NO18G02020, NO18G02020 (gene) Nannochloropsis oceanica

Overview
NameNO18G02020
Unique NameNO18G02020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2587
Alignment locationchr18:626009..628595 -

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Properties
Property NameValue
DescriptionCleavage stimulation factor subunit 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:626009..628595 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO:0006396RNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR008847Suf
IPR003107HAT
Homology
BLAST of NO18G02020 vs. NCBI_GenBank
Match: EWM23415.1 (cleavage stimulation factor subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 912.5 bits (2357), Expect = 9.000e-262
Identity = 542/801 (67.67%), Postives = 593/801 (74.03%), Query Frame = 0
Query:    1 MAAALALNAPLLGVDSD---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTAFTETQLLSASDRFRDAWARVQANEWDVRAWTAILSEAQTQRSGRAIALRDVYKLATRQFPTMATLWKDWLEHEMRQGNFAEVDNIFRQCLLEVPSVDLYLLYVARVRKTNPASLGDGASPDVVAEQRERVTAAFELAVRQVGVLVDAAPLWWDYIRYVEAWRDEGGRE--------DGGSYGAVAEAGSKIATLRKVYHRAVLVPLDGLDELWRAYEAWEKGLNEHTARQTLPQLLPGYQQAKTVARERRTLLDLPKVSKWAVPPSEAAEEKEQLHLFRRKIDFEKGNPENVDPVALKDRVRLAYRQGFAYFYHFPEVWFEFALYEQESDDVAAAASLFARATRAVPDCLLLHLAWAELEEGRGRAEKGVEVLKGFLTREPSTLGYIAYQHFVRRTLGKEAARKVFTSTKDLRRKGVLGYQWYLAHARLEQHVNQEEEVARKVLDHGLSQHSSFLLEPDYVIATMDLLISLHDEQNVRGLADRALAVLDAAXXXXXXXXXXXXXXXXXXXXXXXXXXKARPIWLKLLEFEMCFASDRDPSRVEKAE-------------------------MGRAP-----GQLRASGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGEISGGGDPRAAAALAAREGRTRREDPHGAKALQQRRLQSIPEYLRRLYQILPIHTGPPIDPDTIIRGLRETPLP 749
            MAAA+ +NAP LGVDSD                                                    LSTAFTE QLLSASDRFRDAW++VQA+EWDVR+W A+LSEAQTQRSGRAIALRDVY+LATRQFPT  +LWKDWLEHE+RQGN A+VD+IFR+CLLEVPSVDLYLLYVARVRKTNPASLGDGASP+ VAEQR RVTAAFEL VRQVGVLVDAAPLWWDYIRYVEAW+DE GR+              AVAEAGSKIATLR++YHRAVLVP+DGLDELWRAYEAWEKGLNEHTARQTLPQLLPG+QQAKTVARERRT+ DL ++S WA PPS  AEEKEQLH  RRKIDFEK NPENVDPVALKDRVRL+YRQ FAYFYHFPEVW+EFA YEQESDDV AAASLFARA RAVPDCLLLHLAWAELE+GRGR +KG E+LKGFL +EPSTLGY+AYQH+VRRT GKEAARKVFT+TKDLRRKGVL Y WYLAHA+LE+HVN E +VAR+VLDHGLS HSSFL EP+YV+ATM++LI L DEQNVR LADRALAVL+A                    XX     KARPIW KLLEFE C ASDRDP+RVE+ +                          G  P       L                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  +RE R RR+DP+GA+ALQQRRLQSIPEYLR+LYQ+LPIHTGPPIDPDTIIRGLR+ PLP
Sbjct:    1 MAAAIEVNAPFLGVDSDSEEEDEEIVPTTAVSRARSSAPPLPKAIITSRGADIPTPTSVKRRQSLGGLALSTAFTEAQLLSASDRFRDAWSKVQAHEWDVRSWAALLSEAQTQRSGRAIALRDVYRLATRQFPTKVSLWKDWLEHELRQGNLAQVDDIFRECLLEVPSVDLYLLYVARVRKTNPASLGDGASPEAVAEQRARVTAAFELGVRQVGVLVDAAPLWWDYIRYVEAWKDENGRDXXXXXXXXXXXXXXAVAEAGSKIATLRRIYHRAVLVPVDGLDELWRAYEAWEKGLNEHTARQTLPQLLPGHQQAKTVARERRTIRDLQRLSSWATPPSHTAEEKEQLHYLRRKIDFEKSNPENVDPVALKDRVRLSYRQAFAYFYHFPEVWYEFAAYEQESDDVVAAASLFARAARAVPDCLLLHLAWAELEDGRGRGDKGAEILKGFLIQEPSTLGYVAYQHYVRRTQGKEAARKVFTATKDLRRKGVLTYHWYLAHAQLEEHVNHEPQVARRVLDHGLSLHSSFLTEPEYVVATMEVLIRLQDEQNVRSLADRALAVLEAG-VSAGPGAGGEREEVATAAXXMAAAEKARPIWFKLLEFETCVASDRDPARVERVQQRIAEAFPRQAESHPLLRLWRRLNMFGTPPVEDSSDDLLRQRWEEPAVSYRLLDDGERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRPAVSREAR-RRDDPYGARALQQRRLQSIPEYLRKLYQMLPIHTGPPIDPDTIIRGLRDNPLP 799          
