NO18G01900, NO18G01900 (gene) Nannochloropsis oceanica

Overview
NameNO18G01900
Unique NameNO18G01900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1699
Alignment locationchr18:587707..589405 +

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Properties
Property NameValue
DescriptionIron-sulfur cluster assembly protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:587707..589405 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0051536iron-sulfur cluster binding
GO:0051536iron-sulfur cluster binding
GO:0005506iron ion binding
Vocabulary: Biological Process
TermDefinition
GO:0016226iron-sulfur cluster assembly
GO:0016226iron-sulfur cluster assembly
Vocabulary: INTERPRO
TermDefinition
IPR034904FSCA_dom_sf
IPR001075NIF_FeS_clus_asmbl_NifU_C
Homology
BLAST of NO18G01900 vs. NCBI_GenBank
Match: EWM23395.1 (iron-sulfur cluster assembly protein [Nannochloropsis gaditana])

HSP 1 Score: 474.9 bits (1221), Expect = 3.200e-130
Identity = 291/505 (57.62%), Postives = 335/505 (66.34%), Query Frame = 0
Query:    4 LLGGISFFQQQQELVQAFLVLTPKTAPVT--IRHHSPSSSATNTATRPAALESSA--SGVSAVTAVAADDNVPEGHKGLHEFLYGDNNDHGATSXXXXXXXXXXXXXXXXXVAA-FLDRFKDVRLAAVYGVYDAKQTLQYVGVTRNVVVSLTGHLQVHGAEVVSSVALQSFKFPKREEMAAAQETWLAELSAAHIVPDGNRE-GGNGNGGWAKSIKEAVEQGSGSTAEERAAYEDTKTKLRTAMADPTLADELDDLDEEEEYGEEAEDERMFRRAQLKKAVEQSDWSGVIDGQTQATIKKQAPQEVAARAAPAAPAAVIVSPFNGG------------DSSSPSVSDGLLALTPENVDIVLEEVRPYLISDGGNIEIVSIDVAARDIFLRLQGACGSCPSSTTTMKMGVERVLREKFENLNRIEAISAEPQAVDEAGTPLTEAAALKRKLEGKLEEILPAIRGLGASATIEDVSEEGVVSLCYKGPEKVKLGVVYALKGQPGVTD 491
            LL G +   +QQ L +AFLV      P T  + H  PSSSA  T TRPA L+  A  S  +  + VAADDNVPEGHKGLHEFLYGD++ HG  +                  AA FL   +D RLAAVYGVYDA  TL+YVGVTRNVV++L GHLQ HG EVV+SVAL+SF++PKREEMAA Q +WL E++A    P+GNR  G  G+GGWAKSI+E VE G+G       A+ DTKTKLRTAMADPTL DEL+D                     LK AVE+SDWSG+I+GQT++TI      E    AA       I SPF  G                    +  L LTPENVD VLEEVRPYLI+DGGNIE+V ID+A RDIFLRLQGACGSCPSSTTTMKMGVERVLREKF  L  +EA+S  P +VDE GTPLTE AAL+RKLE KL EILPAIRGLGASA+I  VSEEGVV L Y+GPEKVK+GVVYALKG  GVT+
Sbjct:   19 LLLGSTLVSEQQLLTRAFLVPAALQNPSTLVLYHSPPSSSAAETVTRPAPLQVGAAESPGNVASGVAADDNVPEGHKGLHEFLYGDDDAHGTRAPPAGSTSTSFTRAQGPFPAASFLKDLQDTRLAAVYGVYDASGTLRYVGVTRNVVMALEGHLQAHGPEVVASVALESFRYPKREEMAAVQASWLEEVAATGQNPEGNRSVGEGGSGGWAKSIREVVESGAGL----GGAHADTKTKLRTAMADPTLRDELEDXXXXXXXXXXXXXXXXXXXXXLKAAVEESDWSGMIEGQTRSTI-----PEGTRDAAAKEGGGEITSPFREGXXXXXXXXXXXXXXXXXXXXEDTLELTPENVDRVLEEVRPYLIADGGNIEVVRIDLADRDIFLRLQGACGSCPSSTTTMKMGVERVLREKFTQLGSVEAVSDAPLSVDETGTPLTERAALERKLEEKLSEILPAIRGLGASASIGGVSEEGVVKLVYQGPEKVKMGVVYALKGMQGVTN 514          
BLAST of NO18G01900 vs. NCBI_GenBank
