NO18G02000, NO18G02000 (gene) Nannochloropsis oceanica

Overview
NameNO18G02000
Unique NameNO18G02000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3210
Alignment locationchr18:618642..621851 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:618642..621851 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G02000 vs. NCBI_GenBank
Match: EWM23413.1 (hypothetical protein Naga_100077g16 [Nannochloropsis gaditana])

HSP 1 Score: 454.1 bits (1167), Expect = 1.200e-123
Identity = 383/1191 (32.16%), Postives = 515/1191 (43.24%), Query Frame = 0 
Query:   44 ARQIQTVETYAPSCRNVRTCTS--------GRCQGFRPDVQSSSIDSGNSRSTTSSPSPSSTNS--ERDLAEQVVIRVAIELRQGMKKKRGTLSVRTLERKLEAALRQGSLLMPPSTTSPQLPSDVPTEKEDERKSRQLRTSTRKLLVALIRDLARFNIVPSFSFWHVLSIWLSPPLATLSISELATLTLALATLDVPEGSKPLLDAVLHAVCTHKKPPPHHFSTADGKQLCKALTLLQRPGGTFRAGSTPLLSWLLDLLQARDLVGEGRDAAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTRLVRRPLPVQPIFKPMRRQTALTSSVLHRRVADLLTSLGFACETEVGYGGLNLDLVLYPPPL-----PPAFSPLLPLIIEIDGPQHFVHGDPTRPTGATAARRRLLRSQYDLWAGLVAITYADEEEEXXXXXXXXXXXXXXXXXXXLDVVERKVREDGGIELAMYRAG-GIAPDN-----VITNDNEAGKEDE-----------------------QKEKWDVAKRLFLASSPEKLLDILRDDRNAGR---LDATHWATALARMSQFVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAK---------------------------GSIAKK--QRR-------GWYMGPEGVLRDVAHARELLQQSTFPALALMVEGLSDYYD--FEKYGXXXXXXXXXXXXXXXXXXXXSDALNLANMAVSRVKVLQR---------------------------GVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTLLRALSKLGYRSPSSLPVSSTILQGMARHGQLDSAALASVLDSLATIYLQ---RPFHSPAPASS--------------------FSSFCPSSLP--DDVSACLTTLLRSGESQLHDLRPRDLVSFVSAMALFKEA--------------------------SQLCPSFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGKGHICQTLPLADLALLTYKGPAEGDGEGGIISQRGRRKSLQWPLVGEVRRRLRALSPSALVSFMQQDMAQEDMVPAA---XXXXXXXXXXXXXXXXXXXXXXXRAFLIMLTNELYKQRTALTAREKSIASVHLRGWADIYDAGPRFWQRF 1069
            A     V  +    +++  CT+        G     +P  + S+  S +S  TT +P   S NS   RD  ++ V+++A  LRQ +KKK G+ SV  L+++LE ALR+  L    S++ P + S  P  K + +K+RQ   STR+LLVAL+RD AR+N+ P  +FW     WL+ P       E+A+L LALA LDVP GS+ LL+A L A CT +   P   + AD +Q CKALTLL+ PG TFR G    ++ LL  L+        R+  A                                                              TR VRRP  V        R  ALT S+LHRRV D L ++G  CE EV + GL LD+V+YPP +        F P LPL+IEIDGPQHF+HGDPTRPTGAT AR R +RSQ D WAGLV++T+AD + E                   L V+E KVRE  G+ELA YR G G A  N      +  +   G+E                         + + W+++KRL ++ S +++L ++ + R   R   LDA+H+ATAL R+++                                                                     GSI+ K  Q++        W  GP G+L +   A  ++ Q+ FPALAL++E +  +Y+   EK G                     + L +A  A++RV  L++                                                           LVT L A+S+LGY S  SLPVS++ +Q M   GQLD+ AL SVL SL  I L+    P   P   SS                    FS+   S LP  + V A +  L++    QLH L PRDLVSFV A+ LF+EA                          S L  SFS                               AAGK HI Q+L L+DLA+LT + PA+G+ E  + +QR RRKS QWPL+ +VRRRLR++SPSALV F+  ++    M   A                          RAFL+MLTNELYKQR ALT REK+     LR W DIYD G RFWQRF
Sbjct:   37 AAAFNPVPNFPKPFQSISKCTNYIKIMLVGGDSTDLKPLCRLSASLSTSSPVTTPTPILCSNNSHNSRDCVDRHVVKIASNLRQSLKKKSGSESVGILQKELEIALRKDCLDPSASSSVPGVKSKRP-RKTNWKKARQTHASTRRLLVALVRDFARYNVDPGVTFWSTFEAWLAFPRVIPPTGEIASLVLALAILDVPPGSEGLLNAGLQAACTERTASPRTMAVADAQQFCKALTLLRGPGATFRVGPAAGMARLLASLE--------REVRAA------------------------------------------KYPSRREDRTLVLPKQTSGTRWVRRPSHVSAPQAETERVPALTCSLLHRRVLDALRTVGLVCEDEVCHAGLRLDVVVYPPSIXXXXXXSLFRPRLPLVIEIDGPQHFIHGDPTRPTGATVARHRFVRSQQDQWAGLVSLTHADAQGE----------KGRTPVERLLAVLEAKVREQAGVELAGYRTGAGGAKGNGGEGERVEMEASGGRERRGGNAAAYEGKGKMEQGKTTYLGVEMQAWELSKRLLVSRSSQEVLSLVEEARQGHRSSFLDASHFATALTRLARISTRAPQPRLSRRSNKAGLRASNDRNADNRTHGTAGNATTTNYLSNSSSNDTIIDSDIDSFGNRESGIFGSISSKTGQKKESVNGCHRWVGGPAGLLGNTTQALAIIGQADFPALALLIEAMIPFYEGILEKRG----EKGGDGCADDSICETEREMLAVAEAAIARVAELEQRSMARAEEETRKEDGGTRPLPGEAIRYSAPKSSTGDRDAPCGIDLSSARYPEVLMTSWSLVTFLHAISRLGYHS-WSLPVSASRIQTMISRGQLDAPALVSVLTSLTMICLRISTPPATLPRTNSSCMLPDSPSMPISQRWELTFPFSTAATSILPSTEGVFAAVDALVQGSLGQLHLLSPRDLVSFVRAITLFEEAGYVLATSLDSRACHANALPSSDAGLPSFLPSSFSPYQDGIKAMRTGTSSLTPQPTRERLITSIVEAAGKPHISQSLSLSDLAVLTLRAPADGEHEEVVSNQRDRRKSPQWPLIKDVRRRLRSMSPSALVKFLLYELPVRSMTEGAWRQEPCTIRRQKFLRRTSLMLQPRPTRAFLMMLTNELYKQRAALTVREKASVIAQLRAWEDIYDPGTRFWQRF 1161
The following BLAST results are available for this feature:
BLAST of NO18G02000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23413.11.200e-12332.16hypothetical protein Naga_100077g16 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004056NSK004056Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G02000.1NO18G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604400gene_8893Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100077g16gene7051Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G02000.1NO18G02000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G02000 ID=NO18G02000|Name=NO18G02000|organism=Nannochloropsis oceanica|type=gene|length=3210bp