BLAST of NO18G02020 vs. NCBI_GenBank
Match: XP_005853723.1 (cleavage stimulation factor subunit 3 [Nannochloropsis gaditana CCMP526] >EKU22639.1 cleavage stimulation factor subunit 3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 683.3 bits (1762), Expect = 8.800e-193
Identity = 369/609 (60.59%), Postives = 405/609 (66.50%), Query Frame = 0
Query:    1 MAAALALNAPLLGVDSD---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTAFTETQLLSASDRFRDAWARVQANEWDVRAWTAILSEAQTQRSGRAIALRDVYKLATRQFPTMATLWKDWLEHEMRQGNFAEVDNIFRQCLLEVPSVDLYLLYVARVRKTNPASLGDGASPDVVAEQRERVTAAFELAVRQVGVLVDAAPLWWDYIRYVEAWRDEGGREDGGSYGAVAEAGSKIATLRKVYHRAVLVPLDGLDELWRAYEAWEKGLNEHTARQTLPQLLPGYQQAKTVARERRTLLDLPKVSKWAVPPSEAAEEKEQLHLFRRKIDFEKGNPENVDPVALKDRVRLAYRQGFAYFYHFPEVWFEFALYEQESDDVAAAASLFARATRAVPDCLLLHLAWAELEEGRGRAEKGVEVLKGFLTREPSTLGYIAYQHFVRRTLGKEAARKVFTSTKDLRRKGVLGYQWYLAHARLEQHVNQEEEVARKVLDHGLSQHSSFLLEPDYVIATMDLLISLHDEQNVRGLADRALAVLDAAXXXXXXXXXXXXXXXXXXXXXXXXXXKARPIWLKLLEFEMCFASDRDPSRVEK 595
            MAAA+ +NAP LGVDSD                                                    LSTAFTE QLLSASDRFRDAW++VQA+EWDVR+W A+LSEAQTQRSGRAIALRDVY+LATRQFPT  +LWKDWLEHE+RQGN A+VD+IFR+CLLEVPSVDLYLLYVARVRKTNPASLGDGASP+ VAEQR RVTAAFEL VRQVGVLVDAAPLWWDYIRYVEAW+DE GR+                                                                                             EEKEQLH  RRKIDFEK NPENVDPVALKDRVRL+YRQ FAYFYHFPEVW+EFA YEQESDDV AAASLFARA RAVPDCLLLHLAWAELE+GRGR +KG E+LKGFL +EPSTLGY+AYQH+VRRT GKEAARKVFT+TKDLRRKGVL Y WYLAHA+LE+HVN E +VAR+VLDHGLS HSSFL EP+YV+ATM++LI L DEQNVR LADRALAVL+A                    XX     KARPIW KLLEFE C ASDRDP+RVE+
Sbjct:    1 MAAAIEVNAPFLGVDSDSEEEDEEIVPTTAVSRARSSAPPLPKAIITSRGADIPTPTSVKRRQSLGGLALSTAFTEAQLLSASDRFRDAWSKVQAHEWDVRSWAALLSEAQTQRSGRAIALRDVYRLATRQFPTKVSLWKDWLEHELRQGNLAQVDDIFRECLLEVPSVDLYLLYVARVRKTNPASLGDGASPEAVAEQRARVTAAFELGVRQVGVLVDAAPLWWDYIRYVEAWKDENGRD---------------------------------------------------------------------------------------------EEKEQLHYLRRKIDFEKSNPENVDPVALKDRVRLSYRQAFAYFYHFPEVWYEFAAYEQESDDVVAAASLFARAARAVPDCLLLHLAWAELEDGRGRGDKGAEILKGFLIQEPSTLGYVAYQHYVRRTQGKEAARKVFTATKDLRRKGVLTYHWYLAHAQLEEHVNHEPQVARRVLDHGLSLHSSFLTEPEYVVATMEVLIRLQDEQNVRSLADRALAVLEAG-VSAGPGAGGEREEVATAAXXMAAAEKARPIWFKLLEFETCVASDRDPARVER 515          
BLAST of NO18G02020 vs. NCBI_GenBank
Match: CBN77606.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 320.1 bits (819), Expect = 2.000e-83
Identity = 189/539 (35.06%), Postives = 287/539 (53.25%), Query Frame = 0
Query:   67 ASDRFRDAWARVQANEWDVRAWTAILSEAQTQRSGRAIALRDVYKLATRQFPTMATLWKDWLEHEMRQGNFAEVDNIFRQCLLEVPSVDLYLLYVARVRKTNPASLGDGASPDVVAEQRERVTAAFELAVRQVGVLVDAAPLWWDYIRYVEAWRDEGGREDGGSYGAVAEAGSKIATLRKVYHRAVLVPLDGLDELWRAYEAWEKGLNEHTARQTLP-QLLPGYQQAKTVARERRTLLDLPKVSKWAVP-------------------PSEAAEEKEQLHLFRRKIDFEKGNPENVDPVALKDRVRLAYRQGFAYFYHFPEVWFEFALYEQESDDVAAAASLFARATRAVPDCLLLHLAWAELEEGRGRAEKGVEVLKGFLTREPSTLGYIAYQHFVRRTLGKEAARKVFTSTKDLRRKGVLGYQWYLAHARLEQHVNQEEEVARKVLDHGLSQHSSFLLEPDYVIATMDLLISLHDEQNVRGLADRALAVLDAAXXXXXXXXXXXXXXXXXXXXXXXXXXKARPIWLKLLEFEMCFAS 586