Match: XP_005707644.1 (iron-sulfur cluster scaffold protein [Galdieria sulphuraria] >EME31124.1 iron-sulfur cluster scaffold protein [Galdieria sulphuraria])

HSP 1 Score: 234.6 bits (597), Expect = 7.200e-58
Identity = 155/421 (36.82%), Postives = 230/421 (54.63%), Query Frame = 0
Query:   68 DDNVPEGHKGLHEFLYGDNNDHGATSXXXXXXXXXXXXXXXXXVAAFLDRFKDVRLAAVYGVYDAKQTLQYVGVTRNVVVSLTGHLQVHGAEVVSSVALQSFKFPKREEMAAAQETWLAELSAAHIVPDGNREGGNGNGGWAKSIKEAVE-QGSGSTAEERAAYEDTKTKLRTAMADPTLADELDDLDEEEEYGEEAEDERMFRRAQLKKAVEQSDWSGVIDGQTQATIKKQAPQEVAARAAPAAPAAVIVSPFNGGDSSSPSVSDGLLALTPENVDIVLEEVRPYLISDGGNIEIVSIDVAARDIFLRLQGACGSCPSSTTTMKMGVERVLREKFENLNRIEAISAEPQAVDEAGTPLTEAAALKRKLEGKLEEILPAIRGLGASATIEDVSEEGVVSLCYKGPEKVKLGVVYALKGQPG 488
            D+++PEGH+ LHE LY    +   T                  V  FL+  +D ++ AVY VYDA + ++++G++R+V  +L  H +      V+ + L+++ FP+R EM   Q+ W+AEL      P GN      +  WAKSIKEA +   S    E ++ YE+ K KLR AMADP+L DE              E   +F R     A+ + DWS VI+ Q+   ++        A  +P     V+ +     + S+ + ++    LT ENV++VL+EVRPYL SDGGN++++S+D   R++ L LQGACG+CPSSTTTMK+G+ER+LR++F N+     I A+ +       PL E      + E  LEEI PAI GLG S ++  V E   V L Y+GP+K+K G+  ALK + G
Sbjct:   58 DNSIPEGHRSLHETLYSRGEEEHKT-PSKQQVKFRSDGSNWLPVDLFLNGMEDEKVGAVYAVYDANRDIRFIGISRDVCFALKAHREALSDRDVAWLRLKTWDFPRRVEMEQCQKDWIAELG---FTPPGNITTNEESKLWAKSIKEATQLVASDVEPERKSTYEEKKFKLRKAMADPSLIDE--------------ESREIFERDPTIHAISEGDWSKVIEQQSNKVLQD-------AVTSPFESVEVVANNNRVDERSNSNTAESGSFLTVENVNLVLDEVRPYLESDGGNVKVLSVD-TNRNVVLLLQGACGTCPSSTTTMKLGIERILRQRFPNIGE---IVAQSEVASVTTIPLEE------RCESLLEEIRPAIIGLGGSISVSRV-ENNQVFLLYQGPDKIKYGIELALKEKLG 442          
BLAST of NO18G01900 vs. NCBI_GenBank
Match: CBJ29464.1 (iron-sulfur cluster assembly protein, similar to nifU [Ectocarpus siliculosus])

HSP 1 Score: 231.5 bits (589), Expect = 6.100e-57
Identity = 176/495 (35.56%), Postives = 249/495 (50.30%), Query Frame = 0
Query:   28 TAPVTIRHHSPSSSATNT------ATRPAALESSASGV--SAVTAVAADDNVPEGHKGLHEFLYGDNNDHGATSXXXXXXXXXXXXXXXXXVAAFLDRFKDVRLAAVYGVYDAKQTLQYVGVTRNVVVSLTGHLQVHGAEVVSSVALQSFKFPKREEMAAAQETWLAELSAAHIVPDGNREGGNGNGGWAKSIKEAVEQGSGSTAEERAAYEDTKTKLRTAMADPTLADELDDLDEEEEYGEEAEDERMFRRAQLKKAVEQSDWSGVIDGQTQATIKKQAPQEVAARAAPAAPAAVIVSPFNGGDSSSPSVSDGL---------------------------LALTPENVDIVLEEVRPYLISDGGNIEIVSIDVAARDIFLRLQGACGSCPSSTTTMKMGVERVLREKFENLNRIEAI-SAEPQAVDEAGTPLTEAAALKRKLEGKLEEILPAIRGLGASATIEDVSEEGVVSLCYKGPEKVKLGVVYALKGQP 487
            TA    R  +P +S +++      A R   L+S+      +A      D +VP+ H+GLH+FLY +  DHGAT+                 V+ +L    + + AAVY V    + + +VGV RNV +SL  HL   G  +V  + ++SFKFPKR++M A +  W+ E  +    P GN +G      WA   K+A  Q + S A ++ AYE+ K K+R A+ADP L +E + +  E+          + RR +L+ AVE  DWS VIDGQT+ T + +   +        AP A I+SPF+          DG+                           L  T ENVD VL+EVRPYLI+DGGN+ ++ +D+  R + L LQGACGSCPSSTTTMKMG+ERVL E F N+  +E +  A   A+ EA T + EA          LE + PA+  + A   +  V  +G V L Y G  KV  G+  AL   P
