NO18G01890, NO18G01890 (gene) Nannochloropsis oceanica

Overview
NameNO18G01890
Unique NameNO18G01890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5277
Alignment locationchr18:581768..587044 -

Link to JBrowse

Properties
Property NameValue
DescriptionRna-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:581768..587044 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR033133PUM-HD
IPR001313Pumilio_RNA-bd_rpt
Homology
[Close]
BLAST of NO18G01890 vs. NCBI_GenBank
Match: EWM23392.1 (rna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 536.2 bits (1380), Expect = 2.900e-148
Identity = 328/367 (89.37%), Postives = 338/367 (92.10%), Query Frame = 0 
Query:  867 ESLLLNGVSSPALKKRVERDPDILAALASATPSLEEILKSSTVHSLSQDQVGCRFLQLKLDEAGAEAATIIFSQAKPYMAEMMTDPFGNYLFQKILDKANESQRSIILSLVREDLVEGALNLHGTRSVQRILEVCKGVDQIATITSALRHDVVRLCVDANGNHVIQRALQHLGSEDRTFIFEAVSQACLEVSTHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTSCPLGRIASLSVQKYSSNVVEKCLEKASEDIQSAYIDEMCGPGNIKHLMQDQYANYVVQRALSVATHSRGLQLVEAVRPHLHAMRNTAGGRRILTKITKRFPNVDLGADMFLTG 1234
            ESLLLNGVSSPALKKRVERDPDILAALASATPSLEEILKSSTV SLSQDQVGCRFLQLKLDEAGAEAATIIF QAKP MAEMMTDPFGNYLFQKILDK +E +R+ ILSLV+++LV GALNLHGTRSVQRILEVC+  DQ+ATIT+ALRHDVVRLCVDANGNHVIQRALQHLGSEDR FIFEAVSQACLEVSTHR    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         VTSCPLGRI SLSVQKYSSNVVEKCLEKASEDIQSAYIDEMC PGNIKHLMQDQYANYVVQRALSVATHSRGL LVEAVRPHLHAMRNTAGGRRIL+KITKRFPNVDLGADM   G
Sbjct:  775 ESLLLNGVSSPALKKRVERDPDILAALASATPSLEEILKSSTVQSLSQDQVGCRFLQLKLDEAGAEAATIIFQQAKPCMAEMMTDPFGNYLFQKILDKTSEQERATILSLVQDELVSGALNLHGTRSVQRILEVCRTKDQVATITAALRHDVVRLCVDANGNHVIQRALQHLGSEDRAFIFEAVSQACLEVSTHRHGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCAADEIRPVTSCPLGRITSLSVQKYSSNVVEKCLEKASEDIQSAYIDEMCAPGNIKHLMQDQYANYVVQRALSVATHSRGLHLVEAVRPHLHAMRNTAGGRRILSKITKRFPNVDLGADMMAGG 1141
[Close]
BLAST of NO18G01890 vs. NCBI_GenBank
Match: CBJ31267.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 275.0 bits (702), Expect = 1.200e-69
Identity = 149/366 (40.71%), Postives = 217/366 (59.29%), Query Frame = 0 
Query:  880 KKRVERDPDILAALASATPSLEEILKSSTVHSLSQDQVGCRFLQLKLDE---------AGAE-----AATIIFSQAKPYMAEMMTDPFGNYLFQKILDKANESQRSIILSLVREDLVEGALNLHGTRSVQRILEVCKGVDQIATITSALRHDVVRLCVDANGNHVIQRALQHLGSEDRTFIFEAVSQACLEVSTHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTSCPLGRIASLSVQKYSSNVVEKCLEKASEDIQSAYIDEMCGPGNIKHLMQDQYANYVVQRALSVATHSRGLQLVEAVRPHLHAMRNTAGGRRILTKITKRFPNVDLGADMFL 1232
            +KR++R+ D+ A L +  P+L+++L    V+S+S+DQVGCR LQ KLDE         AG E     A + IF +A P ++ MM DPFGNYLFQK+  K ++ QR + +  V + + E A+NLHGTR VQ+++E+C+   Q A I  +L   VV+L +D NGNHV+QRALQH+ +    F+ EA++ + ++V+ HR                                                        + S PLG +ASLS QK+SSNV+E CLE+A  ++QS +++E+   G I+ L+ DQYANYVVQRAL+VA +  GL+LV A+RPHLH+M++T+ GRRI  KI KR+P VDLG ++ +
Sbjct:  361 RKRLDRESDMAALLEATRPALKDVL--GKVYSMSRDQVGCRLLQQKLDECPDRPPEGDAGKEPSEDDAVSAIFMEALPNLSMMMIDPFGNYLFQKLFVKVDDHQRLLAVEAVTDRMPEAAVNLHGTRCVQKVVELCRTDAQAAVIARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAITASLVQVAIHRHGCCVLQRCLDAAGPNLRIKLIEEVARNGLRLMQDPFGNYVVQYVLKTCSREETYMLCSAPLGHVASLSTQKFSSNVMEACLERALPEVQSKFVEELAQQGRIRELILDQYANYVVQRALTVANNEEGLKLVNAIRPHLHSMQSTSSGRRIAAKIIKRYPTVDLGEEILM 724
