NO18G02140, NO18G02140 (gene) Nannochloropsis oceanica

Overview
NameNO18G02140
Unique NameNO18G02140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length974
Alignment locationchr18:676604..677577 -

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Properties
Property NameValue
DescriptionAlpha-tubulin N-acetyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:676604..677577 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0071929alpha-tubulin acetylation
GO:0071929alpha-tubulin acetylation
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
GO:0005874microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0019799tubulin N-acetyltransferase activity
GO:0019799tubulin N-acetyltransferase activity
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR038746Atat
IPR007965Alpha-TAT
Homology
[Close]
BLAST of NO18G02140 vs. NCBI_GenBank
Match: EWM23424.1 (Alpha-tubulin N-acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 150.2 bits (378), Expect = 8.000e-33
Identity = 104/255 (40.78%), Postives = 134/255 (52.55%), Query Frame = 0 
Query:   18 TQCTAFRLEKSCIAQLPAPARAALDHLAQQSAHSQSLRGPISCTTRLLASDNHVVYLLTLPS-------PSSPSSLSTSSGVP-------------------------------------------------------RLLISLSSSXXXXXXXXACSPIGFLKLGRKHLFVSSPSGQVIEISPLCLLDFYISTPFQRHGLGASFLRAVLRHEGIANAPHLLAYDRPSERLLPFLAKHFGLHKYVPQHNHFVIFD 211
            T  TA R +K+ +A LP  A AA+D LA  SA +Q LR PIS    L ASD+H++Y+L   +       P S S LS+   VP                                                                XXXXXXXX    +G LKLG+KHL++++P GQ++E +P CLLDF+I++P+QR GLGAS LR  L HEGI + PH LA+DRPS RLLPFLAKHF L K+  QHNHF+++D
Sbjct:   18 TSYTALRFDKAALACLPPSACAAIDSLAACSARAQGLRRPISTIRSLQASDDHILYILASTASNVADTPPPSASFLSSPPFVPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLALGLLKLGQKHLYLTNPQGQLVETNPFCLLDFFIASPWQRKGLGASLLRLALSHEGI-SGPHCLAFDRPSPRLLPFLAKHFALKKHRAQHNHFLVYD 271
[Close]
BLAST of NO18G02140 vs. NCBI_GenBank
Match: XP_005855214.1 (hypothetical protein NGA_0112700 [Nannochloropsis gaditana CCMP526] >EKU21148.1 hypothetical protein NGA_0112700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 121.7 bits (304), Expect = 3.100e-24
Identity = 103/300 (34.33%), Postives = 132/300 (44.00%), Query Frame = 0 
Query:   16 PITQCTAFRLEKSCIAQLPAPARAALDHLAQQSAHSQSLRGPISCTTRLLASDNHVVYLLTLPS-------PSSPSSLSTSSGVP-------------------------------------------------------RLLISLSSSXXXXXXXXACSPIGFLKLGRKHLFVSSPSGQV-------------------------------------------IEISPLCLLDFYISTPFQRHGLGASFLRAVLRHEGIANAPHLLAYDRPSERLLPFLAKHFGLHKYVPQHNHFVIFD 211
            PI + T   + + C   LP  A AA+D LA  SA +Q LR PIS    L ASD+H++Y+L   +       P S S LS+   VP                                                                XXXXXXXX    +G LKLG+KHL++++P GQV                                           +E +P CLLDF+I++P+QR GLGAS LR  L HEGI + PH LA+DRPS RLLPFLAKHF L K+  QHNHF+++D
Sbjct:    3 PIRRNTLTYVNEPC---LPPSACAAIDSLAACSARAQGLRRPISTIRSLQASDDHILYILASTASNVADTPPPSASFLSSPPFVPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLALGLLKLGQKHLYLTNPQGQVRTCESKRTDHPAMSAPHIDMVSSADLPSPPYSLPPSLRLSLQLVETNPFCLLDFFIASPWQRKGLGASLLRLALSHEGI-SGPHCLAFDRPSPRLLPFLAKHFALKKHRAQHNHFLVYD 298
[Close]
BLAST of NO18G02140 vs. NCBI_GenBank
Match: XP_009828239.1 (hypothetical protein H257_05167 [Aphanomyces astaci] >ETV82570.1 hypothetical protein H257_05167 [Aphanomyces astaci])