Sbjct:   29 TAAAVSRSRAPHASRSSSIPHRTAAGRGVVLQSTTDETTETAEEVRLEDRDVPQAHRGLHDFLYSNEEDHGATA--SDGSVELFDGTQLYEVSKWLKDNAESKHAAVYAVVGKDEKVNFVGVGRNVALSLAAHLAAEGESMVHMLKVRSFKFPKRDKMEALKAQWIEECGS---TPVGNIKGSE----WATGSKDA--QNAMSPA-QKEAYEENKLKMRKAIADPGLVEETEQMSSED----------IERRKRLESAVEDDDWSSVIDGQTKLTEEPKVEVD--------APTATIISPFSSDGMPVGVGPDGMAXXXXXXXXXXXXXXXXXXXXASECNDLEFTLENVDKVLDEVRPYLIADGGNVRVMGVDIDRRVVKLALQGACGSCPSSTTTMKMGIERVLNENFLNMGGVEQVDEASGNAMAEATTAVVEAI---------LEPLRPAMVAMRAKVEVLSVL-DGHVKLTYSGHRKVAYGIQMALLDNP 483          
BLAST of NO18G01900 vs. NCBI_GenBank
Match: CEM00986.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 221.1 bits (562), Expect = 8.300e-54
Identity = 163/458 (35.59%), Postives = 244/458 (53.28%), Query Frame = 0
Query:   48 RPAALESSASGVSAVTAVAADDNVPEGHKGLHEFLY--GDNNDHGATSXXXXXXXXXXXXXXXXXVAAFLDRFKDVRLAAVYGVYDAKQTLQYVGVTRNVVVSLTGHLQVHGAEVVSSVALQSFKFPKREEMAAAQETWLAELSAAHIVPDGNREGGNGNGGWAKSIKEAVEQGSGSTAEERAAYEDTKTKLRTAMADPTLADELDDLDEEEEYGEEAEDERMFRRAQLKKAVEQSDWSGVIDGQTQATIKKQAPQEVAARAAPAAP------------AAVIVSPFNGGDSSSPSVSDGL------LALTPENVDIVLEEVRPYLISDGGNIEIVSIDVAARDIFLRLQGACGSCPSSTTTMKMGVERVLREKFENLNRIEAISAEPQAVDEAGTPLTEAAALKRKLEGKLEEILPAIRGLGASATIEDVSEEGVVSLCYKGPE--KVKLGVVYALK 484
            +P+ ++   +   +++ +  D NVP+GH+GLH FLY  G  +D  A                   V  +L   ++ R+  VY V D  +++QYVGV+RNV V+L  H +      V+ V ++S+ +P+REEM A ++ W+ E      VP GN +    + G+A++IK+A     G   +ER  Y D K KLR AMAD TL DE  ++ EEE    EA          L  A++  DWS VIDGQT AT+    PQ + A+   A               A +VSPF  G     +V+         L LT +NVD VL++VRPYL +DGGN+ +V++D   + I L LQGACG+CPSS  T+KMG+ER+L+E + +LN +  +S +P +   A  PL     L   +E  LEE+   + G+GAS  + + +++G   L Y GP+  ++  G+   LK
Sbjct:   71 QPSPVDELIAEQPSLSPIQTDANVPDGHRGLHSFLYDDGKEDDAHAAKPAGSRGRVRFDGVNMYGVDRWLGMHREERVCGVYSVLDEDRSVQYVGVSRNVAVALESHRRQTPPGTVAFVRIKSWDYPRREEMDALRDEWIRESGR---VPPGNED---ASLGFAETIKDA--STDGMKDDERQQYHDNKLKLRRAMADNTLIDETPNIIEEEIMNREA----------LLHALKDDDWSAVIDGQTNATLN---PQLINAQLQEALKIGRDDTSTDTQGEANVVSPFAPGRQGDDAVAARTAEPAESLPLTVDNVDRVLDDVRPYLQADGGNVMVVAVDPTHKTISLALQGACGNCPSSQMTLKMGIERLLKETWPDLNDVVPVS-DPSSPHAAPAPLPFGVEL---IERHLEEVRWGLNGMGASCDVIE-AKDGRAVLRYAGPDPGRITFGIELMLK 502          
BLAST of NO18G01900 vs. NCBI_GenBank
Match: OAE22888.1 (hypothetical protein AXG93_3544s1000 [Marchantia polymorpha subsp. ruderalis] >PTQ27621.1 hypothetical protein MARPO_0190s0016 [Marchantia polymorpha])

HSP 1 Score: 210.3 bits (534), Expect = 1.500e-50
Identity = 166/429 (38.69%), Postives = 223/429 (51.98%), Query Frame = 0
