NO18G02160, NO18G02160 (gene) Nannochloropsis oceanica

Overview
NameNO18G02160
Unique NameNO18G02160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2292
Alignment locationchr18:683206..685497 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:683206..685497 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G02160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02160.1NO18G02160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604465gene_8913Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02160.1NO18G02160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02160 ID=NO18G02160|Name=NO18G02160|organism=Nannochloropsis oceanica|type=gene|length=2292bp
ACAGGAAACATGGGGAACCGACGCCGCCAGGCTAGCAACATGCAGAAGGC
AGACAAGAAGAATGGTGGGCATAGCCCTGCCTACCGCCCTGCCCCATCGG
CTGCGGCCAGTATAATCCGCTCGGCGATTACCACCGGCGCGCATCTTGAC
CAAGAGACGCTGACGGGCCTGCAGCAGGCTGTGATGCAGGCACAGCGGAC
TTATAAAAAGGCCAAAGGTCAGAAGGGGCGCGGGAAGCGTACTGGAAGCG
TCGAGCCACCGGGCGAGGGTAAGAATAATGTGAAAGATATTACACCTGGA
GGCGAACTAGGGCCACAGAGCTTAGGAGAAGAGAGTGCTTTTATAGAGGG
GGTGGTGGAGCCCGTAGAGGAGCCGAAGGAGGAGAAGGAAGTGGGGGTGG
TAGAGGAGGAGAAGAAGACGGGAGAGGGGGTGGCGGTGGAGTGGAAGAAG
AAGGAGGAGGTGGCGGTGGAGGGGAAGAAGAAGGAGGAGGTGGCGGTGCA
AGGAAAGAAGAAGGAGGAGGTGGCGATGGTGCAGGAGGAGGAGAAGGAGG
AGGAGGAGGAGGAGGAGAAGGTGGTGGTTGGGGATGAAATGAAGAAGGAG
GAGGAGGTAGTGAAAGAAATGAAGAAGGAGCAGGAGGTGGTGGTGGTGGT
GGAGGAGGAGGAGGAGAAGAAGAAGGAGCAGGAGGAGGTGAACGAGAAGG
AGCAGAAGGAGGTGAACGAGAAAAAGAAGAAGGAGAAGGAAGTGGTGATA
GGAGTGGAAAAGATGAAGGAGGAGCAGGAGGAGCTTGTGATGGAGAGGAA
AGAAGAGCAGGAGGTGGTCGTGGCAGTGGAGGAGGAGAAGAAGGAGGAAG
AGGTGGACGAGGACAAGAAGGATGTCGTGGTGGAGGTGAAGAAGGAGGAG
ACGCAGATGGTGGTGGTGGTCAAGGACAAGAAAAAGGAGGAGGAGAAAGG
GAAAAAGAAGGAGGTAGTGGTGATGGTGGAGGAGAAGAAGGAGGAAGAGG
TGGACGAGGACAAGAAGGATGTCGTGGTGGAGGTGGAGAAGGAGGAGACG
CAGATGGTGGTGGTGGTCAAGGACAAGAAAAAGGAGGAGGAGAAAGGGAA
AAAGAAGGAGGTAGTGGTGATGGTGGAGGAGAAGAAGGAGGAGGAGGAGG
AGGTGGTGGTGTTTGAGGTTGAGAAGATGAATGAGCAGGTGGACAAGGAG
AAGGGGGAGGAAGAGGTGGAAGTAGGAGAGAAGAAGGAAAAGGAGCAGGA
TGAGGAGGTGGTGGTGGAGGAAGAGAGGAAGGAGGGGGGAATGGAGGAGG
AAAAGAGGGAGGGGGGGCAAGTGGTGGTGGTTGTAAAAGAGAAGGAGGTG
GTGATGGTGGTGGAGGAGGAGAAAAAGAAGAACAAAAAGGAAAAAAAGAA
TAAGAATAAAAAGAAGGTGGAGGAGGAGAAAAAGAAGGTGGTGATGGTTG
TGGAGGAGAAGAAGAAGAAGAAGAAAAAAAAAAAGAAAAAGAAGGAGGAG
GAGGAGAAGAAGAAGGAGGAGGAGGCGACGGTGGTAGTGGTGGAGGAGAC
GAAGAAGGAGGAGGAGGAGGAGGAGAAGGCAGGGGTAGAGAAAACGAATA
AAGGGAAGGTTGTTGTGATGATGAAAGAGGAGGAGGTGATGATCATGGAG
GAGACGAAGAAGGAAAAGCTGGTGGAGGTGGCTGTCGAGGAGGAGGAGGA
GGAGAAGAAGGAGGAGGAGGAGGTAGTTGAGGAGGGGAAGAAGAAGGAGC
AAGAGGTGGTGGAGCAGGAGAAGAAAAAAATGATGGAGGGGCAGAAGATG
GAGGAAGTGGTGGTACTAGTAGAGGAGGAAAAGAAGAAGGCGACGAACAT
CGCTAAGAAGATGGTGGCGATGGGGGTCCGGCTGAGTGGAAGCCTGCATG
CAGCATGCCAGAGGGCTCTCCGTGCGTTGAGACTCGTGAAGAAGGAGGAG
GAGGCGAAGGAAGTCGTAGAAGAGGAGACGAAGAATAAGGAGATGGTGGT
GGAGGAGGAGAAGAAGGAGGTGATGATAGAGGAGGAGAGGAGGAAGGAGG
TGGAGCAGGAGGTAGAAGAAGGGGTGGTACTGGAGGTGAAAGACGAGGAG
AAGAAGAACGAGGAGGCGAAAAGCTATTTCAGTTTCTTTACCACAAAGGT
GTCGGAGATGGGGGTCTGGTTGAGGAAGAGCCTGCATGCAACGTACCAGA
TGGCTCTTCATGCATTGAGATTCGTGGAGGCGGCTTTGCTCGGTATTGCG
CGACATGCGCATATTTAAAAGAAGAAGAAGAAGAAGAAGAAG
back to top