[Close]
BLAST of NO18G01890 vs. NCBI_GenBank
Match: ETI53297.1 (hypothetical protein F443_03721 [Phytophthora parasitica P1569] >ETI53298.1 hypothetical protein, variant [Phytophthora parasitica P1569])

HSP 1 Score: 258.8 bits (660), Expect = 9.000e-65
Identity = 160/403 (39.70%), Postives = 211/403 (52.36%), Query Frame = 0 
Query:  860 NMAGLGLESLLLNGVS-SPALKKRVERDPDILAALASATPSLEEILKSSTVHSLSQDQVGCRFLQLKLD-EAGAEAATIIFSQAKPYMAEMMTDPFGNYLFQKILDKANESQRSIILSLVREDLVEGALNLHGTRSVQRILEVCKGVDQIA-------------------------------TITSALRHDVVRLCVDANGNHVIQRALQHLGSEDRTFIFEAVSQACLEVSTHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTSCPLGRIASLSVQKYSSNVVEKCLEKASEDIQSAYIDEMCGPGNIKHLMQDQYANYVVQRALSVATHSRGLQLVEAVRPHLHAMRNTAGGRRILTKITKRFPNVDLGADM 1230
            N    G+   L+NG S S  +      DP  L    SA  S+E+I   + V ++S+DQ GCR LQ +LD E  A+   +I+ ++  ++AEMM DPFGNYLFQK+L++ NE QR +I+  V  +LV  ALNLHGTRSVQ+++EVC     +                                 I  AL+ D VRLC+D+NGNHVIQRALQ +  E   F+F+AV + C  V THR                                                        V   PLG I  LSVQK+SSNV+EKCLEKA E ++  YI E+     +  ++QDQ+ANYVVQRAL V    + L LV+A+RPHL AM+NT+GGRRI  +I KRFPN+D+  DM
Sbjct:  513 NAGANGMSLGLMNGGSMSAPMMGGSANDPSSL----SAALSVEDI--QNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSPDVIEEDYEDEEGEDYGYVREERPEGGRRTTSLPDLIVEALKDDAVRLCIDSNGNHVIQRALQFMKPEYNQFVFDAVCKECTTVGTHRHGCCVLQRCLDAANKTQKAEVIEQVERQAMKLMQDPYGNYVVQYVLDSCTAEEAFGVIMKPLGHIYELSVQKFSSNVIEKCLEKAPERVRQKYIAEITNCPKMNKMLQDQFANYVVQRALCVCAEEQCLLLVKAIRPHLAAMKNTSGGRRITARILKRFPNMDISMDM 909
[Close]
BLAST of NO18G01890 vs. NCBI_GenBank
Match: ETK93140.1 (hypothetical protein L915_03621 [Phytophthora parasitica] >ETK93141.1 hypothetical protein, variant [Phytophthora parasitica] >ETP23103.1 hypothetical protein F441_03704 [Phytophthora parasitica CJ01A1] >ETP23104.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 258.8 bits (660), Expect = 9.000e-65
Identity = 160/403 (39.70%), Postives = 211/403 (52.36%), Query Frame = 0 
Query:  860 NMAGLGLESLLLNGVS-SPALKKRVERDPDILAALASATPSLEEILKSSTVHSLSQDQVGCRFLQLKLD-EAGAEAATIIFSQAKPYMAEMMTDPFGNYLFQKILDKANESQRSIILSLVREDLVEGALNLHGTRSVQRILEVCKGVDQIA-------------------------------TITSALRHDVVRLCVDANGNHVIQRALQHLGSEDRTFIFEAVSQACLEVSTHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTSCPLGRIASLSVQKYSSNVVEKCLEKASEDIQSAYIDEMCGPGNIKHLMQDQYANYVVQRALSVATHSRGLQLVEAVRPHLHAMRNTAGGRRILTKITKRFPNVDLGADM 1230
            N    G+   L+NG S S  +      DP  L    SA  S+E+I   + V ++S+DQ GCR LQ +LD E  A+   +I+ ++  ++AEMM DPFGNYLFQK+L++ NE QR +I+  V  +LV  ALNLHGTRSVQ+++EVC     +                                 I  AL+ D VRLC+D+NGNHVIQRALQ +  E   F+F+AV + C  V THR                                                        V   PLG I  LSVQK+SSNV+EKCLEKA E ++  YI E+     +  ++QDQ+ANYVVQRAL V    + L LV+A+RPHL AM+NT+GGRRI  +I KRFPN+D+  DM