Query:   62 VTAVAADDNVPEGHKGLHEFLYGDNNDHGATSXXXXXXXXXXXXXXXXXVA--AFLDRFKDVRLAAVYGVYDAKQTLQYVGVTRNVVVSLTGHLQVHGAEVVSSVALQSF---KFPKREEMAAAQETWLAELSAAHIVPDGNREGGNGNGGWAKSIKEAVEQGSGSTAEERAAYEDTKTKLRTAMADPTLADELDDLDEEEEYGEEAEDERMFRRAQLKKAVEQSDWSGVIDGQTQATIKKQAPQEVAARAAPAAPAAVIVSPFNGGDSSSPSVSDGLLALTPENVDIVLEEVRPYLISDGGNIEIVSIDVAARDIFLRLQGACGSCPSSTTTMKMGVERVLREKF-ENLNRIEAISAEPQAVDEAGTPLTEAAALKRKLEGKLEEILPAIRGLGASATIEDVSE-EGVVSLCYKGPEKVKLGVVYALK 484
            ++ V  DD VPEGHKGLH FLYG+      TS                 +    ++   + V+ + VYGV+++   L++VG +RNVV+SL  H    GAE  +SV ++ F       R ++   ++ WL  + AA I P  + E    N  W  S   A  Q    T EER  YE+ K K+R AM +    +  DD+D E       +D+    R +L +A E  DWS VIDGQT+ TIK   P          APAA IVSPF+     S   +D    LT ENVDIVL EVRPYLI+DGGN+E+VS+      + LRLQGACG+CPSSTTTMKMG+ERVL EKF E+L  +  +  +            E  A    +   L+ + PAI   G S  +  VS   G V + YKGP  + +G+  A+K
Sbjct:   77 LSGVVTDDAVPEGHKGLHGFLYGEGGADIHTSGIKEFAGRQGEDDGTTILGFEEYVAAREAVKFSGVYGVHNSNGGLEFVGYSRNVVLSLKTHRARVGAEKCASVRVKLFSVASIVSRAKLEEERKMWL--MFAAEIPPGNSHE----NHLWEGSSAAAPLQ--HMTEEERKEYEEKKLKMRKAMGE----NLYDDVDGE-------DDDAKTIRMKLLQATEGDDWSSVIDGQTKQTIK--PPPIAFDEVVDEAPAAQIVSPFSTSSKGSLYSADS-YELTVENVDIVLNEVRPYLIADGGNVEVVSLTDGV--VSLRLQGACGTCPSSTTTMKMGIERVLNEKFGESLKGVVQVDQQ------------EIGATLGGVNSHLDMLRPAIINYGGSVEVVSVSPCRGEVVVKYKGPAPIGMGIQAAIK 469          
BLAST of NO18G01900 vs. NCBI_GenBank
Match: ABR16650.1 (unknown [Picea sitchensis])

HSP 1 Score: 203.8 bits (517), Expect = 1.400e-48
Identity = 160/459 (34.86%), Postives = 236/459 (51.42%), Query Frame = 0
Query:   40 SSATNTATRPAALESSASGVSAVTAVAADDNVPEGHKGLHEFLYGDNND--HGATSXXXXXXXXXXXXXXXXXVAAFLDRFKDVRLAAVYGVYDAKQTLQYVGVTRNVVVSLTGHLQVHGAEVVSSVALQSFKFP---KREEMAAAQETWLAELSAAHIVPDGNREGGNGNGGWAKSIKEAVEQGSGSTAEERAAYEDTKTKLRTAMADPTLADELDDLDEEEEYGEEAEDERMFRRAQLKKAVEQSDWSGVIDGQTQATIKKQAPQEVAARAAPAAPAAVIVSPF-NGGDSSSPSVSDGLLALTPENVDIVLEEVRPYLISDGGNIEIVSIDVAARDIFLRLQGACGSCPSSTTTMKMGVERVLREKFENLNRIEAISAEPQAVDEAGTPLTEAAALKRKLEGKLEEILPAIRGLGASATIEDVSEEG-VVSLCYKGPEKVKLGVVYALKGQ-PGVTD 491
            SS+   +    A  +    + +++ V  D++VPEGH GLH FLYG+     HG+ +                    +++   ++  A VY +Y+ +  +QYVG  RNVV+SL  H+   G     SV ++ F  P    R  +   +  WL E     + P  + +    + G   SIK   E       EER  YE+ K KLR AM +  L DE++  DEE             RR  L +A E  DWSGVID QT+ T++++  +E           A I SPF + G S+S   S     LTPENVD+VL +VRPYL++DGGN+E+ S++     I LRLQGACG+CPSSTTTMKMG+ERVL+EKF +      +  E + VD+     T  +     +   L+ + PAI   G S  +E +S EG +  + Y GP+++ +G+  A+K + P +T+
Sbjct:   38 SSSLPKSANLKATHAQTPSLDSLSTVVTDESVPEGHAGLHGFLYGEKGSEVHGSQTQQITAKPGEDDGSSIIPFEDYVNTRGNLNFAGVYAIYNNEDQIQYVGYARNVVMSLKSHMDKVGPSRCCSVRVKIFTDPSLLSRGRLEQEKNKWLDEYG---LPPGNSTDQDLWDCGRVLSIKAMSE-------EERKDYEEKKLKLRKAMGE-NLYDEVEGEDEESS----------IRRLNLLRATEGDDWSGVIDRQTKETLEEKC-EETQXXXXXXQTNAGIASPFSDNGKSTSGLYSAVTHDLTPENVDLVLNDVRPYLVADGGNVEVASVEDGV--ISLRLQGACGTCPSSTTTMKMGIERVLKEKFGD------VLKEIRQVDQQNIHATVVS-----VNSHLDMLRPAIHNYGGS--VEVISIEGEICHVKYNGPDQIGVGIQAAIKDKFPEITN 459          