HSP 1 Score: 118.6 bits (296), Expect = 2.600e-23
Identity = 56/97 (57.73%), Postives = 66/97 (68.04%), Query Frame = 0 
Query:  114 PIGFLKLGRKHLFVSSPSGQVIEISPLCLLDFYISTPFQRHGLGASFLRAVLRHEGIANAPHLLAYDRPSERLLPFLAKHFGLHKYVPQHNHFVIFD 211
            P G LK+GRKHLF S P G  IE+ PLC+LDFY+    QRHGLG     ++L  E +  APH LAYDRPS +L PFL KHF L  YVPQ N FV++D
Sbjct:   61 PWGVLKVGRKHLFYSKPRGGFIEMDPLCVLDFYVHPDRQRHGLGLHLFTSMLERESV--APHQLAYDRPSPKLFPFLRKHFKLDSYVPQSNRFVVYD 155
[Close]
BLAST of NO18G02140 vs. NCBI_GenBank
Match: XP_008867353.1 (hypothetical protein H310_04679 [Aphanomyces invadans] >ETW04397.1 hypothetical protein H310_04679 [Aphanomyces invadans])

HSP 1 Score: 110.2 bits (274), Expect = 9.200e-21
Identity = 51/95 (53.68%), Postives = 65/95 (68.42%), Query Frame = 0 
Query:  116 GFLKLGRKHLFVSSPSGQVIEISPLCLLDFYISTPFQRHGLGASFLRAVLRHEGIANAPHLLAYDRPSERLLPFLAKHFGLHKYVPQHNHFVIFD 211
            G LK+GRKHLF  +P G  +E+ PLC+LDF++    QRHGLG    +++L  E I  APH LAYDRPS +L  F+ KHFGL  +V Q N FVI+D
Sbjct:   63 GILKVGRKHLFYLTPRGDFMELDPLCVLDFFVHPQRQRHGLGLHLFKSMLERESI--APHQLAYDRPSPKLFSFMRKHFGLDTFVDQPNRFVIYD 155
[Close]
BLAST of NO18G02140 vs. NCBI_GenBank
Match: XP_016605887.1 (hypothetical protein SPPG_06843 [Spizellomyces punctatus DAOM BR117] >KNC97847.1 hypothetical protein SPPG_06843 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 109.0 bits (271), Expect = 2.100e-20
Identity = 64/169 (37.87%), Postives = 93/169 (55.03%), Query Frame = 0 
Query:   41 LDHLAQQSAHSQSLRGPISCTTRLLASDNHVVYLLTLPSPSSPSSLSTSSGVPRLLISLSSSXXXXXXXXACSPIGFLKLGRKHLFVSSPSGQVIEISPLCLLDFYISTPFQRHGLGASFLRAVLRHEGIANAPHLLAYDRPSERLLPFLAKHFGLHKYVPQHNHFVIF 210
            +D L   SA +Q LR P++ T +L ++ NH +Y++      + S+ S  SGV                      +G +KLG K+LFV    G+ ++ISPLC+LD Y+   +QR G G      +L  E     P  LAYDRPS RLL FL KH+GL++Y+PQ N+FV++
Sbjct:   19 IDELGVASAKAQGLRHPVTTTDKLQSNPNHRIYIMKHEEVCAGSN-SAVSGVLGTSDPFGEPHAMMTGRTNTKVVGMIKLGVKNLFVMDEFGRHLQISPLCVLDIYVHEAYQRKGYGKRLFDYMLMIE--MQRPGHLAYDRPSPRLLAFLKKHYGLYEYIPQVNNFVVY 184
[Close]
BLAST of NO18G02140 vs. NCBI_GenBank
Match: XP_020829896.1 (alpha-tubulin N-acetyltransferase 1 isoform X3 [Phascolarctos cinereus])