Sbjct:  513 NAGANGMSLGLMNGGSMSAPMMGGSANDPSSL----SAALSVEDI--QNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSPDVIEEDYEDEEGEDYGYVREERPEGGRRTTSLPDLIVEALKDDAVRLCIDSNGNHVIQRALQFMKPEYNQFVFDAVCKECTTVGTHRHGCCVLQRCLDAANKTQKAEVIEQVERQAMKLMQDPYGNYVVQYVLDSCTAEEAFGVIMKPLGHIYELSVQKFSSNVIEKCLEKAPERVRQKYIAEITNCPKMNKMLQDQFANYVVQRALCVCAEEQCLLLVKAIRPHLAAMKNTSGGRRITARILKRFPNMDISMDM 909
[Close]
BLAST of NO18G01890 vs. NCBI_GenBank
Match: XP_008900933.1 (hypothetical protein PPTG_08566 [Phytophthora parasitica INRA-310] >XP_008900934.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETL46560.1 hypothetical protein L916_03564 [Phytophthora parasitica] >ETL46561.1 hypothetical protein, variant [Phytophthora parasitica] >ETL99698.1 hypothetical protein L917_03485 [Phytophthora parasitica] >ETL99699.1 hypothetical protein, variant [Phytophthora parasitica] >ETN13875.1 hypothetical protein PPTG_08566 [Phytophthora parasitica INRA-310] >ETN13876.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETP51100.1 hypothetical protein F442_03700 [Phytophthora parasitica P10297] >ETP51101.1 hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 258.8 bits (660), Expect = 9.000e-65
Identity = 160/403 (39.70%), Postives = 211/403 (52.36%), Query Frame = 0 
Query:  860 NMAGLGLESLLLNGVS-SPALKKRVERDPDILAALASATPSLEEILKSSTVHSLSQDQVGCRFLQLKLD-EAGAEAATIIFSQAKPYMAEMMTDPFGNYLFQKILDKANESQRSIILSLVREDLVEGALNLHGTRSVQRILEVCKGVDQIA-------------------------------TITSALRHDVVRLCVDANGNHVIQRALQHLGSEDRTFIFEAVSQACLEVSTHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTSCPLGRIASLSVQKYSSNVVEKCLEKASEDIQSAYIDEMCGPGNIKHLMQDQYANYVVQRALSVATHSRGLQLVEAVRPHLHAMRNTAGGRRILTKITKRFPNVDLGADM 1230
            N    G+   L+NG S S  +      DP  L    SA  S+E+I   + V ++S+DQ GCR LQ +LD E  A+   +I+ ++  ++AEMM DPFGNYLFQK+L++ NE QR +I+  V  +LV  ALNLHGTRSVQ+++EVC     +                                 I  AL+ D VRLC+D+NGNHVIQRALQ +  E   F+F+AV + C  V THR                                                        V   PLG I  LSVQK+SSNV+EKCLEKA E ++  YI E+     +  ++QDQ+ANYVVQRAL V    + L LV+A+RPHL AM+NT+GGRRI  +I KRFPN+D+  DM
Sbjct:  513 NAGANGMSLGLMNGGSMSAPMMGGSANDPSSL----SAALSVEDI--QNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSPDVIEEDYEDEEGEDYGYVREERPEGGRRTTSLPDLIVEALKDDAVRLCIDSNGNHVIQRALQFMKPEYNQFVFDAVCKECTTVGTHRHGCCVLQRCLDAANKTQKAEVIEQVERQAMKLMQDPYGNYVVQYVLDSCTAEEAFGVIMKPLGHIYELSVQKFSSNVIEKCLEKAPERVRQKYIAEITNCPKMNKMLQDQFANYVVQRALCVCAEEQCLLLVKAIRPHLAAMKNTSGGRRITARILKRFPNMDISMDM 909
[Close]
BLAST of NO18G01890 vs. NCBI_GenBank
Match: ETM52854.1 (hypothetical protein L914_03589 [Phytophthora parasitica] >ETM52855.1 hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 258.8 bits (660), Expect = 9.000e-65
Identity = 160/403 (39.70%), Postives = 211/403 (52.36%), Query Frame = 0 
Query:  860 NMAGLGLESLLLNGVS-SPALKKRVERDPDILAALASATPSLEEILKSSTVHSLSQDQVGCRFLQLKLD-EAGAEAATIIFSQAKPYMAEMMTDPFGNYLFQKILDKANESQRSIILSLVREDLVEGALNLHGTRSVQRILEVCKGVDQIA-------------------------------TITSALRHDVVRLCVDANGNHVIQRALQHLGSEDRTFIFEAVSQACLEVSTHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTSCPLGRIASLSVQKYSSNVVEKCLEKASEDIQSAYIDEMCGPGNIKHLMQDQYANYVVQRALSVATHSRGLQLVEAVRPHLHAMRNTAGGRRILTKITKRFPNVDLGADM 1230