BLAST of NO18G01900 vs. NCBI_GenBank
Match: XP_024368329.1 (uncharacterized protein LOC112278792 [Physcomitrella patens] >PNR60304.1 hypothetical protein PHYPA_003097 [Physcomitrella patens])

HSP 1 Score: 186.4 bits (472), Expect = 2.300e-43
Identity = 153/456 (33.55%), Postives = 228/456 (50.00%), Query Frame = 0
Query:   50 AALESSASGVSAVTAVAADDNVPEGHKGLHEFLYGDNND--HGATSXXXXXXXXXXXXXXXXXVAAFLDRFKDVRLAAVYGVYDAKQTLQYVGVTRNVVVSLTGHLQVHGAEVVSSVALQSF---KFPKREEMAAAQETWLAELSAAHIVPDGNREGGNGNGGWAKSIKEAVEQGSGS-----TAEERAAYEDTKTKLRTAMADPTLADELDDLDEEEEYGEEAEDERMFRRAQLKKAVEQSDWSGVIDGQTQATIKKQAPQEVAARA--------APAAPAA--VIVSPFNGGDSSSPSV-SDGLLALTPENVDIVLEEVRPYLISDGGNIEIVSIDVAARDIFLRLQGACGSCPSSTTTMKMGVERVLREKFENLNRIEAISAEPQAVDEAGTPLTEAAALKRKLEGKLEEILPAIRGLGASATIEDV-SEEGVVSLCYKGPEKVKLGVVYALK 484
            A   +    + +++ V  DD VPEGHKGLH FLYG+     HG+                      ++   K  + A V+ +YD + +LQYV  +R+VV +L       G E  SSV ++ +       R ++   +++WL  L +A     GN            S ++ + +G+G+     + +E+  YE+ K KLR AM +    +  DD+  E       +D+   RR +L +AVE  DWS VIDGQT+ T+  +   EVA +          P A  A   IVSPF  G      + S      T ENVD VL+EVRPYLI+DGGN+E+V++      + LRLQGACG+CPSST+TMKMG+ERVL EKF ++ + E +  + Q +  +   + E           LE + PAIR  G S  +  V + +G   + Y GP  + +G+  A+K
Sbjct:   62 AKANTQGEALQSLSNVVTDDAVPEGHKGLHGFLYGEGGAEVHGSAGNKFNGVEGEDDGNAIILYEDYVSFRKSFKFAGVFAIYDFQDSLQYVNYSRHVVSTLRSLRARVGEEKCSSVRVKIYTDSSLITRAKLEEDKQSWLDSLGSA----PGN------------STEKHLWEGAGNNVALMSEQEKIEYEEKKLKLRKAMGE----NLFDDVAGE-------DDDTRTRRLKLLQAVEGDDWSSVIDGQTKQTLDPRVSSEVAVKEKSVHNVADEPMAAGADEQIVSPFASGSQVGGGLYSAETYEFTVENVDKVLDEVRPYLIADGGNVEVVAVKDGV--VSLRLQGACGTCPSSTSTMKMGIERVLMEKFGDVLK-EVVQVDKQDIGASVLAVDE----------HLEMLRPAIRNYGGSVEVVSVDTVKGECQVKYHGPAPIGMGIQAAIK 477          
BLAST of NO18G01900 vs. NCBI_GenBank
Match: XP_005647957.1 (NifU-domain-containing protein [Coccomyxa subellipsoidea C-169] >EIE23413.1 NifU-domain-containing protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 183.0 bits (463), Expect = 2.500e-42
Identity = 150/437 (34.32%), Postives = 212/437 (48.51%), Query Frame = 0
Query:   53 ESSASGVSAVTAVAADDNVPEGHKGLHEFLYGDNND--HGATSXXXXXXXXXXXXXXXXXVAAFLDRFKDVRLAAVYGVYDAKQTLQYVGVTRNVVVSLTGHLQVHGAE---VVSSVALQSFKFPKREEMAAAQETWLAELSAAHIVPDGNREGGNGNGGWAKSIKEAVEQGSGSTAEERAAYEDTKTKLRTAMADPTLADELDDLDEEEEYGEEAEDERMFRRAQLKKAVEQSDWSGVIDGQTQATIKKQAPQEVAARAAPAAPAAVIVSPFNGGDSSSPSVSDGLLALTPENVDIVLEEVRPYLISDGGNIEIVSIDVAARDIFLRLQGACGSCPSSTTTMKMGVERVLREKF-ENLNRIEAISAEPQAVDEAGTPLTEAAALKRKLEGKLEEILPAIRGLGASATIEDVSEEGVVSLCYKGPEKVKLGVVYALK 484