ATGGGAAGGTGGTCGGCCAGGGCGATACGTACTTTCCTCCTGCTTCTTGC
GACGCCGCTTGTTTCGACGAGGGGTACGTCATCATGTGCGGCGGTGGCTT
TCGTATGGCCGCCGCCGCCGCCGCAGCAAGCCAGGCAAATTCAGACTGTG
GAGACTTATGCACCTAGCTGTAGAAACGTTCGGACTTGCACGAGCGGCAG
ATGTCAAGGCTTTCGTCCCGATGTCCAATCTTCGAGCATAGACAGCGGCA
ACTCTCGTTCTACCACCTCCAGCCCAAGCCCTAGCAGCACCAACAGTGAA
CGCGATCTGGCAGAGCAAGTCGTTATTCGCGTAGCAATTGAGCTGCGGCA
GGGCATGAAGAAGAAACGCGGGACTTTATCTGTCAGAACACTGGAGCGAA
AGCTAGAGGCCGCCCTCCGTCAAGGCAGTCTGCTCATGCCCCCGTCCACT
ACATCTCCCCAACTACCCAGCGACGTCCCCACCGAAAAAGAGGATGAGAG
GAAAAGTCGGCAACTCCGCACCTCGACTCGCAAGCTCCTCGTCGCTCTTA
TTCGAGACCTTGCCCGGTTCAACATTGTCCCTTCCTTTTCTTTCTGGCAT
GTCTTAAGCATCTGGCTTTCCCCCCCCCTTGCCACTCTGTCCATCTCCGA
GCTCGCCACGCTCACTTTGGCCTTAGCCACATTAGACGTACCTGAGGGAA
GCAAGCCTCTGCTTGATGCTGTCCTCCACGCTGTGTGCACACACAAAAAG
CCCCCACCCCACCACTTTTCCACTGCTGACGGGAAGCAACTTTGCAAAGC
TCTCACTCTCCTCCAACGGCCCGGGGGTACCTTCCGAGCAGGATCTACAC
CGTTACTGTCCTGGCTTTTGGACTTACTTCAAGCAAGGGACTTAGTAGGA
GAAGGTAGAGACGCTGCAGCCACTGCTGCTACTGGGAGGAGCATTGCTGA
GAGTACTACTAGTAGTAGTATTGGTCGTCGTAGTAGTAGTATTGGTCGTA
GTAGTAGTAGTAGTAGTAGTCGAAGTAGTAGAAGAGGTAGCAACAGCAAT
AGTAGCTATGGTAGTAACAATAGTAGTTATGCTAGTAGCAGTGGTAGTAG
TAGTGATACAAGGCTGGTGCGTCGGCCTTTGCCGGTGCAACCTATATTCA
AGCCGATGAGACGACAGACTGCTCTTACTTCCTCAGTATTGCACAGGCGA
GTCGCGGATTTATTAACCTCTCTAGGCTTTGCCTGTGAGACCGAGGTTGG
CTACGGCGGTCTCAACCTTGACCTTGTCCTCTACCCTCCTCCCCTCCCTC
CTGCCTTCTCTCCTCTCCTCCCCCTCATCATCGAAATTGACGGCCCGCAG
CATTTTGTCCATGGCGACCCCACTCGTCCCACGGGTGCAACCGCGGCACG
TCGTCGCCTGCTTCGCTCTCAATACGATCTGTGGGCTGGCTTGGTGGCAA
TTACTTACGCAGATGAGGAGGAGGAAAGAGGAAGGGAGGGAGGGATAGGG
AGACAGGGAAGGAGAGGGCGGGCGGCGAGGTTGTTGGATGTGGTGGAGAG
GAAGGTGAGGGAGGATGGGGGGATAGAGTTGGCTATGTATCGAGCGGGCG
GAATAGCTCCGGATAATGTTATTACTAATGATAATGAGGCGGGTAAAGAG
GACGAGCAGAAAGAGAAGTGGGATGTAGCCAAACGTCTCTTCCTCGCGTC
ATCCCCTGAAAAGCTTTTAGATATCCTGCGTGACGACAGGAATGCAGGGA
GACTAGATGCCACCCATTGGGCAACGGCACTTGCGCGGATGTCGCAATTT
GTCAAGCACCACTATCATCAGCATCACCGGCGCGATCAGAGCAATAGTAC
CGGTAAAAAAGATAGCAGCAACGACAGCAGCTATGACACTAGTAGCACAG
GCAAGAAGAAAAGCGACGCGAAAGGAAGCATCGCCAAGAAACAACGCCGC
GGATGGTACATGGGTCCAGAAGGCGTGCTCCGTGATGTTGCCCATGCGCG
CGAGCTGCTACAACAGTCGACTTTTCCAGCCTTGGCCCTAATGGTCGAAG
GTTTGAGTGATTATTATGACTTTGAAAAATACGGGAAGCTAGAGGAAGAG
GACGAGGATGAAAATGATGAAAAGGAGAGGGGAAGGGATGGTGTGAGTGA
TGCGCTCAATCTAGCCAACATGGCCGTCTCGAGGGTGAAAGTACTGCAGC
