NO18G02320, NO18G02320 (gene) Nannochloropsis oceanica

Overview
NameNO18G02320
Unique NameNO18G02320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length609
Alignment locationchr18:754298..754906 +

Link to JBrowse

Properties
Property NameValue
DescriptionUncharacterised protein family SERF
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:754298..754906 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007513Uncharacterised_SERF
Homology
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BLAST of NO18G02320 vs. NCBI_GenBank
Match: XP_005854734.1 (hypothetical protein NGA_0403900 [Nannochloropsis gaditana CCMP526] >EKU21623.1 hypothetical protein NGA_0403900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 80.5 bits (197), Expect = 2.800e-12
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0 
Query:    1 MTRGNQREIDRARAAARAAKGRKGGNEGDPKLRQERDAKALQDKIAQ 48
            MTRGNQREIDRARAAARAAKGRK GNEGDPKLR ERDAKALQ+KIA+
Sbjct:    1 MTRGNQREIDRARAAARAAKGRKEGNEGDPKLRAERDAKALQEKIAK 47
The following BLAST results are available for this feature:
BLAST of NO18G02320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854734.12.800e-1291.49hypothetical protein NGA_0403900 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL009nonsL009Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02320.1NO18G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642205gene_8930Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02320.1NO18G02320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02320 ID=NO18G02320|Name=NO18G02320|organism=Nannochloropsis oceanica|type=gene|length=609bp
ATGACGCGTGGGAACCAGAGGGAGATCGATCGTGCACGAGCGGCGGCGCG
GGCGGCCAAGGGACGCAAGGGCGGGAATGAAGGGGACCCGAAGCTCCGCC
AGGAGAGgtgaggtttcgggagggagagagggatgaagataggaatggaa
acggagggaataaaaagatgttcacagtgtgtttctcgtgagtggagaga
gcgagtgtcgacctgtggagaagttgggagctggagggggatggggggga
aaggcaagggccaggactgttctagaaggaaaaagacgatcggttgtggt
gtgtgtgtgtgtgtgtgtatgtatgtatatgtgatttgctttctttaagt
atgcagttttcagggccaccaatccttccgttgtcatcatgtctcccttg
tccccctcatcttttccccctgtcgtacatgttttcttttttgggggggc
aattggacgtacagGGATGCCAAGGCACTCCAGGACAAGATTGCCCAGAA
ACAGAAGGCGAAAGCAGAGGCGGCGGCGGAAGGGGGAGGGAGTGGAGGAT
CGGGAGGAGGAGGGGAGAAGAAAAAGGAAAAGAACGCTTACACTGTGTTC
ATCAAGTAG
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protein sequence of NO18G02320.1

>NO18G02320.1-protein ID=NO18G02320.1-protein|Name=NO18G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MTRGNQREIDRARAAARAAKGRKGGNEGDPKLRQERDAKALQDKIAQKQK
AKAEAAAEGGGSGGSGGGGEKKKEKNAYTVFIK*
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Synonyms
Publications