            ASDRF+    R++ + WD  AWT ++ EAQ  R G  ++L+DV +   +QFPT     +   + EM  G++   D + ++ L    S++L+LLY+ RVR++  A  G G +     E RE   AAFELA+  VG    + PLW  Y+ Y+++W +           +  + G+K+  +RKVY R V +PLDGL+ LWR  E +E   NE   +     + LP +  AK V +ER+ + D    +  A P                         +  Q  L++R++ FE+ NPE  D   L+ RVR +Y Q  ++  HF E+W++ A YE    +   AA+++ +A   +P   LL +A A+LEE RGR E+     K FL    ST G++ Y  FVRR +GKEAAR+ F +T+ LRR G++GY+ YLAHA +E HVN E EVAR+VL+HGLSQH  ++ EP+YV+  +D L+  +DE+N+R L +R L                                +AR +W + ++ E+C +S
Sbjct:   54 ASDRFKTYVRRIELDPWDTDAWTGLVKEAQNNRGG-GMSLKDVLRKFLKQFPTSGRYRRMLAQAEMESGDWQAADKVLQEGLETCASLELWLLYLERVRRS--AVAGGGRTEQ---EAREDTIAAFELALLHVGCNPASTPLWQKYLDYIKSWEER----------SPLDKGNKMTAIRKVYRRVVALPLDGLEPLWRECEEFEMAGNEVLWKTKFSLEYLPKHMAAKAVYKERKPIWDGIDPNLLARPXXXXXXXXXXXXXXXXXXXXXXXXXQAGQYRLWKRRLAFERTNPELTDEDGLRARVRHSYAQCLSHLRHFCEIWYDLAEYEYSLGEADRAAAVYRKAVEVIPGSDLLRVAQADLEERRGRIEEADAAWKAFLKDRRSTTGHVMYLRFVRRNMGKEAARRAFGATRALRRAGLVGYRLYLAHASIELHVNGEPEVARRVLEHGLSQHEGYVAEPEYVLEYIDFLVQRNDEENLRVLFERVL------------------------HPSAMPAERARLVWERFVQLELCLSS 552          
BLAST of NO18G02020 vs. NCBI_GenBank
Match: XP_004337190.1 (tetratricopeptide repeat domain containing protein [Acanthamoeba castellanii str. Neff] >ELR15177.1 tetratricopeptide repeat domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 287.3 bits (734), Expect = 1.400e-73
Identity = 178/525 (33.90%), Postives = 274/525 (52.19%), Query Frame = 0
Query:   78 VQANEWDVRAWTAILSEAQTQRSGRAIALRDVYKLATRQFPTMATLWKDWLEHEMRQGNFAEVDNIFRQCLLEVPSVDLYLLYVARVRKTNPASLGDGASPDVVAEQRERVTAAFELAVRQVGVLVDAAPLWWDYIRYVEAWRDEGGREDGGSYGAVAEAGSKIATLRKVYHRAVLVPLDGLDELWRAYEAWEKGLNEHTARQTLPQLLPGYQQAKTVARERRTLLDLPKVSKWAVPPSEAAEEKEQLHLFRRKIDFEKGNPENVDPVALKDRVRLAYRQGFAYFYHFPEVWFEFALYEQESDDVAAAASLFARATRAVPDCLLLHLAWAELEEGRGRAEKGVEVLKGFLTREP--STLGYIAYQHFVRRTLGKEAARKVFTSTKDLRRKGVLGYQWYLAHARLEQHVNQEEEVARKVLDHGLSQHSSFLLEPDYVIATMDLLISLHDEQNVRGLADRALAVLDAAXXXXXXXXXXXXXXXXXXXXXXXXXXKARPIWLKLLEFEMCFASDRDPSRVEKAEMGRA 601
            +  N ++  AW A+++EA    S  +  LR+ Y+   + FPT    WK + EHEM  GN+A V+NIFR+CLL  P++DL+  Y+  +R      + DG  PD    +RE V  AFE A+  +G+ ++A  +W DYI+Y +A     G +    +    E   K+AT+R++Y RA+  P+  L+ LW+ Y+A+E G+N+  A+  + +    Y  A+ V  ERR  +D  +++   VPP+   +E  Q+ L+RR I+FEK NPE      L+ RV  AY Q     YHF E+W E A Y+ ++       +++ RA  A+P  L LHLA+A+L E   R  +  E+ +  +   P  +TL +I Y  F+RRT G +AARK+F   K  +  G   Y  Y+A A LE H N+  + AR V + GL +   F+ EP YV+  +  LI L+++ NVR + +R L   + A                          +   +W  LLEFE       D + ++K E  RA
Sbjct:   63 IATNLYNTDAWLALINEANRHSSDMSF-LREAYERFLKIFPTAGRYWKQYAEHEMTAGNYANVENIFRRCLLTCPNMDLWRCYLTYIR-----LIKDG-KPD----ERESVLRAFEFAIEHMGMDLNATHIWRDYIQYAKA-----GPKPANQF----EESQKVATVRRLYQRAIESPISNLESLWKEYDAFESGVNKLLAKPLIAEYAGKYMTARAVCHERRGYVDGLQLNMLPVPPTHTPQEAHQVRLWRRLINFEKTNPERTPDERLRRRVGFAYNQALQCLYHFAEIWHEAAQYQIDNGAPEEGQTIYERAVNALPTNLFLHLAYADLLESGKRVSEAKEIYERIIQHTPGTNTLAHIHYLRFLRRTEGPDAARKLFVKAK--KAPGTT-YHLYVATAMLEYHANRNVDYARDVFNAGLKK---FIGEPTYVLHYLRFLIQLNEDNNVRAVFERVLGSAEMA------------------------NERTAELWNALLEFEYAAG---DLASIQKLEKRRA 534          
BLAST of NO18G02020 vs. NCBI_GenBank
Match: PTQ50614.1 (hypothetical protein MARPO_0001s0525 [Marchantia polymorpha])

HSP 1 Score: 279.6 bits (714), Expect = 2.900e-71