            N    G+   L+NG S S  +      DP  L    SA  S+E+I   + V ++S+DQ GCR LQ +LD E  A+   +I+ ++  ++AEMM DPFGNYLFQK+L++ NE QR +I+  V  +LV  ALNLHGTRSVQ+++EVC     +                                 I  AL+ D VRLC+D+NGNHVIQRALQ +  E   F+F+AV + C  V THR                                                        V   PLG I  LSVQK+SSNV+EKCLEKA E ++  YI E+     +  ++QDQ+ANYVVQRAL V    + L LV+A+RPHL AM+NT+GGRRI  +I KRFPN+D+  DM
Sbjct:  513 NAGANGMNLGLMNGGSMSAPMMGGSANDPSSL----SAALSVEDI--QNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSPDVIEEDYEDEEGEDYGYVREERPEGGRRTTSLPDLIVEALKDDAVRLCIDSNGNHVIQRALQFMKPEYNQFVFDAVCKECTTVGTHRHGCCVLQRCLDAANKTQKAEVIEQVERQAMKLMQDPYGNYVVQYVLDSCTAEEAFGVIMKPLGHIYELSVQKFSSNVIEKCLEKAPERVRQKYIAEITNCPKMNKMLQDQFANYVVQRALCVCAEEQCLLLVKAIRPHLAAMKNTSGGRRITARILKRFPNMDISMDM 909
[Close]
BLAST of NO18G01890 vs. NCBI_GenBank
Match: ETO81978.1 (hypothetical protein F444_03793 [Phytophthora parasitica P1976] >ETO81979.1 hypothetical protein, variant [Phytophthora parasitica P1976])

HSP 1 Score: 258.8 bits (660), Expect = 9.000e-65
Identity = 160/403 (39.70%), Postives = 211/403 (52.36%), Query Frame = 0 
Query:  860 NMAGLGLESLLLNGVS-SPALKKRVERDPDILAALASATPSLEEILKSSTVHSLSQDQVGCRFLQLKLD-EAGAEAATIIFSQAKPYMAEMMTDPFGNYLFQKILDKANESQRSIILSLVREDLVEGALNLHGTRSVQRILEVCKGVDQIA-------------------------------TITSALRHDVVRLCVDANGNHVIQRALQHLGSEDRTFIFEAVSQACLEVSTHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTSCPLGRIASLSVQKYSSNVVEKCLEKASEDIQSAYIDEMCGPGNIKHLMQDQYANYVVQRALSVATHSRGLQLVEAVRPHLHAMRNTAGGRRILTKITKRFPNVDLGADM 1230
            N    G+   L+NG S S  +      DP  L    SA  S+E+I   + V ++S+DQ GCR LQ +LD E  A+   +I+ ++  ++AEMM DPFGNYLFQK+L++ NE QR +I+  V  +LV  ALNLHGTRSVQ+++EVC     +                                 I  AL+ D VRLC+D+NGNHVIQRALQ +  E   F+F+AV + C  V THR                                                        V   PLG I  LSVQK+SSNV+EKCLEKA E ++  YI E+     +  ++QDQ+ANYVVQRAL V    + L LV+A+RPHL AM+NT+GGRRI  +I KRFPN+D+  DM
Sbjct:  513 NAGANGMSLGLMNGGSMSAPMMGGSANDPSSL----SAALSVEDI--QNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSPDVIEEDYEDEEGEDYGYVREERPEGGRRTTSLPDLIVEALKDDAVRLCIDSNGNHVIQRALQFMKPEYNQFVFDAVCKECTTVGTHRHGCCVLQRCLDAANKTQKAEVIEQVERQAMKLMQDPYGNYVVQYVLDSCTAEEAFGVIMKPLGHIYELSVQKFSSNVIEKCLEKAPERVRQKYIAEITNCPKMNKMLQDQFANYVVQRALCVCAEEQCLLLVKAIRPHLAAMKNTSGGRRITARILKRFPNMDISMDM 909
[Close]
BLAST of NO18G01890 vs. NCBI_GenBank
Match: KUF86672.1 (Pumilio domain-containing protein C6G9.14 [Phytophthora nicotianae])

HSP 1 Score: 258.8 bits (660), Expect = 9.000e-65
Identity = 160/403 (39.70%), Postives = 211/403 (52.36%), Query Frame = 0 
Query:  860 NMAGLGLESLLLNGVS-SPALKKRVERDPDILAALASATPSLEEILKSSTVHSLSQDQVGCRFLQLKLD-EAGAEAATIIFSQAKPYMAEMMTDPFGNYLFQKILDKANESQRSIILSLVREDLVEGALNLHGTRSVQRILEVCKGVDQIA-------------------------------TITSALRHDVVRLCVDANGNHVIQRALQHLGSEDRTFIFEAVSQACLEVSTHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTSCPLGRIASLSVQKYSSNVVEKCLEKASEDIQSAYIDEMCGPGNIKHLMQDQYANYVVQRALSVATHSRGLQLVEAVRPHLHAMRNTAGGRRILTKITKRFPNVDLGADM 1230