HSP 1 Score: 108.2 bits (269), Expect = 3.500e-20
Identity = 69/172 (40.12%), Postives = 90/172 (52.33%), Query Frame = 0 
Query:   41 LDHLAQQSAHSQSLRGPISCTTRLLASDNHVVYLL--TLPSPSSPSSLSTSSGVPRLLISLSSSXXXXXXXXACSPIGFLKLGRKHLFVSSPSGQVIEISPLCLLDFYISTPFQRHGLGASFLRAVLRHEGIANAPHLLAYDRPSERLLPFLAKHFGLHKYVPQHNHFVIFD 211
            +D L + SA +Q L GPI+  +R + S+ HV+Y+L  T   P+   ++                            IGFLK+G K LFV    G   E+ PLC+LDFYI    QRHG G    R +L  E +   PH LA DRPSE+LL FL KH+ L   VPQ N+FVIF+
Sbjct:   48 VDELGKASAKAQHLPGPITSASR-MQSNRHVMYVLKDTSARPAGKGAI----------------------------IGFLKVGYKKLFVLDDRGAHNEVEPLCILDFYIHESLQRHGHGLKLFRYMLEKERV--EPHQLAIDRPSEKLLRFLNKHYNLESTVPQVNNFVIFE 188
[Close]
BLAST of NO18G02140 vs. NCBI_GenBank
Match: XP_020829894.1 (alpha-tubulin N-acetyltransferase 1 isoform X1 [Phascolarctos cinereus])

HSP 1 Score: 108.2 bits (269), Expect = 3.500e-20
Identity = 69/172 (40.12%), Postives = 90/172 (52.33%), Query Frame = 0 
Query:   41 LDHLAQQSAHSQSLRGPISCTTRLLASDNHVVYLL--TLPSPSSPSSLSTSSGVPRLLISLSSSXXXXXXXXACSPIGFLKLGRKHLFVSSPSGQVIEISPLCLLDFYISTPFQRHGLGASFLRAVLRHEGIANAPHLLAYDRPSERLLPFLAKHFGLHKYVPQHNHFVIFD 211
            +D L + SA +Q L GPI+  +R + S+ HV+Y+L  T   P+   ++                            IGFLK+G K LFV    G   E+ PLC+LDFYI    QRHG G    R +L  E +   PH LA DRPSE+LL FL KH+ L   VPQ N+FVIF+
Sbjct:   48 VDELGKASAKAQHLPGPITSASR-MQSNRHVMYVLKDTSARPAGKGAI----------------------------IGFLKVGYKKLFVLDDRGAHNEVEPLCILDFYIHESLQRHGHGLKLFRYMLEKERV--EPHQLAIDRPSEKLLRFLNKHYNLESTVPQVNNFVIFE 188
[Close]
BLAST of NO18G02140 vs. NCBI_GenBank
Match: XP_020829904.1 (alpha-tubulin N-acetyltransferase 1 isoform X10 [Phascolarctos cinereus] >XP_020829905.1 alpha-tubulin N-acetyltransferase 1 isoform X10 [Phascolarctos cinereus] >XP_020829906.1 alpha-tubulin N-acetyltransferase 1 isoform X10 [Phascolarctos cinereus])