Identity = 160/464 (34.48%), Postives = 258/464 (55.60%), Query Frame = 0
Query:   77 RVQANEWDVRAWTAILSEAQTQRSGRAIALRDVYKLATRQFPTMATLWKDWLEHEMRQGNFAEVDNIFRQCLLEVPSVDLYLLYVARVRKTNPASLGDGASPDVVAEQRERVTAAFELAVRQVGVLVDAAPLWWDYIRYVEAWRDEGGREDGGSYGAVAEAGSKIATLRKVYHRAVLVPLDGLDELWRAYEAWEKGLNEHTARQTLPQLLPGYQQAKTVARERRTLLDLPKVSKWAVPPSEAAEEKEQLHLFRRKIDFEKGNPENVDPVALKDRVRLAYRQGFAYFYHFPEVWFEFALYEQESDDVAAAASLFARATRAVPDCLLLHLAWAELEEGRGRAEKGVEVLKGFLTRE--PSTLGYIAYQHFVRRTLGKEAARKVFTSTKDLRRKGVLGYQWYLAHARLEQHVNQEEEVARKVLDHGLSQHSSFLLEPDYVIATMDLLISLHDEQNVRGLADRALAVL 539
            R+    +DV AWT+I +EAQ++    A  L   Y+     FPT A  WK ++E +M   N   V  IF +CLL   +VDL+  Y+  +RK N     +G         RE +  A++  +  +GV + A P+W ++I +++A                 E   ++ ++RK Y RAVL P+  +++LW+ YE++E  ++   A+  L +  P +  A+ V RER+   +    S  A PP+ + +E++Q  +++  ++FEKGNP+ +DP AL  RV   Y Q   Y YH+P++W+++A +  E++   AA ++F RA +A+PD  +LH A+AE EE RG  E+  +V +  L  +   + L YI Y  FVRRT G EAARK+F    + R+     Y  Y+A A +E  V+++ +VAR + + GL ++S    EP YV+   D L  ++D++NVR L +RAL VL
Sbjct:   28 RISVQRYDVEAWTSIANEAQSRPINEAAPL---YEQLLATFPTAARFWKMYVEAQMAANNDDAVKQIFSRCLLNCLNVDLWRCYIRFMRKVNDNRGNEG---------REEMKKAYDFMLNHLGVDIAAGPVWMEFISFLKA----------APALTPQEESQRMTSIRKAYQRAVLTPIHLVEQLWKDYESFENSVSRALAKGLLAEYQPKHFSARAVYRERKKHCERIDHSILAAPPTGSIKEEQQCVVWKALLNFEKGNPQRLDPGALSKRVAFTYEQCLMYLYHYPDIWYDYATWHAENNAFDAAVAIFGRALKALPDTSVLHYAYAEFEESRGSIEEAKKVYETLLRNDTTANALAYIQYMRFVRRTEGVEAARKIFL---EARKSPGCTYHVYVASATMELCVDKDPKVARNIFELGLKKYSH---EPAYVLEYADFLCRMNDDRNVRVLFERALKVL 463          
BLAST of NO18G02020 vs. NCBI_GenBank
Match: XP_024371754.1 (cleavage stimulation factor subunit 77-like isoform X2 [Physcomitrella patens] >PNR57655.1 hypothetical protein PHYPA_004649 [Physcomitrella patens])

HSP 1 Score: 275.8 bits (704), Expect = 4.300e-70
Identity = 159/475 (33.47%), Postives = 258/475 (54.32%), Query Frame = 0
Query:   68 SDRFRDAWARVQANEWDVRAWTAILSEAQTQRSGRAIALRDVYKLATRQFPTMATLWKDWLEHEMRQGNFAEVDNIFRQCLLEVPSVDLYLLYVARVRKTNPASLGDGASPDVVAEQRERVTAAFELAVRQVGVLVDAAPLWWDYIRYVEAWRDEGGREDGGSYGAVAEAGSKIATLRKVYHRAVLVPLDGLDELWRAYEAWEKGLNEHTARQTLPQLLPGYQQAKTVARERRTLLDLPKVSKWAVPPSEAAEEKEQLHLFRRKIDFEKGNPENVDPVALKDRVRLAYRQGFAYFYHFPEVWFEFALYEQESDDVAAAASLFARATRAVPDCLLLHLAWAELEEGRGRAEKGVEVLKGFLT--REPSTLGYIAYQHFVRRTLGKEAARKVFTSTKDLRRKGVLGYQWYLAHARLEQHVNQEEEVARKVLDHGLSQHSSFLLEPDYVIATMDLLISLHDEQNVRGLADRALAVLDA 541
            S+  R A A +  N  DV AW  + +EAQ +  G A+    +Y+     FPT A  WK ++E ++   +   V  IF +CLL+   VDL+  Y+  +RK N     +G         RE +  AFE  +  +G  ++A P+W +YI Y++A                 E   ++  +RK Y +AVL P+  ++++W+ YE++E  ++   A+  L +  P +  A+ V RER+   D  + +  AVPP+ + +E++Q   +++ + FEKGNP+ +DPV L   V   Y Q   Y YH+P++W+++A +  ++    +AA +F RA +A+PD  +LH A+AE EE RG  ++   V +   T  +    L YI    FVRRT G EAARK+F    + R+     Y  Y+A A +E  V+++ +VAR + + GL +   ++ EP YV+   D L  ++DE+NVR L +RAL+VL A
Sbjct:   94 SNNERRARAAILINPHDVDAWNGLCNEAQMKPIGDAV---PIYEELVSTFPTSAKFWKVYVEAQLTANDDDAVKQIFSRCLLQCLHVDLWRAYLRYMRKVNENRGSEG---------REEMKKAFEFMLGHIGFDINAGPVWLEYISYLKA----------APAATPQEESFRMTAVRKAYQKAVLAPVHLVEQIWKEYESFENSVSRALAKGLLAEYQPKHFSARAVYRERKKYCDHIETNMLAVPPTGSYKEEQQCIAWKQLLKFEKGNPQRLDPVGLTKHVAFTYEQCLMYLYHYPDIWYDYATWHAQNGSPDSAAVIFQRALKALPDTAVLHYAYAEFEEARGAVKEAKAVYETLTTNSKTADALAYIQLMRFVRRTEGIEAARKIFL---EARKSSACTYHVYVASATMELCVDKDPKVARNIFELGLKK---YIHEPAYVLEYADFLCRMNDERNVRVLFERALSVLPA 540          