            N    G+   L+NG S S  +      DP  L    SA  S+E+I   + V ++S+DQ GCR LQ +LD E  A+   +I+ ++  ++AEMM DPFGNYLFQK+L++ NE QR +I+  V  +LV  ALNLHGTRSVQ+++EVC     +                                 I  AL+ D VRLC+D+NGNHVIQRALQ +  E   F+F+AV + C  V THR                                                        V   PLG I  LSVQK+SSNV+EKCLEKA E ++  YI E+     +  ++QDQ+ANYVVQRAL V    + L LV+A+RPHL AM+NT+GGRRI  +I KRFPN+D+  DM
Sbjct:  469 NAGANGMSLGLMNGGSMSAPMMGGSANDPSSL----SAALSVEDI--QNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSPDVIEEDYEDEEGEDYGYVREERPEGGRRTTSLPDLIVEALKDDAVRLCIDSNGNHVIQRALQFMKPEYNQFVFDAVCKECTTVGTHRHGCCVLQRCLDAANKTQKAEVIEQVERQAMKLMQDPYGNYVVQYVLDSCTAEEAFGVIMKPLGHIYELSVQKFSSNVIEKCLEKAPERVRQKYIAEITNCPKMNKMLQDQFANYVVQRALCVCAEEQCLLLVKAIRPHLAAMKNTSGGRRITARILKRFPNMDISMDM 865
[Close]
BLAST of NO18G01890 vs. NCBI_GenBank
Match: XP_009528622.1 (hypothetical protein PHYSODRAFT_545979 [Phytophthora sojae] >EGZ14873.1 hypothetical protein PHYSODRAFT_545979 [Phytophthora sojae])

HSP 1 Score: 255.8 bits (652), Expect = 7.600e-64
Identity = 152/371 (40.97%), Postives = 202/371 (54.45%), Query Frame = 0 
Query:  895 SATPSLEEILKSSTVHSLSQDQVGCRFLQLKLD-EAGAEAATIIFSQAKPYMAEMMTDPFGNYLFQKILDKANESQRSIILSLVREDLVEGALNLHGTRSVQRILEVC-----------------------------KGVDQIAT------ITSALRHDVVRLCVDANGNHVIQRALQHLGSEDRTFIFEAVSQACLEVSTHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTSCPLGRIASLSVQKYSSNVVEKCLEKASEDIQSAYIDEMCGPGNIKHLMQDQYANYVVQRALSVATHSRGLQLVEAVRPHLHAMRNTAGGRRILTKITKRFPNVDLGADM 1230
            SA  S+E+I   + V ++S+DQ GCR LQ +LD E  A+   +I+ ++  ++AEMM DPFGNYLFQK+L++ NE QR +I+  V  +LV  ALNLHGTRSVQ+++EVC                             +G ++  T      I  AL+ D VRLC+D+NGNHVIQRALQ +  E   F+F+AV + C  V THR                                                        V   PLG I  LSVQK+SSNV+EKCLEKA E ++  YI E+     +  ++QDQ+ANYVVQRAL V    + L LV+A+RPHL AM+NT+GGRRI  +I KRFPN+D+  DM
Sbjct:  444 SAALSVEDI--QNRVFAMSKDQNGCRLLQEQLDYEDRADLCEVIYQESLEHLAEMMVDPFGNYLFQKLLERVNEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSPDVIEEDYDDDDGDEYGYVNDREERPEGGERRRTTSLPDIIVEALKDDAVRLCIDSNGNHVIQRALQFMKPEYNQFVFDAVCKECTTVGTHRHGCCVLQRCLDAANKAQKAEVIEQVERQAMKLMQDPYGNYVVQYVLDSCTAEEAFGVIMKPLGHIYELSVQKFSSNVIEKCLEKAPERVRQKYIAEITSCPKMNKMLQDQFANYVVQRALCVCAEEQCLLLVKAIRPHLAAMKNTSGGRRITARILKRFPNMDISMDM 812
[Close]
BLAST of NO18G01890 vs. NCBI_GenBank
Match: XP_002898624.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY63101.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 252.3 bits (643), Expect = 8.400e-63
Identity = 148/371 (39.89%), Postives = 198/371 (53.37%), Query Frame = 0 
Query:  895 SATPSLEEILKSSTVHSLSQDQVGCRFLQLKLD-EAGAEAATIIFSQAKPYMAEMMTDPFGNYLFQKILDKANESQRSIILSLVREDLVEGALNLHGTRSVQRILEVCKGVDQIA--------------------------------TITSALRHDVVRLCVDANGNHVIQRALQHLGSEDRTFIFEAVSQACLEVSTHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTSCPLGRIASLSVQKYSSNVVEKCLEKASEDIQSAYIDEMCGPGNIKHLMQDQYANYVVQRALSVATHSRGLQLVEAVRPHLHAMRNTAGGRRILTKITKRFPNVDLGADMFLT 1233