HSP 1 Score: 108.2 bits (269), Expect = 3.500e-20
Identity = 69/172 (40.12%), Postives = 90/172 (52.33%), Query Frame = 0 
Query:   41 LDHLAQQSAHSQSLRGPISCTTRLLASDNHVVYLL--TLPSPSSPSSLSTSSGVPRLLISLSSSXXXXXXXXACSPIGFLKLGRKHLFVSSPSGQVIEISPLCLLDFYISTPFQRHGLGASFLRAVLRHEGIANAPHLLAYDRPSERLLPFLAKHFGLHKYVPQHNHFVIFD 211
            +D L + SA +Q L GPI+  +R + S+ HV+Y+L  T   P+   ++                            IGFLK+G K LFV    G   E+ PLC+LDFYI    QRHG G    R +L  E +   PH LA DRPSE+LL FL KH+ L   VPQ N+FVIF+
Sbjct:    4 VDELGKASAKAQHLPGPITSASR-MQSNRHVMYVLKDTSARPAGKGAI----------------------------IGFLKVGYKKLFVLDDRGAHNEVEPLCILDFYIHESLQRHGHGLKLFRYMLEKERV--EPHQLAIDRPSEKLLRFLNKHYNLESTVPQVNNFVIFE 144
[Close]
BLAST of NO18G02140 vs. NCBI_GenBank
Match: XP_020829902.1 (alpha-tubulin N-acetyltransferase 1 isoform X8 [Phascolarctos cinereus])

HSP 1 Score: 108.2 bits (269), Expect = 3.500e-20
Identity = 69/172 (40.12%), Postives = 90/172 (52.33%), Query Frame = 0 
Query:   41 LDHLAQQSAHSQSLRGPISCTTRLLASDNHVVYLL--TLPSPSSPSSLSTSSGVPRLLISLSSSXXXXXXXXACSPIGFLKLGRKHLFVSSPSGQVIEISPLCLLDFYISTPFQRHGLGASFLRAVLRHEGIANAPHLLAYDRPSERLLPFLAKHFGLHKYVPQHNHFVIFD 211
            +D L + SA +Q L GPI+  +R + S+ HV+Y+L  T   P+   ++                            IGFLK+G K LFV    G   E+ PLC+LDFYI    QRHG G    R +L  E +   PH LA DRPSE+LL FL KH+ L   VPQ N+FVIF+
Sbjct:   47 VDELGKASAKAQHLPGPITSASR-MQSNRHVMYVLKDTSARPAGKGAI----------------------------IGFLKVGYKKLFVLDDRGAHNEVEPLCILDFYIHESLQRHGHGLKLFRYMLEKERV--EPHQLAIDRPSEKLLRFLNKHYNLESTVPQVNNFVIFE 187
[Close]
BLAST of NO18G02140 vs. NCBI_GenBank
Match: XP_020829909.1 (alpha-tubulin N-acetyltransferase 1 isoform X13 [Phascolarctos cinereus])

