTCGACGGTCCCTCTCAG
CTCGATCTGGTGGAACGCCTGCTTGTCACGATGCGCTGTGCCACGGAGGG
AGGTCTCATGCCTGGGGCCGACGGACGGAAGgtagggagggagggaggga
gggagggagggagggagggaacggtcgacttaacgcctctcaccccgcca
tctcatccccccctccccacctccctccctcagAAAAGCATGAGTCCCCA
GCAGTTGAAGTTGGTCCATAGCATGCAGCCCGTGGTCATGCAGATGCTCG
AGAGAATCGAAGGGGAGCTGGCGGGTAAAGGCTGCAGGAAGGACCCGCGG
gtgagggggagggcgggagggagggcgggggggaaggaaagggtgccgac
ggagaacgggagaacggggggagagagagaagatcggaacgagaggccgc
gagagaggcccaggggtacatttgttttcctcgccctccatccttccctt
tctcaagatcctgaagctcaccctcaacccccccccccccctccctcccg
ccctccctatagCTCCACCTCCTCCTGGCCGAGACTTTGGGTTTCAACCT
CGGGTCCTCCCGTGGCCTCTCGGCGGCCGTTTGCTTGGGACAAGTAAAAC
GCATGGCCCATTCCATCGACGTGGCTGTGCGCGACGAACCGAGgtacctc
ccttcctcccaccctccctccttccctccctccctccttccttgctgtcc
cacacaaccgacgctcaccacaccccgccctccctccctccctctctccc
tccctccctccagCCTCGACTCGGGCCTTCCTTACATCATCCGCGGCATG
TACTACCTCAATTGCCCCATCCCGCTCAAGAGCGTGGCCAAAGCCCGATG
GTGCTTCGTGGAGGCGCTCAAGgtgaaggagggagggagggaaggaggga
gggcgaaccaacatctgttctctttcagtctcttccccccccatcaaatt
gggaggctgccttcacgttctcttgtcttccttccgccccgatcaacaac
acgctgactttctttccctccctcctttcctccttccctccatcagGTCA
ACCCCCACTCGGGCCGGAACTTGTATTTCTGCGGCCTGGGAGCCTATTTG
GAAGCTCATTATGACGATGCCCACCACTACTACACGGCTGCTCAAGCCCT
CCTCCCTgtacgcccgcccttcctcccttcctccctccctctttctgtct
ttctttcctctttttgtcgttttatattttattttttatttttatttttt
attaaaatgttgggtccctcgttctcaccctccctccctcgccctccctc
tctccctccttccctcccctgcttgcttgctcgcagGCTGAGATCAAACG
CGATGCCCAATACGCGTTTTTGGAGGTGGAGTGTAAAAAAGGCATGGCAC
TGATAAAGGAGAAGCAGCAGAAGAGGGAGAGACGGGGGGAGGAAGGGAGG
GAGGGAGGATGGGTGAGGAATGAGGCAGGGAGAGGAGGGGGGAAGGGGGG
GGAAGGGGGAAGATGGTGGTGGAAAGGAGGAGGGGGGCAGGGACGATTTC
TGTTGTAGGGAGGGAAGAAGGAGGGAAGGAGGGAGGGAGGGCACGTGTAA
CTTTGTATATGCTGTTTATTTGGATGGCACATGGGATGGGAGAGAAAAGA
GACATTGCTCTTCATTGCTCTTGGTCGTCTTATTCATACTTATATCCACA
CATATATATGTATATTATTATTTTCATATTACCCATTTGTTTCCATTATT
AATATCGGGGTGGAGGGTCCCTTATTTCTTCGATTGGGGAGGGTGGGAGG
GAGGG
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protein sequence of NO18G02330.1

>NO18G02330.1-protein ID=NO18G02330.1-protein|Name=NO18G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=580bp
MNPLPPQASPPKDARKGAPRDAGLLEHVHPPRSALLPSPPSAPFVAPLPH
WTPRRNVPEEMKITEPSTSISTSTRAIARPTCRHLRVRHFFLLSFLWLLL
YHVQGSEAILASLLKTVATITHSSPSSSSTTSSPSPDASPLLSLPKLNKW
HNHHRRHLQQHSLNPPPLFPPPAVLAQYFRRLFQKITHLFRKEIKALAEA
DPREENLIELLRTLPEAVQEGHHETVHFLRRGWVNFQQKALEGLLFKGGN
AEGMEGGLLSGGGGGGGGGGRLALAMVRAHATQVEHHASMWVTKNNQEHL
NQALHYLSFLSEQAAQALDGPSQLDLVERLLVTMRCATEGGLMPGADGRK
KSMSPQQLKLVHSMQPVVMQMLERIEGELAGKGCRKDPRLHLLLAETLGF
NLGSSRGLSAAVCLGQVKRMAHSIDVAVRDEPSLDSGLPYIIRGMYYLNC
PIPLKSVAKARWCFVEALKVNPHSGRNLYFCGLGAYLEAHYDDAHHYYTA
AQALLPAEIKRDAQYAFLEVECKKGMALIKEKQQKRERRGEEGREGGWVR
NEAGRGGGKGGEGGRWWWKGGGGQGRFLL*
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Synonyms
Publications