            SA  S+++I   + V ++S+DQ GCR LQ +LD E   +   +I+ ++  ++AEMM DPFGNYLFQK+L++  E QR +I+  V  +LV  ALNLHGTRSVQ+++EVC     +                                  I  AL+ D VRLC+D+NGNHVIQRALQ +  E   F+F+AV + C  V THR                                                        V   PLG I  LSVQK+SSNV+EKCLEKA E ++  YI E+     +  ++QDQ+ANYVVQRAL V    + L LV+A+RPHL AM+NT+GGRRI  +I KRFPN+D+  DM L+
Sbjct:  455 SAALSVDDI--QNRVFAMSKDQNGCRLLQEQLDYEDRGDLCDVIYQESLEHLAEMMVDPFGNYLFQKLLERVKEKQRLVIIRRVSSNLVAAALNLHGTRSVQKVVEVCATSSSVIEEDFDEEEEGEEYGYEERPEGGKGRRTTSLPDLIVEALKDDAVRLCIDSNGNHVIQRALQFMKPEYNQFVFDAVCKECTTVGTHRHGCCVLQRCLDAANKTQKAEVIAQVERQAMKLMQDPYGNYVVQYVLDSCTAEEAFGVIMKPLGHIYELSVQKFSSNVIEKCLEKAPERVRQKYIAEITSCPKMNKMLQDQFANYVVQRALCVCAEEQCLLLVKAIRPHLAAMKNTSGGRRITARILKRFPNMDISMDMGLS 823
The following BLAST results are available for this feature:
BLAST of NO18G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23392.12.900e-14889.37rna-binding protein [Nannochloropsis gaditana][more]
CBJ31267.11.200e-6940.71conserved unknown protein [Ectocarpus siliculosus][more]
ETI53297.19.000e-6539.70hypothetical protein F443_03721 [Phytophthora para... [more]
ETK93140.19.000e-6539.70hypothetical protein L915_03621 [Phytophthora para... [more]
XP_008900933.19.000e-6539.70hypothetical protein PPTG_08566 [Phytophthora para... [more]
ETM52854.19.000e-6539.70hypothetical protein L914_03589 [Phytophthora para... [more]
ETO81978.19.000e-6539.70hypothetical protein F444_03793 [Phytophthora para... [more]
KUF86672.19.000e-6539.70Pumilio domain-containing protein C6G9.14 [Phytoph... [more]
XP_009528622.17.600e-6440.97hypothetical protein PHYSODRAFT_545979 [Phytophtho... [more]
XP_002898624.18.400e-6339.89conserved hypothetical protein [Phytophthora infes... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004042NSK004042Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01890.1NO18G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626281gene_8877Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100189g10gene7061Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01890.1NO18G01890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01890 ID=NO18G01890|Name=NO18G01890|organism=Nannochloropsis oceanica|type=gene|length=5277bp
AGAGGAAAGTATCCATCCGTCCAATTGACTCTTCCTTCGCTTACCAAGCA
GAAGCAGCTGCAGCTTTCTGGCACATTTTAGCACGGCTTGCACAGCCCTT
TACTGATGGGACCACGAGGCCTGAGACAGAGACAAGAAAGCAGGCGAGGC
CTTGCTGACCTCTGATTAGATAAAATGATGATGGCTTGATCATTTTGCTT
CACTCGCATCCCACCACCTCAACAAAAGGAAGCGACTCTTTGGTTGATCA
TCAACATGCCTGATTGACGCCCGGGCAAAGCCCTGGGAGATTTGTGATAT
CCTGGGCAATTTTAGTGGTCACAAGCCCCTGACTATGTCGCTCTTCCTCA
TGTCCTTTAAGTGGGGGATGTGCGAGATGGGCTGTGCTGTTTTGGTGACC
CTGCGGCATGGACATTTCAGCACTTGCCTTCAGCTGAAGGGGAACAGTGA
GGGCGACGGATGTTGGGGCTGTTGTTCCATTGCAATGGGATAAACGAATC
TTACCACATCAAAATGTCCTTGGTGCGCTGACTAGACACATATACACTCA
GGCCCTCTCACTGCGCCGGCCAGAACAGCCCTCTTTCCAGCGGGTCTGGG
TAGCGGCGGGTTGGGGGAAAGCCACGCATCAGAAGGCCAAGGCGCTCTCT
GATACGCCTTTGCGTGCCTTGCCACACACATTAAATGCAGGATATCCTTG
GACGTACTCACTCACGCGGCATGCATGGCTGCAATAGCATCATGGCAGAG
AGCGCCGCATAATTGACTTACCCCTCCCTCCTTCCTCTGTGATACGCCGA
TACACTCCACCAGGCTTTGTATTCTAAAAGCTTCGTAGTCAGCCTGGACT
CCCGCAAGCCCAGCATCTCCACCTTGACAAAGTATTTGTAAGCAGCACTA