HSP 1 Score: 108.2 bits (269), Expect = 3.500e-20
Identity = 69/172 (40.12%), Postives = 90/172 (52.33%), Query Frame = 0 
Query:   41 LDHLAQQSAHSQSLRGPISCTTRLLASDNHVVYLL--TLPSPSSPSSLSTSSGVPRLLISLSSSXXXXXXXXACSPIGFLKLGRKHLFVSSPSGQVIEISPLCLLDFYISTPFQRHGLGASFLRAVLRHEGIANAPHLLAYDRPSERLLPFLAKHFGLHKYVPQHNHFVIFD 211
            +D L + SA +Q L GPI+  +R + S+ HV+Y+L  T   P+   ++                            IGFLK+G K LFV    G   E+ PLC+LDFYI    QRHG G    R +L  E +   PH LA DRPSE+LL FL KH+ L   VPQ N+FVIF+
Sbjct:   48 VDELGKASAKAQHLPGPITSASR-MQSNRHVMYVLKDTSARPAGKGAI----------------------------IGFLKVGYKKLFVLDDRGAHNEVEPLCILDFYIHESLQRHGHGLKLFRYMLEKERV--EPHQLAIDRPSEKLLRFLNKHYNLESTVPQVNNFVIFE 188
The following BLAST results are available for this feature:
BLAST of NO18G02140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23424.18.000e-3340.78Alpha-tubulin N-acetyltransferase [Nannochloropsis... [more]
XP_005855214.13.100e-2434.33hypothetical protein NGA_0112700 [Nannochloropsis ... [more]
XP_009828239.12.600e-2357.73hypothetical protein H257_05167 [Aphanomyces astac... [more]
XP_008867353.19.200e-2153.68hypothetical protein H310_04679 [Aphanomyces invad... [more]
XP_016605887.12.100e-2037.87hypothetical protein SPPG_06843 [Spizellomyces pun... [more]
XP_020829896.13.500e-2040.12alpha-tubulin N-acetyltransferase 1 isoform X3 [Ph... [more]
XP_020829894.13.500e-2040.12alpha-tubulin N-acetyltransferase 1 isoform X1 [Ph... [more]
XP_020829904.13.500e-2040.12alpha-tubulin N-acetyltransferase 1 isoform X10 [P... [more]
XP_020829902.13.500e-2040.12alpha-tubulin N-acetyltransferase 1 isoform X8 [Ph... [more]
XP_020829909.13.500e-2040.12alpha-tubulin N-acetyltransferase 1 isoform X13 [P... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02140.1NO18G02140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604459gene_8911Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02140.1NO18G02140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02140 ID=NO18G02140|Name=NO18G02140|organism=Nannochloropsis oceanica|type=gene|length=974bp
ATGGAGGGCGGCAATGGCGGCCTTATGCAGGACCAGTACCGCCCTCCGAT
CACTCAATGCACCGCCTTCCGCCTCGAAAAGTCATGCATTGgtacgtccc
atccctcctttctccacacaacccgctccatctcccttgctcttgtcaac
ctgctttcaaatactacaatattctatacagCACAACTCCCTGCCCCTGC
CCGCGCCGCTCTCGATCACCTGGCGCAGCAGTCAGCGCACTCCCAATCCC
TGCGCGGGCCCATCTCCTGCACTACCCGCCTCCTCGCCTCGGACAACCAT
GTCGTGTACCTCCTTACATTGCCCTCGCCCTCATCCCCTTCTTCTCTCTC
GACGTCCAGTGGTGTTCCTCGCCTACTCATCTCGTTGTCGTCTTCTTCCT
TGACTTCCTGCTCGTCCTCCGCTTGCTCCCCCATCGGCTTCCTCAAGTTG
GGGCGGAAGCACCTTTTCGTCTCTAGCCCTTCAGGCCAGgtaaaggagaa
agttgtgagaggggtgcattggagaaggaggagtgaagagggtgaaatag
gaggcacaagaattgattgcctccttaaggcacgaatgccagctttagaa
acccgcccttaaacaatcctccctccctccctccttccctccttccctcc
cccctcaagGTTATCGAAATTTCCCCCCTCTGTCTCCTTGACTTCTACAT
CTCCACCCCGTTCCAACGCCACGGGCTTGGTGCTTCGTTCCTGCGCGCCG
TCCTTCGACACGAAGGGATCGCGAATGCGCCTCACCTCCTTGCGTACGAC
CGGCCATCGGAGCGTCTTCTCCCCTTTCTCGCCAAGCACTTTGGCCTGCA
CAAGTACGTGCCACAGCATAACCACTTTGTGATCTTTGACGAGTACTTCT
CCTCCTCCTCTTCCTCCTCCTCTTCCCCCTCCACCACCGCCACCACCACC
GCCACCACCACCCTTGCCGTATAA
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protein sequence of NO18G02140.1

>NO18G02140.1-protein ID=NO18G02140.1-protein|Name=NO18G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MEGGNGGLMQDQYRPPITQCTAFRLEKSCIAQLPAPARAALDHLAQQSAH
SQSLRGPISCTTRLLASDNHVVYLLTLPSPSSPSSLSTSSGVPRLLISLS
SSSLTSCSSSACSPIGFLKLGRKHLFVSSPSGQVIEISPLCLLDFYISTP
FQRHGLGASFLRAVLRHEGIANAPHLLAYDRPSERLLPFLAKHFGLHKYV
PQHNHFVIFDEYFSSSSSSSSSPSTTATTTATTTLAV*
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Synonyms
Publications