            E + +    V A+A D NVPEGHKGLH FLYG++    H                     V  +L   +  +   VY +YD+++ LQYVG  RN+ +++ GH    G E    V ++ + +     R  +      WLAE   A  +P GN        G  + + E     SG  A + A  E+   K+R AM +  LAD++         GE  + ++  RR  L +AVE  DWS VIDGQT  TI+       A     + P A      + GDS+     D    LTPE+V+  L+EVRPYLI+DGGN+E+ SI      ++LRLQGACG+CPSS  TMKMG+ER L+  F + L  +  + A   A D A             ++  L+ + PAI   GAS  +  VS  GV  + + GP  + +GV  A+K
Sbjct:   12 EGTVALPQGVGAIATDSNVPEGHKGLHGFLYGESGAEVHDDEGRDYQTREGEDDGTSLVPVERYLAVRQGEKPLGVYALYDSRRNLQYVGYARNMTMAIKGHAGRVGEERCAYVRALVVANRALMSRGHLEEQANNWLAE---AGTLPPGN--------GVERDLWEGTTPVSGLPAADVAVLEERALKMRKAMGE-NLADDV--------AGESVDSKQ--RRLNLIRAVEGDDWSSVIDGQTAQTIEDSGNGAEAPTHPASTPFARASVHRSIGDSAPAETPD----LTPESVNAALDEVRPYLIADGGNVEVASISDGV--VYLRLQGACGTCPSSAGTMKMGIERALQGAFGDKLKGVLQVDATSTASDLA------------SVDAHLDMLRPAIASYGASVQVLSVS-GGVCKVQFGGPPPIGMGVQAAIK 407          
BLAST of NO18G01900 vs. NCBI_GenBank
Match: XP_011399823.1 (NifU-like protein 1, chloroplastic [Auxenochlorella protothecoides] >KFM26875.1 NifU-like protein 1, chloroplastic [Auxenochlorella protothecoides])

HSP 1 Score: 173.7 bits (439), Expect = 1.500e-39
Identity = 147/445 (33.03%), Postives = 208/445 (46.74%), Query Frame = 0
Query:   68 DDNVPEGHKGLHEFLYGDNND--HGATSXXXXXXXXXXXXXXXXXVAAFLDRFKDVRLAAVYGVYDAKQTLQYVGVTRNVVVSLTGHLQVHGAEVVSSV---ALQSFKFPKREEMAAAQETWLAELSAAHIVPDGNREGGNGNGGWAKSIKEAVEQGSGSTAEERAAYEDTKTKLRTAMADPTLADELDDLDEEEEYGEEAEDERMFRRAQLKKAVEQSDWSGVIDGQTQ-------------ATIKKQAPQEVAARAAPAAPAAVIVSPFN--------GGDSSSPSVSDGLLALTPENVDIVLEEVRPYLISDGGNIEIVSIDVAARDIFLRLQGACGSCPSSTTTMKMGVERVLREKF-ENLNRIEAISAEPQAVDEAGTPLTEAAALKRKLEGKLEEILPAIRGLGASATIEDVSEEGVVSLCYKGPEKVKLGVVYALKGQ 486
            D  VPEGHK LH  LYG+     H +                   V A+L    D  L  VY +YDA +TLQYVG +RN+ +++ GH    G  + + V    +Q      +  ++A  + W+ E   A ++P GN E  N   G    +       S  + E R A+ + K K R AM         + +DE     E A D+   RR +L KAVE  DWS VID QT+             AT + Q+ +  +A  A A P   I SPF         G     P +      L  E VD  L EVRP+LI+DGGN+E+VS  V+   + L  QGACG+CPSS+ TM MG+ER LR  F   + +I  ++A+            +  A + +++  L  +  AI+  G S  ++ VS EGV  L Y GP  + +GV  A++ Q
Sbjct:    3 DATVPEGHKSLHGALYGEGGAEVHSSRKAGYQLIPGEDDGDVLIPVDAYLGHRNDASLLGVYALYDASETLQYVGFSRNMCLAIKGHRSRVGKRLAAHVRAKVVQRTSLQSKAALSAEAQRWIEE---ADVLPPGNGENRNEWEGTGLDV-------SLMSEEAREAHLEHKLKFRLAMG--------ESIDE-----EPATDDDAVRRLKLLKAVEGDDWSAVIDRQTEEVAASHSADLADAATPQSQSSEGGSAHGA-AQPPPPIASPFTQAAVHRQVGNQEPQPQI-----PLNAETVDHALNEVRPFLIADGGNVEVVS--VSGGVVSLEFQGACGTCPSSSATMSMGIERCLRATFGTQILQIVQVNAQ------------DTGATEVRVDDHLNMLRGAIQSYGGSVVVKSVS-EGVCKLLYNGPPAIAVGVRAAVRDQ 403          
BLAST of NO18G01900 vs. NCBI_GenBank
Match: XP_002968899.2 (uncharacterized protein LOC9651475 [Selaginella moellendorffii])