GCAGTAGTGCAGCAGCAGCGACCGCGCCCTTCACTGgtacgtgcttggat
atggatgcaggcagagggggggggataggctgtgcggaagggtgtgggac
atgaattgtgggcattggtgctttgccgcgaggacccgcgcagctttgtg
gtgttgactgatctaccgtccatagaatttgttctggagttaccgtttgt
tgccctcgccctctccttcaatcatgctctctgcctggatgcaattccct
ctctcatcaaacctcatctgcatcacacgcacagcctctcacattcccgt
ccatcacactttcatctcttcacagGCAGCCCGAGCGATTGCTAACAGGA
TAGTTAGCAGGAGGAGTACAGGAGCAGTATGGGCGGCGATGTATTAGTAG
GAATGGACGCCGGCCACCACCACCCGCACCTCAAGCAATCGTCACAGCAG
CAGCAGCAGCAGCAGCAGCCGCAACGGGAGGAGGAGGAGGGGGAAGAGGA
GGAGGAACAGCAGCAAGGTGGTAGCATTAGCGGTGACCGTGATCACTCCC
TATCCCCTGAACACCGCCCGCAGCCCAGCAGTAGCAGCAGCAACAGCAAT
AGCCCCACCCTCTCCTCCCTCCTCTCCAAGCCCGCTAGCGCGGCGCCAGG
CGGACCACTAGCAGGGAGCACCTCTCCCGCAGGCACCTCTCCGCAGACCA
CCACCTCGGCCGCTTCCTCCCTTTACGGATCCAACTCTGGCTCCGGGTCT
GATTCTGACCGGGAGGGGAACAGCAACAGCAGGAGCAGCAGCAGGAGCAG
CAGCAGCAGCAGCAGCAGGAGCAGCAGCAACAGCAGCGACAGCTTGGTTA
AGGGGGGACTTGGGCATCACTTGGGCTCTGCTTCAGGAGCAGTAGGAGTG
GGGGGGATTGCTATCCGTGCCTCTCCATCTATCTCTCCCTCCCCTGCCGA
CTACCTCCTGGGCAATACCACCCCTACGGGCAGCCGCACCCGTGGGGCGG
AAGGGAGTAGTCCTGTCCTTGAGGGGCCTTTTGGCGCAAGCTTATTTGGG
GGCTTTCACTCAACTTCATCTCCGGAGCAGCAGCGCCAGAAGCAGGAGCA
GATTAATAACAAAGGCAATGAGAGGAGATCGGCGTCTTTGTCCCCTCCTC
CTCCTCTGTCGGTGCATGATGCTGTGAGCGTGTTTGGTTCCACGGGAAGT
AGCAGCAGCAGGCTCTCACTCAACGGCGGCGCGAACCACAACAGCGGCAG
CAGCACCAGTAAAGGAGGGACCGGGGGAGGGATGGATGGGCGTGGACTGT
TCAATTTCCAAAACATGGAATATGAGCTTGTGGACTTGGCTGAAGCGACG
GGATATGGTTCCAACAACAACAATAGCAGCAGCAACAGCAGCAACAACAA
CAGCGGCAGTAGCAACAACAATAGCAACACCAGCACCAGCACCACCAGCA
CCACCAGCAACAACAGCACCAACAGCAACAAGAGCGGTAGGAACAGTAAG
AATACTGCCGAGCAGCAGGATACGTCTCCGCAGCAGCAGCAGCAGCAGCA
GCAGCAGTTGGGTGAGATCAAGAAGCCCACGGCGCTCAGCCGTGGGAGTG
CCTTTGCTGCCTTTGCTCCTGCGGTGGACAGTCCTACGGGGCCTGCGGGG
GGAGGCAGCAAGTACACCACCTCCTCTGCGTCCTCCTCATCCGCCTCCTC
CCCTTCCTCCTCTGCATCCTCCTCTACCTCCTCGGGAGCTTCCGGTCTGC
CTGCCTCATCCGCGGCGGCTCGGCCTTTGCCCCTCCCCCTAAGAGCAGGA
GGAGTAGGGGGGGAACAGGTCGGACAGCAATCCCATCCTACCTCCACCTC
CGCCTTCTTCCAGCCCCAGGATCAGCAGCAGTTGCAGTTTAATGGACTGC
AGCATTACATGCAGTCAGTGGGTGGCCAGACCGGCGATAATGAAGACCGG
CACTCTCCCCTCCATCAGCACCAGCAGCAGTACCACCAACAGCAGCAGTA
CCAGCAGCAGCAACAGACAGCCAACGGCGCCATGCGCTTTTACCTCCCTG
CTGATTTTGATGGCTCCCCAGCCATGTTTGCGGCAGCCTTCCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGACGACAGCAGC
GGGTGGATCAGAGACGTTGCCTACTCATTTGATCACGACGGCAGGGACGA
TGCCTTTGAATCCGACCATAGCTCTCCACCACCAGCAGCAGCAGAACGGC
AGCGCCCCCTTCTCGCACCTGATGCGCGCATTGAACAGTGGAAATGGTGT
TACTAACAGTAATAGTAGCAGCAGCAACAACAACAGCAGCAGCAGTAGTG
GGTTAGACGGACTGACATACGGTCCTGGCGGCCTCCCGCTCCTGGTCGCA
AATGGGGGAGTAGCAGGCCTGAACGCTCACACAGCCATGCTCCTCCATCA
GCATCAACAGCACCTGCAGTTGCAACAGCAAAAGATGCCGAAGGGTGGGC
GCTCTGCCCACGGCTCGTCGGGAGAAATGAATGGCAGTGATAACTCCTCT
CCTACCGGCTTTCCCTCCGCTTCCTCGTCGTTGTCCTATAAGGATGTAAT
GGGCCCGCATAATGCCTTTTTCTATGGAGGAGGGGGGTTAGGACGAGGGG
GTGAAGGAGGGTTTGGCACCCGTCGTGGTGGAGGTCGTGATCGGAGCGAC
AGGCGTAGCTTGGGTGGGATGGGGGGGGGTATGGGGATGGGAAGCAGCAG
CAGCAGCAGCAACAATAACAACAACAACAACAACATCATCATCAACAACA
ACAACAACAACAACAACAGCAGCAGCAGCAGCAATGGCGGGTCTGGGATC
GGCCTGATGGGGGGAGGAATGGGCCCAGGGATGGGGGGAGGGATGGGGGC
GACAGCGGCGGCTAGCCTGAGTAGTATGTTGGCGGGCTTGGGAGCGCTGG
GAGGGAATATGGCGGGGCTTGGTCTGGAGAGCCTTCTCCTTAATGGCGTG