GTGGGGTGAAGGAGGAGGAGAAGGAAAAGGAGGAGGAGCAGCAACAACAG
CAGCATCAAGGCATGCAGAGGAATAGCATCCTCATGACTTCCTCCAGCCT
CGTTACCCTCCTTCGCGCCCTCTCTAAGCTGGGCTATCGCTCCCCTTCGT
CGCTGCCTGTCTCTTCCACAATCCTACAAGGCATGGCCCGTCATGGCCAG
TTGGACTCGGCCGCGCTCGCCTCTGTGCTAGACAGTCTCGCTACCATTTA
TCTTCAGCGGCCATTTCACTCTCCTGCTCCTGCGTCTTCCTTTTCCTCTT
TCTGCCCCAGCTCTCTGCCTGATGACGTGTCCGCCTGCTTGACAACCCTC
CTTCGAAGCGGCGAAAGTCAGTTACACGATCTTCGTCCCCGTGACCTCGT
CTCCTTTGTCAGTGCCATGGCACTCTTCAAGGAAGCAAGCCAACTCTGCC
CTTCCTTCTCCTCCTCCTCTTCCTCAACGTTCTCTTCCTCTTCCTCACCA
GCAGCAGCAGTGGCAGCAGCAGACGAGGAACGATTGATTGCCGCCATTGT
AGGTGCAGCGGGGAAGGGCCATATATGCCAAACCCTCCCCTTGGCGGACT
TGGCTTTGCTAACTTACAAAGGACCGGCCGAAGGCGACGGAGAAGGAGGC
ATCATCAGCCAGCGTGGACGACGGAAGTCTTTACAGTGGCCTCTTGTCGG
GGAGGTTCGACGGCGGCTCCGCGCTTTATCACCCTCAGCGTTGGTATCTT
TCATGCAGCAAGACATGGCGCAGGAAGACATGGTGCCAGCAGCAGTGGCA
ACGGCGTCAGTCTCAAAATGGAAGACAAAGACAAAAAGCATGAGACGTCG
ACCACGGCCGACGCGTGCATTTTTGATAATGCTCACGAATGAGCTTTATA
AGCAGCGAACAGCGTTGACGGCACGAGAAAAAAGTATAGCATCAGTTCAT
CTTCGAGGCTGGGCCGATATCTACGATGCAGGCCCTCGATTCTGGCAACG
CTTTGAATAA
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protein sequence of NO18G02000.1

>NO18G02000.1-protein ID=NO18G02000.1-protein|Name=NO18G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1070bp
MGRWSARAIRTFLLLLATPLVSTRGTSSCAAVAFVWPPPPPQQARQIQTV
ETYAPSCRNVRTCTSGRCQGFRPDVQSSSIDSGNSRSTTSSPSPSSTNSE
RDLAEQVVIRVAIELRQGMKKKRGTLSVRTLERKLEAALRQGSLLMPPST
TSPQLPSDVPTEKEDERKSRQLRTSTRKLLVALIRDLARFNIVPSFSFWH
VLSIWLSPPLATLSISELATLTLALATLDVPEGSKPLLDAVLHAVCTHKK
PPPHHFSTADGKQLCKALTLLQRPGGTFRAGSTPLLSWLLDLLQARDLVG
EGRDAAATAATGRSIAESTTSSSIGRRSSSIGRSSSSSSSRSSRRGSNSN
SSYGSNNSSYASSSGSSSDTRLVRRPLPVQPIFKPMRRQTALTSSVLHRR
VADLLTSLGFACETEVGYGGLNLDLVLYPPPLPPAFSPLLPLIIEIDGPQ
HFVHGDPTRPTGATAARRRLLRSQYDLWAGLVAITYADEEEERGREGGIG
RQGRRGRAARLLDVVERKVREDGGIELAMYRAGGIAPDNVITNDNEAGKE
DEQKEKWDVAKRLFLASSPEKLLDILRDDRNAGRLDATHWATALARMSQF
VKHHYHQHHRRDQSNSTGKKDSSNDSSYDTSSTGKKKSDAKGSIAKKQRR
GWYMGPEGVLRDVAHARELLQQSTFPALALMVEGLSDYYDFEKYGKLEEE
DEDENDEKERGRDGVSDALNLANMAVSRVKVLQRGVKEEEKEKEEEQQQQ
QHQGMQRNSILMTSSSLVTLLRALSKLGYRSPSSLPVSSTILQGMARHGQ
LDSAALASVLDSLATIYLQRPFHSPAPASSFSSFCPSSLPDDVSACLTTL
LRSGESQLHDLRPRDLVSFVSAMALFKEASQLCPSFSSSSSSTFSSSSSP
AAAVAAADEERLIAAIVGAAGKGHICQTLPLADLALLTYKGPAEGDGEGG
IISQRGRRKSLQWPLVGEVRRRLRALSPSALVSFMQQDMAQEDMVPAAVA
TASVSKWKTKTKSMRRRPRPTRAFLIMLTNELYKQRTALTAREKSIASVH
LRGWADIYDAGPRFWQRFE*
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Synonyms
Publications