HSP 1 Score: 169.9 bits (429), Expect = 2.200e-38
Identity = 145/443 (32.73%), Postives = 214/443 (48.31%), Query Frame = 0
Query:   54 SSASGVSAVTAVAADDNVPEGHKGLHEFLYGDNND--HG-ATSXXXXXXXXXXXXXXXXXVAAFLDRFKDVRLAAVYGVYDAKQTLQYVGVTRNVVVSLTGHLQVHGAEVVSSVALQSFKFPK---REEMAAAQETWLAELSAAHIVPDGNREGGNGNGGWAKSIKEAVEQGSGSTAEERAAYEDTKTKLRTAMADPTLADEL-DDLDEEEEYGEEAEDERMFRRAQLKKAVEQSDWSGVIDGQTQATIKKQAPQEVAARAAPAAPAAVIVSPFNGGDSSSPSVSDGLLA-----LTPENVDIVLEEVRPYLISDGGNIEIVSIDVAARDIFLRLQGACGSCPSSTTTMKMGVERVLREKFENLNRIEAISAEPQAVDEAGTPLTEAAALKRKLEGKLEEILPAIRGLGASATIEDVS-EEGVVSLCYKGPEKVKLGVVYALK 484
            S+A  + +++ V +D+NVPEGH GLH FLYG+     HG   +                 + +++   + ++   VY VY   + ++YVG +RNVV+SL  H    G E  + V ++ F  P    +  +   ++ W+ EL A   VP GN         W+ S K  V + S                         + + L DD+D E+E       +   RR ++ +AVE  +WS VIDGQT  T+                   V VSPF   ++SS +   GL +      T ENVD VL+EVRPYL++DGGN+ +VS  VA   + L LQGACG+CPSST+TMKMG+ERVLREKF +  +      E   ++     LT  A     L G+++ +  AI G G    +  V   +G   + YKGP  + LG+  A++
Sbjct:   59 SAAERLQSLSGVVSDENVPEGHSGLHGFLYGEAGAEVHGDGAAKEFQGREGEDDGTSVLELESYVSARESIKFPGVYAVYGKNKAMEYVGFSRNVVLSLKTHRTRAGEERCAFVRVKLFGDPSLVTKSRLEEEKQRWIRELEA---VPPGN--SPEEQSLWSSSAK--VVETSXXXXXXXXXXXXXXXXXXXXXXXKAMGENLHDDVDGEDE-------DAKLRRLKILQAVEGDNWSSVIDGQTMETVGSXXXXXXXXXXXXXXXXXV-VSPFESSNTSS-TAGSGLYSTETYDFTAENVDKVLDEVRPYLVADGGNVAVVS--VADGTVSLELQGACGTCPSSTSTMKMGIERVLREKFGDAVK------EVVDINRPSVTLTFEA-----LNGQIDMLRSAIEGYGGVVQLATVDPAKGECQIKYKGPVPLGLGIKAAIR 472          
The following BLAST results are available for this feature:
BLAST of NO18G01900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23395.13.200e-13057.62iron-sulfur cluster assembly protein [Nannochlorop... [more]
XP_005707644.17.200e-5836.82iron-sulfur cluster scaffold protein [Galdieria su... [more]
CBJ29464.16.100e-5735.56iron-sulfur cluster assembly protein, similar to n... [more]
CEM00986.18.300e-5435.59unnamed protein product [Vitrella brassicaformis C... [more]
OAE22888.11.500e-5038.69hypothetical protein AXG93_3544s1000 [Marchantia p... [more]
ABR16650.11.400e-4834.86unknown [Picea sitchensis][more]
XP_024368329.12.300e-4333.55uncharacterized protein LOC112278792 [Physcomitrel... [more]
XP_005647957.12.500e-4234.32NifU-domain-containing protein [Coccomyxa subellip... [more]
XP_011399823.11.500e-3933.03NifU-like protein 1, chloroplastic [Auxenochlorell... [more]
XP_002968899.22.200e-3832.73uncharacterized protein LOC9651475 [Selaginella mo... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01900.1NO18G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604355gene_8880Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01900.1NO18G01900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01900 ID=NO18G01900|Name=NO18G01900|organism=Nannochloropsis oceanica|type=gene|length=1699bp