TCGTCGCCGGCGCTGAAGAAGCGTGTAGAGCGCGATCCGGACATCTTGGC
TGCCTTGGCCTCAGCTACTCCTTCCCTGGAAGAGATTCTCAAGAGCTCGA
CTGTGCACTCTCTTTCTCAAGACCAGGTGGGCTGTCGGTTCCTCCAGTTG
AAATTGGACGAGGCAGGGGCGGAGGCGGCGACGATCATTTTTTCGCAGGC
CAAGCCATACATGGCTGAGATGATGACGGACCCGTTCGGGAACTACTTGT
TTCAAAAGATATTGGACAAGGCGAACGAGAGCCAGCGGTCGATCATCCTG
TCCCTGGTGAGGGAGGACTTAGTGGAGGGGGCGTTGAATTTGCATGGCAC
GAGGTCGGTGCAGCGGATTTTGGAGGTATGCAAGGGGGTGGATCAGATTG
CGACGATAACGAGTGCCCTAAGGCATGACGTGGTGCGGTTGTGCGTGGAT
GCGAACGGGAACCATGTAATTCAACGGGCATTGCAGCATTTGGGCTCCGA
GGATCGGACGTTCATCTTTGAGGCGGTCAGCCAGGCGTGTTTGGAAGTGA
GCACGCACAGACACGGATGTTGTGTGATGCAGCGCTGTTTGGATGCAGCG
ACACCGTTGCAGCGCCGGGCATTGGTGGCTGAAATTGGGCGCAATTGCCT
CCAGCTAATGCAGGACCCCTATGGGAATTATGTCGTGCAGTACGTTCTGG
ATCGATGTGCATCGGATGAGATTCGGCCGGTGACCTCATGCCCGCTGGGA
CGGATCGCGTCTCTGTCGGTCCAGAAGTATAGCAGTAACGTGGTGGAAAA
ATGCCTGGAGAAGGCATCGGAGGACATCCAATCAGCTTATATCGACGAGA
TGTGCGGTCCGGGTAATATTAAACATTTGATGCAAGACCAGTATGCGAAT
TACGTGGTACAGCGTGCCTTGTCCGTGGCCACCCACTCGCGAGGCCTTCA
ACTGGTGGAGGCTGTGAGGCCTCACTTGCACGCCATGAGGAACACGGCGG
GAGGAAGAAGGATCCTGACAAAGATCACCAAGAGATTTCCCAACGTTGAT
TTGGGGGCAGATATGTTCTTGACGGGGGTAGGGGGAGGGATGATGATGGG
CGGGGGAGGGTATGGAGGAGGGGGAGGGCAAAATCCTCACTTTGGGCATC
AGATGGATGGAGGGGGGGGATATGGTGGACAGCGTCAGCACTTGCAGCAC
CAACAACAGCACCATCATCAGCAGCAGCTGCAGCAACCGCTGTCGTCGCT
CCACCACCACCACCAGCAGCAGCAGCAGCAGCATCACCCCCTGCATCAAC
CCTTTGGTTTCCACCCCCATCACCAGCAGCAGCAGCAGCAGCAGCAGTTT
GGAGGGCAGTACTGTGGGCTTCGTTAA
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protein sequence of NO18G01890.1

>NO18G01890.1-protein ID=NO18G01890.1-protein|Name=NO18G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1333bp
MGGDVLVGMDAGHHHPHLKQSSQQQQQQQQPQREEEEGEEEEEQQQGGSI
SGDRDHSLSPEHRPQPSSSSSNSNSPTLSSLLSKPASAAPGGPLAGSTSP
AGTSPQTTTSAASSLYGSNSGSGSDSDREGNSNSRSSSRSSSSSSSRSSS
NSSDSLVKGGLGHHLGSASGAVGVGGIAIRASPSISPSPADYLLGNTTPT
GSRTRGAEGSSPVLEGPFGASLFGGFHSTSSPEQQRQKQEQINNKGNERR
SASLSPPPPLSVHDAVSVFGSTGSSSSRLSLNGGANHNSGSSTSKGGTGG
GMDGRGLFNFQNMEYELVDLAEATGYGSNNNNSSSNSSNNNSGSSNNNSN
TSTSTTSTTSNNSTNSNKSGRNSKNTAEQQDTSPQQQQQQQQQLGEIKKP
TALSRGSAFAAFAPAVDSPTGPAGGGSKYTTSSASSSSASSPSSSASSST
SSGASGLPASSAAARPLPLPLRAGGVGGEQVGQQSHPTSTSAFFQPQDQQ
QLQFNGLQHYMQSVGGQTGDNEDRHSPLHQHQQQYHQQQQYQQQQQTANG
AMRFYLPADFDGSPAMFAAAFQQQQQQQQQQQQQQQRTTAAGGSETLPTH
LITTAGTMPLNPTIALHHQQQQNGSAPFSHLMRALNSGNGVTNSNSSSSN
NNSSSSSGLDGLTYGPGGLPLLVANGGVAGLNAHTAMLLHQHQQHLQLQQ
QKMPKGGRSAHGSSGEMNGSDNSSPTGFPSASSSLSYKDVMGPHNAFFYG
GGGLGRGGEGGFGTRRGGGRDRSDRRSLGGMGGGMGMGSSSSSSNNNNNN
NNIIINNNNNNNNSSSSSNGGSGIGLMGGGMGPGMGGGMGATAAASLSSM
LAGLGALGGNMAGLGLESLLLNGVSSPALKKRVERDPDILAALASATPSL
EEILKSSTVHSLSQDQVGCRFLQLKLDEAGAEAATIIFSQAKPYMAEMMT
DPFGNYLFQKILDKANESQRSIILSLVREDLVEGALNLHGTRSVQRILEV
CKGVDQIATITSALRHDVVRLCVDANGNHVIQRALQHLGSEDRTFIFEAV
SQACLEVSTHRHGCCVMQRCLDAATPLQRRALVAEIGRNCLQLMQDPYGN
YVVQYVLDRCASDEIRPVTSCPLGRIASLSVQKYSSNVVEKCLEKASEDI
QSAYIDEMCGPGNIKHLMQDQYANYVVQRALSVATHSRGLQLVEAVRPHL
HAMRNTAGGRRILTKITKRFPNVDLGADMFLTGVGGGMMMGGGGYGGGGG
QNPHFGHQMDGGGGYGGQRQHLQHQQQHHHQQQLQQPLSSLHHHHQQQQQ
QHHPLHQPFGFHPHHQQQQQQQQFGGQYCGLR*
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Synonyms
Publications