BLAST of NO18G02020 vs. NCBI_GenBank
Match: XP_024371753.1 (cleavage stimulation factor subunit 77-like isoform X1 [Physcomitrella patens])

HSP 1 Score: 275.8 bits (704), Expect = 4.300e-70
Identity = 159/475 (33.47%), Postives = 258/475 (54.32%), Query Frame = 0
Query:   68 SDRFRDAWARVQANEWDVRAWTAILSEAQTQRSGRAIALRDVYKLATRQFPTMATLWKDWLEHEMRQGNFAEVDNIFRQCLLEVPSVDLYLLYVARVRKTNPASLGDGASPDVVAEQRERVTAAFELAVRQVGVLVDAAPLWWDYIRYVEAWRDEGGREDGGSYGAVAEAGSKIATLRKVYHRAVLVPLDGLDELWRAYEAWEKGLNEHTARQTLPQLLPGYQQAKTVARERRTLLDLPKVSKWAVPPSEAAEEKEQLHLFRRKIDFEKGNPENVDPVALKDRVRLAYRQGFAYFYHFPEVWFEFALYEQESDDVAAAASLFARATRAVPDCLLLHLAWAELEEGRGRAEKGVEVLKGFLT--REPSTLGYIAYQHFVRRTLGKEAARKVFTSTKDLRRKGVLGYQWYLAHARLEQHVNQEEEVARKVLDHGLSQHSSFLLEPDYVIATMDLLISLHDEQNVRGLADRALAVLDA 541
            S+  R A A +  N  DV AW  + +EAQ +  G A+    +Y+     FPT A  WK ++E ++   +   V  IF +CLL+   VDL+  Y+  +RK N     +G         RE +  AFE  +  +G  ++A P+W +YI Y++A                 E   ++  +RK Y +AVL P+  ++++W+ YE++E  ++   A+  L +  P +  A+ V RER+   D  + +  AVPP+ + +E++Q   +++ + FEKGNP+ +DPV L   V   Y Q   Y YH+P++W+++A +  ++    +AA +F RA +A+PD  +LH A+AE EE RG  ++   V +   T  +    L YI    FVRRT G EAARK+F    + R+     Y  Y+A A +E  V+++ +VAR + + GL +   ++ EP YV+   D L  ++DE+NVR L +RAL+VL A
Sbjct:   94 SNNERRARAAILINPHDVDAWNGLCNEAQMKPIGDAV---PIYEELVSTFPTSAKFWKVYVEAQLTANDDDAVKQIFSRCLLQCLHVDLWRAYLRYMRKVNENRGSEG---------REEMKKAFEFMLGHIGFDINAGPVWLEYISYLKA----------APAATPQEESFRMTAVRKAYQKAVLAPVHLVEQIWKEYESFENSVSRALAKGLLAEYQPKHFSARAVYRERKKYCDHIETNMLAVPPTGSYKEEQQCIAWKQLLKFEKGNPQRLDPVGLTKHVAFTYEQCLMYLYHYPDIWYDYATWHAQNGSPDSAAVIFQRALKALPDTAVLHYAYAEFEEARGAVKEAKAVYETLTTNSKTADALAYIQLMRFVRRTEGIEAARKIFL---EARKSSACTYHVYVASATMELCVDKDPKVARNIFELGLKK---YIHEPAYVLEYADFLCRMNDERNVRVLFERALSVLPA 540          
BLAST of NO18G02020 vs. NCBI_GenBank
Match: OAE18282.1 (hypothetical protein AXG93_436s1120 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 265.8 bits (678), Expect = 4.400e-67
Identity = 157/464 (33.84%), Postives = 253/464 (54.53%), Query Frame = 0
Query:   77 RVQANEWDVRAWTAILSEAQTQRSGRAIALRDVYKLATRQFPTMATLWKDWLEHEMRQGNFAEVDNIFRQCLLEVPSVDLYLLYVARVRKTNPASLGDGASPDVVAEQRERVTAAFELAVRQVGVLVDAAPLWWDYIRYVEAWRDEGGREDGGSYGAVAEAGSKIATLRKVYHRAVLVPLDGLDELWRAYEAWEKGLNEHTARQTLPQLLPGYQQAKTVARERRTLLDLPKVSKWAVPPSEAAEEKEQLHLFRRKIDFEKGNPENVDPVALKDRVRLAYRQGFAYFYHFPEVWFEFALYEQESDDVAAAASLFARATRAVPDCLLLHLAWAELEEGRGRAEKGVEVLKGFLTRE--PSTLGYIAYQHFVRRTLGKEAARKVFTSTKDLRRKGVLGYQWYLAHARLEQHVNQEEEVARKVLDHGLSQHSSFLLEPDYVIATMDLLISLHDEQNVRGLADRALAVL 539
            R+    +DV AWT+I +EAQ++    A  L   Y+     FPT A  WK ++E +M   N   V  IF +CLL   +VDL+               G+        E RE +  A++  +  +GV + A P+W ++I +++A                 E   ++ ++RK Y RAVL P+  +++LW+ YE++E  ++   A+  L +  P +  A+ V RER+   +    S  A PP+ + +E++Q  +++  ++FEKGNP+ +DP AL  RV   Y Q   Y YH+P++W+++A +  E++   AA ++F RA +A+PD  +LH A+AE EE RG  E+  +V +  L  +   + L YI Y  FVRRT G EAARK+F    + R+     Y  Y+A A +E  V+++ +VAR + + GL ++S    EP YV+   D L  ++D++NVR L +RAL VL