protein sequence of NO18G02160.1

>NO18G02160.1-protein ID=NO18G02160.1-protein|Name=NO18G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=753bp
MGNRRRQASNMQKADKKNGGHSPAYRPAPSAAASIIRSAITTGAHLDQET
LTGLQQAVMQAQRTYKKAKGQKGRGKRTGSVEPPGEGKNNVKDITPGGEL
GPQSLGEESAFIEGVVEPVEEPKEEKEVGVVEEEKKTGEGVAVEWKKKEE
VAVEGKKKEEVAVQGKKKEEVAMVQEEEKEEEEEEEKVVVGDEMKKEEEV
VKEMKKEQEVVVVVEEEEEKKKEQEEVNEKEQKEVNEKKKKEKEVVIGVE
KMKEEQEELVMERKEEQEVVVAVEEEKKEEEVDEDKKDVVVEVKKEETQM
VVVVKDKKKEEEKGKKKEVVVMVEEKKEEEVDEDKKDVVVEVEKEETQMV
VVVKDKKKEEEKGKKKEVVVMVEEKKEEEEEVVVFEVEKMNEQVDKEKGE
EEVEVGEKKEKEQDEEVVVEEERKEGGMEEEKREGGQVVVVVKEKEVVMV
VEEEKKKNKKEKKNKNKKKVEEEKKKVVMVVEEKKKKKKKKKKKKEEEEK
KKEEEATVVVVEETKKEEEEEEKAGVEKTNKGKVVVMMKEEEVMIMEETK
KEKLVEVAVEEEEEEKKEEEEVVEEGKKKEQEVVEQEKKKMMEGQKMEEV
VVLVEEEKKKATNIAKKMVAMGVRLSGSLHAACQRALRALRLVKKEEEAK
EVVEEETKNKEMVVEEEKKEVMIEEERRKEVEQEVEEGVVLEVKDEEKKN
EEAKSYFSFFTTKVSEMGVWLRKSLHATYQMALHALRFVEAALLGIARHA
HI*
back to top
Synonyms
Publications