ATGGTCCTTTTGCTGGGTGGGATCAGCTTCTTCCAACAGCAACAAGAACT
CGTGCAGGCCTTCCTTGTCCTCACGCCCAAGACCGCTCCTGTCACCATCA
GGCACCACAGCCCTTCCTCCTCTGCCACCAACACGGCAACCCGCCCTGCC
GCCCTTGAAAGCTCCGCCTCGGGCGTTTCTGCGGTCACAGCCGTAGCTGC
GGATGACAATGTACCCGAGGGGCACAAGGGCCTGCACGAGTTTTTGTACG
GCGACAACAATGACCACGGGGCCACCTCTGCAGCGGCAGCAGAAGCGGAG
GCGTTCACACGGACCCAGACCCCGCTGCCCGTTGCCGCGTTTTTAGATCG
ATTCAAAGACGTGCGTTTGGCGGCTGTCTATGGTGTGTATGACGCGAAGC
AAACCTTGCAATATGTGGGGGTGACGCGCAACGTGGTTGTGTCGCTCACA
GGGCACCTACAGGTGCATGGGGCCGAGGTCGTCTCGTCCGTGGCGCTGCA
AAGTTTCAAATTTCCCAAGCGAGAAGAGATGGCCGCGGCGCAAGAAACTT
GGCTTGCAGAGCTCTCGGCTGCTCATATAGTCCCAGATGGGAACCGTGAG
GGAGGGAACGGGAATGGTGGTTGGGCAAAATCGATTAAGGAAGCGGTAGA
GCAGGGAAGTGGGAGTACGGCGGAGGAAAGGGCAGCTTACGAGGATACCA
AGACGAAGTTGAGGACAGCTATGGCTGATCCAACCTTGGCGGATGAATTG
GATGACTTGGACGAGGAGGAGGAGTACGGGGAGGAGGCGGAGGATGAGAG
GATGTTTAGGAGGGCCCAGTTAAAGAAGGCGGTGGAACAGAGTGACTGGT
CTGGTGTTATCGATGGACAGACCCAAGCAACGATCAAGAAGCAAGCACCA
CAGGAGGTAGCAGCACGAGCAGCACCCGCAGCACCAGCAGCGGTGATTGT
GAGCCCGTTCAATGGAGGTGATTCTTCTTCCCCTTCCGTGAGCGATGGTC
TCCTGGCGCTGACTCCTGAGAATGTAGATATAGTTTTAGAAGAAGTCCGG
CCCTACCTCATTTCAGATGGTGGCAACATCGAAATCGTCTCGATCGACGT
CGCCGCCCGCGACATCTTCCTTCGCCTTCAAGGTGCTTGCGGTTCCTGTC
CTTCTTCCACCACTACCATGAAGATGGGAGTCGAGCGCGTGCTCCGTGAA
AAATTTGAAAATTTGAATCGTATCGAAGCGATCTCAGCAGAGCCTCAAGC
GGTTGACGAGGCAGGGACGCCGCTGACAGAAGCAGCAGCACTGAAGAGGA
AATTGGAGGGGAAGTTAGAAGAAATTTTGCCGGCGATTCGAGGGTTGGGA
GCGTCTGCAACGATTGAGGACGTGAGCGAGGAAGGCGTGGTGAGTCTTTG
TTACAAGGGTCCAGAGAAGGTAAAATTGGGAGTGGTGTACGCTTTAAAGG
GGCAGCCAGGGGTGACGGATGTGAAGAgtgtatagatgcttctatccatc
cacttcttcggcggataggtagacaacaagacaagaaagatgctattaaa
tagtacaaaaagaatgacaaccatgacccaccctagCACTATCATCGACC
AGCTGCAGTAGCATGAGCAAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGTATACAACAACTAGCCAACCTAGGAAATGGAAAAGAATAG
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protein sequence of NO18G01900.1

>NO18G01900.1-protein ID=NO18G01900.1-protein|Name=NO18G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MVLLLGGISFFQQQQELVQAFLVLTPKTAPVTIRHHSPSSSATNTATRPA
ALESSASGVSAVTAVAADDNVPEGHKGLHEFLYGDNNDHGATSAAAAEAE
AFTRTQTPLPVAAFLDRFKDVRLAAVYGVYDAKQTLQYVGVTRNVVVSLT
GHLQVHGAEVVSSVALQSFKFPKREEMAAAQETWLAELSAAHIVPDGNRE
GGNGNGGWAKSIKEAVEQGSGSTAEERAAYEDTKTKLRTAMADPTLADEL
DDLDEEEEYGEEAEDERMFRRAQLKKAVEQSDWSGVIDGQTQATIKKQAP
QEVAARAAPAAPAAVIVSPFNGGDSSSPSVSDGLLALTPENVDIVLEEVR
PYLISDGGNIEIVSIDVAARDIFLRLQGACGSCPSSTTTMKMGVERVLRE
KFENLNRIEAISAEPQAVDEAGTPLTEAAALKRKLEGKLEEILPAIRGLG
ASATIEDVSEEGVVSLCYKGPEKVKLGVVYALKGQPGVTDVKTLSSTSCS
SMSKSSSSSSSSSSSSSIQQLANLGNGKE*
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Synonyms
Publications