Sbjct:   24 RISVQRYDVEAWTSIANEAQSRPINEAAPL---YEQLLATFPTAARFWKMYVEAQMAANNDDAVKQIFSRCLLNCLNVDLW---------------GN--------EGREEMKKAYDFMLNHLGVDIAAGPVWMEFISFLKA----------APALTPQEESQRMTSIRKAYQRAVLTPIHLVEQLWKDYESFENSVSRALAKGLLAEYQPKHFSARAVYRERKKHCERIDHSILAAPPTGSIKEEQQCVVWKALLNFEKGNPQRLDPGALSKRVAFTYEQCLMYLYHYPDIWYDYATWHAENNAFDAAVAIFGRALKALPDTSVLHYAYAEFEESRGSIEEAKKVYETLLRNDTTANALAYIQYMRFVRRTEGVEAARKIFL---EARKSPGCTYHVYVASATMELCVDKDPKVARNIFELGLKKYSH---EPAYVLEYADFLCRMNDDRNVRVLFERALKVL 445          
BLAST of NO18G02020 vs. NCBI_GenBank
Match: XP_009521739.1 (hypothetical protein PHYSODRAFT_327351 [Phytophthora sojae] >EGZ26451.1 hypothetical protein PHYSODRAFT_327351 [Phytophthora sojae])

HSP 1 Score: 257.3 bits (656), Expect = 1.600e-64
Identity = 164/542 (30.26%), Postives = 265/542 (48.89%), Query Frame = 0
Query:   70 RFRDAWARVQANEWDVRAWTAILSEAQTQRSGRAIALRDVYKLATRQFPTMATLWKDWLEHEMRQGNFAEVDNIFRQCLLEV--PSVDLYLLYVARVRKTNPASLGDGASPDVVAEQRERVTAAFELAVRQVGVLVDAAPLWWDYIRYVEAWRDEGGREDGGSYGAVAEAGSKIATLRKVYHRAVLVPLDGLDELWRAYEAWEKGL--NEHTARQTLPQLLPGYQQAKTVARERRTLLDLPKVSKWAVPPSEAAEEKEQLHLFRRKIDFEKGNPENVDPVALKDRVRLAYRQGFAYFYHFPEVWFEFALYEQESDDVAAAASLFARATRAVPDCLLLHLAWAELEEGRGRAEKGVEVLKGFLTREPSTLGYIAYQHFVRRTLGKEA---ARKVFTSTKDLRRKGVLGYQWYLAHARLEQHVNQEE---EVARKVLDHGLSQHSSFLLEPDYVIATMDLLISLHDEQNVRGLADRALAVLDAAXXXXXXXXXXXXXXXXXXXXXXXXXXKARPIWLKLLEFE-MCFASDRDPSRVEKAEMGRA 601
            +F+   A V+ + W+  AW A+++E Q      A   R+ Y+   + FPT    WK + EHE+R+  +  V  I ++ L+++  P+VDL+  Y+   +        D      +A  R+ +  AFELA+ +VG  + AAP+W  Y+ +V+  +D                      +RK+YHR V+VPL+G+D +WR YE +E+ +  NE  A+       P +  A+ V R+R+ L D    +  AVP + +  +   +  +++ +  E GNPE +D + LK R+R       +   H+PE W+++A YE + +D  AAAS+F RA  A+PD   LH A+A+  E RG       + +  L    S L Y+ YQ F RR  G +    AR +F   +   R+G   Y  + A A LE + +  E   ++A K+ + GL +    + EP YV+  +D L  L+D+ N+R L ++ L+V+ A                            +RPIW + +EFE    AS  D + V K E  RA
Sbjct:   50 KFKRCVAAVEKDAWNADAWIALMNEVQLLPVAEA---REHYEAFLKLFPTSGRWWKLYAEHELREKQYDRVQEIIKKSLMQLRCPNVDLWRFYLDFTKVVKLDVAVDSKEAAAIATARQLMVDAFELAIERVGGSIHAAPIWQMYLTFVQEEQDP----------------QAFLNVRKLYHRMVMVPLNGMDTIWRDYEKFERAIPNNEALAQNFFKVFRPKFDAARAVLRDRKKLYDQVNANALAVPATSSRADAADMANWQKILALEMGNPERLDALRLKSRMRYTLELFVSVKRHYPEAWYQYASYENQVNDPEAAASVFERAIEAIPDSSYLHFAFADHHELRGDIPAAKAIYEKLLKDHASALAYVTYQRFARRAYGAKGLSEARAIFKRARKDEREGACTYHVFAASALLEFYSDNSESGKDIALKIFELGLKK---CIQEPAYVLCYLDFLGHLNDDNNMRSLFEKVLSVMPAEV--------------------------SRPIWDRYVEFEHTMVASGGDLAAVAKVEARRA 543          
BLAST of NO18G02020 vs. NCBI_GenBank
Match: ETI36449.1 (hypothetical protein F443_17466 [Phytophthora parasitica P1569])

HSP 1 Score: 257.3 bits (656), Expect = 1.600e-64
Identity = 163/542 (30.07%), Postives = 267/542 (49.26%), Query Frame = 0
Query:   70 RFRDAWARVQANEWDVRAWTAILSEAQTQRSGRAIALRDVYKLATRQFPTMATLWKDWLEHEMRQGNFAEVDNIFRQCLLEV--PSVDLYLLYVARVRKTNPASLGDGASPDVVAEQRERVTAAFELAVRQVGVLVDAAPLWWDYIRYVEAWRDEGGREDGGSYGAVAEAGSKIATLRKVYHRAVLVPLDGLDELWRAYEAWEKGL--NEHTARQTLPQLLPGYQQAKTVARERRTLLDLPKVSKWAVPPSEAAEEKEQLHLFRRKIDFEKGNPENVDPVALKDRVRLAYRQGFAYFYHFPEVWFEFALYEQESDDVAAAASLFARATRAVPDCLLLHLAWAELEEGRGRAEKGVEVLKGFLTREPSTLGYIAYQHFVRRTLGKEA---ARKVFTSTKDLRRKGVLGYQWYLAHARLEQHVNQEE---EVARKVLDHGLSQHSSFLLEPDYVIATMDLLISLHDEQNVRGLADRALAVLDAAXXXXXXXXXXXXXXXXXXXXXXXXXXKARPIWLKLLEFE-MCFASDRDPSRVEKAEMGRA 601
            +F+   A V+ ++W+  AW A+++E Q      A   R+ Y+   +QFPT    WK + EHE+R+  +  V  I ++ L+++  P+VDL+  Y+   +        D      +A  R+ +  AFELAV +VG  + AAP+W  Y+ +V+  +D                      +RK+YHR V+VPL+G++ +WR YE +E+ +  NE  A+       P +  A+ V R+R+ L D    +  AVP + +  +   +  +++ +  E GNPE +D + LK R+R       +   H+PE W+++A YE +++D  AA S+F RA  A+PD   LH A+A+  E RG       + +  L    S L Y+ YQ F RR  G +    AR +F   +   R+G   Y  + A A LE + +  E   ++A K+ + GL +    + EP YV+  +D L  L+D+ N+R L ++ L+V+ +                            +RPIW + +EFE    AS  D + V K E  RA
Sbjct:   50 KFKRCVAAVEKDQWNADAWIALMNEVQLLPITEA---REHYEAFLKQFPTSGRWWKLYAEHELREKQYDRVQEIIKKSLMQLRCPNVDLWRFYLDFTKVVKLDVAVDSKDAAAIATARQLMVDAFELAVERVGGSIHAAPIWQMYLTFVQEEQDP----------------QAFLNVRKLYHRMVMVPLNGMETIWRDYEKFERAIPNNEALAQNFFKVFRPKFDAARAVLRDRKKLYDQVNTNALAVPATSSRADTADMANWQKILALEMGNPERLDALRLKSRMRYTLELFVSVKRHYPEAWYQYAAYENQANDPDAATSVFERAIEAIPDSSYLHFAFADHHELRGDIPAAKAIYEKLLKDHVSALAYVTYQRFARRAYGAKGLAEARAIFKRARKDEREGACTYHVFAASALLEFYSDNSEAGKDIALKIFELGLKK---CIQEPAYVLCYLDFLGHLNDDNNMRSLFEKVLSVMPSEV--------------------------SRPIWDRYVEFEHTMVASGGDLATVAKVEARRA 543          
The following BLAST results are available for this feature:
BLAST of NO18G02020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23415.19.000e-26267.67cleavage stimulation factor subunit 3 [Nannochloro... [more]
XP_005853723.18.800e-19360.59cleavage stimulation factor subunit 3 [Nannochloro... [more]
CBN77606.12.000e-8335.06conserved unknown protein [Ectocarpus siliculosus][more]
XP_004337190.11.400e-7333.90tetratricopeptide repeat domain containing protein... [more]
PTQ50614.12.900e-7134.48hypothetical protein MARPO_0001s0525 [Marchantia p... [more]
XP_024371754.14.300e-7033.47cleavage stimulation factor subunit 77-like isofor... [more]
XP_024371753.14.300e-7033.47cleavage stimulation factor subunit 77-like isofor... [more]
OAE18282.14.400e-6733.84hypothetical protein AXG93_436s1120 [Marchantia po... [more]
XP_009521739.11.600e-6430.26hypothetical protein PHYSODRAFT_327351 [Phytophtho... [more]
ETI36449.11.600e-6430.07hypothetical protein F443_17466 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004058NSK004058Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02020.1NO18G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633210gene_8896Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100077g14gene7049Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02020.1NO18G02020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02020 ID=NO18G02020|Name=NO18G02020|organism=Nannochloropsis oceanica|type=gene|length=2587bp
ATGGCTGCTGCCCTCGCCCTCAACGCGCCCCTGCTGGGTGTCGACTCCGA
TTCGGAAGAAGAGGATGAGGAGATTGTGCCCATgtccgcagagattgccc
tgtcgcgtggcagcacgcttcttccacccggcagcatcaccccctaggca
gCAGCAGCAACGCGGTGGCAGCCAGCAGCAGCACTGCCAGCGCGGCTGTA
AAGCGCCGGCAAAGCCTAGGTGGAGCCGCATTATCTACAGCATTTACTGA
GACACAGCTGTTGTCGGCCTCGGATCGCTTTCGAGATGCCTGGGCCAGAG
TCCAAGCTAACGAGTGGGACGTGCGGGCGTGGACTGCCATCCTCAGCGAA
GCGCAGACACAACGCTCCGGCCGTGCCATCGCCTTGCGTGATGTTTACAA
GCTTGCGACGCGTCAATTTCCTACCATGGCGACGCTGTGGAAGGACTGGT
TGGAGCATGAAATGAGACAAGGGAATTTCGCAGAAGTAGACAATATTTTT
CGTCAATGCCTCCTGGAAGTCCCCTCGGTCGACCTCTACCTCCTCTATGT
GGCGCGTGTCCGCAAAACTAATCCTGCATCTCTAGGGGATGGAGCGTCGC
CTGATGTGGTGGCGGAGCAGCGGGAGCGAGTGACGGCTGCATTTGAGTTG
GCCGTGAGACAAGTGGGAGTGCTGGTGGACGCAGCGCCGTTGTGGTGGGA
TTACATTCGGTATGTTGAGGCTTGGAGGGACGAGGGGGGAAGGGAAGATG
GGGGCAGTTATGGTGCGGTGGCGGAGGCGGGGTCGAAGATAGCGACGTTA
AGGAAAGTATACCACCGAGCTGTGCTGGTGCCGTTGGATGGGCTGGACGA
GTTGTGGCGTGCCTATGAAGCGTGGGAGAAGGGATTGAACGAGCACACAG
CGAGGCAGACATTACCGCAATTGCTGCCTGGGTATCAGCAGGCGAAGACC
GTGGCGAGGGAGAGGAGGACGTTGCTTGACTTGCCCAAAGTGAGTAAATG
GGCCGTTCCCCCTTCAGAGGCCGCGGAGGAGAAGGAGCAATTGCATCTTT
TCCGGCGAAAGATCGATTTTGAGAAGGGAAACCCCGAGAATGTGGATCCG
GTAGCACTGAAAGATAGGGTGCGATTGGCGTATAGGCAGGGTTTTGCTTA
TTTTTATCATTTCCCGGAGGTATGGTTTGAGTTTGCCTTGTACGAGCAAG
AGAGCGATGATGTCGCTGCTGCTGCTTCTCTCTTCGCCCGTGCCACGCGG
GCGGTGCCGGACTGTTTACTGCTGCACTTAGCATGGGCAGAATTAGAGGA
GGGGAGGGGGAGGGCTGAAAAGGGCGTGGAGGTGTTGAAGGGCTTCTTGA
CCCGAGAACCAAGCACACTGGGGTACATTGCATACCAACATTTCGTGAGG
AGGACGCTGGGGAAGGAAGCTGCAAGGAAGGTGTTCACAAGCACGAAGGA
CTTGAGAAGGAAAGGTGTCTTGGGGTATCAGTGGTATTTGGCACACGCGC
GGTTGGAGCAGCACGTGAATCAAGAGGAAGAGGTGGCGCGGAAGGTCCTC
GATCATGGTCTCTCCCAGCATTCCTCGTTTTTATTGGAGCCTGACTACGT
CATAGCCACGATGGATCTACTCATCTCCCTCCACGATGAACAAAACGTCC
GTGGCCTGGCAGACCGGGCTCTCGCCGTGCTCGACGCCGCGCCCGCAGCG
GCTGTTGCTGCACCTGGAGGAGAGCGGGAAGAGGTGGCATCGGCCGCAGC
AGCGATGGCAGCAGCAGAGAAGGCAAGACCGATTTGGTTGAAGCTGCTGG
AGTTTGAGATGTGCTTTGCCAGTGATCGCGACCCTTCGAGGGTGGAAAAG
gtccagaagagaatagcagaagcgtacccacgacaagcggagccacatcc
tttcctgcggctgtggaggagggtgaacatgttgaaggcagcacctgcat
cagaggggtcggatgacctattaagGCAGAGATGGGACGAGCCCCGGGTC
AGTTACGGGCTAGCGGAGGAGGGAGGGAGGGAGGGAGGGATAAGTGGGGG
GAGAGGTGGTGGAAGGGGGCAGGGAAGAGGAATGGAGGGAAGACAGGAGG
GGCGTCGGCGGCGGCACTGGCGGCAGCATCAGCAGCGGCAGTGGCGGCGG
AGGGAGTAGGGACGTTGTCGGCAGAGGGAGGGAGGGAGGGAGGGAGGGAG
GAGGGAGACGGAGGAGAAATAAGTGGCGGTGGGGATCCGAGAGCAGCAGC
AGCGTTAGCGGCAAGAGAGGGACGGACGAGGAGAGAGGACCCTCATGGAG
CAAAGGCGCTACAGCAACGGCGATTGCAGAGTATTCCTGAGTATTTGCGT
CGGCTTTATCAGATCTTGCCCATCCATACAGGTCCTCCCATAGACCCCGA
TACCATCATAAGGGGTTTGAGAGAGACACCGTTGCCACCTCGTCCACCGG
GACCAGCGCATGGTTCCTCTTCAGGGGCTCTAGGAGAGAGGGAGAGGGGA
GGGAGGGGAGGAAGAGCGGGGGGGAGGAAGAGGGGGAGGTACGGGGGTGG
GGGGATTCGGATAGTGGGGGAAGTGATGATGACATGA
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protein sequence of NO18G02020.1

>NO18G02020.1-protein ID=NO18G02020.1-protein|Name=NO18G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=798bp
MAAALALNAPLLGVDSDSEEEDEEIVPISSNAVAASSSTASAAVKRRQSL
GGAALSTAFTETQLLSASDRFRDAWARVQANEWDVRAWTAILSEAQTQRS
GRAIALRDVYKLATRQFPTMATLWKDWLEHEMRQGNFAEVDNIFRQCLLE
VPSVDLYLLYVARVRKTNPASLGDGASPDVVAEQRERVTAAFELAVRQVG
VLVDAAPLWWDYIRYVEAWRDEGGREDGGSYGAVAEAGSKIATLRKVYHR
AVLVPLDGLDELWRAYEAWEKGLNEHTARQTLPQLLPGYQQAKTVARERR
TLLDLPKVSKWAVPPSEAAEEKEQLHLFRRKIDFEKGNPENVDPVALKDR
VRLAYRQGFAYFYHFPEVWFEFALYEQESDDVAAAASLFARATRAVPDCL
LLHLAWAELEEGRGRAEKGVEVLKGFLTREPSTLGYIAYQHFVRRTLGKE
AARKVFTSTKDLRRKGVLGYQWYLAHARLEQHVNQEEEVARKVLDHGLSQ
HSSFLLEPDYVIATMDLLISLHDEQNVRGLADRALAVLDAAPAAAVAAPG
GEREEVASAAAAMAAAEKARPIWLKLLEFEMCFASDRDPSRVEKAEMGRA
PGQLRASGGGREGGRDKWGERWWKGAGKRNGGKTGGASAAALAAASAAAV
AAEGVGTLSAEGGREGGREEGDGGEISGGGDPRAAAALAAREGRTRREDP
HGAKALQQRRLQSIPEYLRRLYQILPIHTGPPIDPDTIIRGLRETPLPPR
PPGPAHGSSSGALGERERGGRGGRAGGRKRGRYGGGGIRIVGEVMMT*
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Synonyms
Publications