NO18G01790, NO18G01790 (gene) Nannochloropsis oceanica

Overview
NameNO18G01790
Unique NameNO18G01790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3206
Alignment locationchr18:557939..561144 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:557939..561144 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G01790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004031NSK004031Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01790.1NO18G01790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01790.1NO18G01790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01790 ID=NO18G01790|Name=NO18G01790|organism=Nannochloropsis oceanica|type=gene|length=3206bp
ATGGACAAGGATCGGCGTTCCCACAATGATTCGGCGCCGCCACCTCCCAC
CGACAGCAAAAAGCGCCTTTTGCATCCAGCTACCTCTGCCTGTTCCTCCA
CCTCCATTTGGCACCTCCCTCCGGGCGGGCCAGGACCCCGCGCTCGAGCC
CGTTTGGCCCTTCATGCCAGTATTAATCACCCACTTCCCGAGTCGACAAA
GCAGCGTTTGAATGATATTGCCATGTCCTGGCGTCTAGATCCTTGGTCCC
GTGCTCCTCCGGCACGCTGTACGCTATACCCCTCCCCCCCTCCACCTATT
GGCGGTACCATTCCTCCTCCTCATCATGCGTTAGTGAATTCCCCGGCAGC
TGTTCCAGAGCCTGCATCATTGCATTGCGTAGCATCGCCAGTAGCAGCAC
GACGAGCGACGCAAACACGACCACTTCCTTTATCGTCATCACCGTCTGTA
GCAGCAACTGTAGCAGTAACAGCACCAGCACCATCACCAGCACCAGCATC
TTACTCGCGCGTTAATACTACCGTAGTAATCGCCTCTTCTTCATCAGTAC
AATCGGTGCCATCCGTGGGACAGCGAGATGCAACAATTGCACTCACCACC
ACCACTGATGCCTGTAGTTCCATGAATATGGGCCAGGGCCACCAAAAGGA
GCAACAACAGCAGCAGCGAGAGCCACAGAAAGAACAATCAAAATCTAAGC
CCCCCAAGCCACCACGTCGACCCTTTGTATTTTTAGGGATGGCTTCATCT
CAGCCTGGTCAAGGGGATATCACTTTATTAGTGGCTGAGCTTCCGCCGAA
CCCGTGCGATATAGCAGCAGCGGCAGCAGCAGCAGCAGCACCAGTATCAG
GAGCACCAATTCAATCACCGCCAACAATAGGAACAGATCGATCTGACTTT
GCGCTACACTGGCAGTTGCCCTCCCCCTCTCCTTCTTCTTCTCCTTCTCC
TTCGTCTGATCCCTCTCCACCTCTACAGCTCGCAGGCCACTGGCACCTCC
TCCTCGCCCGTCTGAGCAACAGCAGCATCAGCAGAAAGAGCAGCAAAAGC
AGCAAAAGCAGCGCTGACAATTCTCTCAAAGCTTCGTTCAAGAGCCCCGT
CAGCATTACCCTCCCTTCCTTCCTCTCTCCCTCCCCCCCTTCCTCCATGG
CCCTCACCAACCCCCTGCCAGGCCTGCAGCTGCTGCTCGACTACTACTCC
CCCTCCCCCTCTTCTTCCCTCCATACCCCTTTCTCCTCCTTCTCCCCCTC
CTCCTGTAGCCGTCTTCTCTTCACTCCCTCACAACAAATAGCCCTCTCTT
CTCTCCAAGCGTGTTCTTGGGCGGAAAAAGCAGTCTTAGGGATCCTACTT
GTCACGGGGAAGCTGCCCTCCCTCCCGCCCTCCCTCCCGCTCCCTGAATC
CAAAAGAGTTAAGGCGAAGCGGGAAAACAAGGGTTGTGCTGCTTCTGGTG
CTCATCCTGCCGCTGTCACTGGAGACGTATGTCTCCACGAGTATCTACAG
CAGCAACAGCAACAGCGATTGGTTGCGCCTTCCATGGTCTGGGTCCTCCT
CCTTCTCCTGGCGCAGCAGCAGCAGCAAGAGCAAGAGGAGGGAAACGACG
CTCATATATCCTTCTTCCCCCCTTTTCGTCCTCCGATTCCTCCTTCCATG
CCTTCTCCTCCCCCCTTTTCGTCCTGTCGTCACTACTTCCGCCTCGTCGA
CAAGCAGGGGCCCGTCTACGCCTTCTCCCTCTCCCTTGACGACAACGCCA
GCAGCAGCAGCAGCAGTAAGGACAAGAGCAAAGCCGACAGCGGGGGGAGT
TCTTCCTGCTTCCCCTCCTTCTCCGTTGCCGCCGCGGCTGCCCTCCTTCT
CCTCACCTCCCTTCACAATCAAGGCCTCCTCCTCTTCACTCCCCTCTCCT
CGTCCACCCCTTCCACCCTCCCTTCCTCGTCCTCCCCCGGCACATGGTCT
GTGCATCCCGCCCTCCTTCAAGCTCTAGGCCGCCTTGCTTTCCTTTACAC
GGGCGTGTGGGAGTTCCAGGGAGGGAGGGAGGGAGGAGGGGAGGAGCGAC
TGGGACAGCAGGCCCGGTGGTATGCATCAACGCTGTCGCTGCTGGGTGGG
CAGATCTTGGGCTTGTTCGCGAGCCCTTCTTCGCTCCCTTCCTCTCCCCC
TTCTTCATCCTCGTCCTCCTCGTCGGTGAAGCTACAGGCGGGCGAAAACG
AGAGAGGAGGGGACGGAGGAGGAGAAGAAGGCAGGGAGGGAGGAGGAGGA
GGAATAGGAGGAGGAGGAGGGCTAGCCCCTTTGTTCGTGTCAAGAGAACA
CCTGGAACGTGTGCTGGAAGCTCGGCGTTGGCGCTGCCGGGTGGTGGAAG
GGATTGAGCGAGGGAGGGCTCGAGGAAGGGGGGGAAGGAGAGCAAGAGCA
CAGACAGGAAGGAGGTCGCTGGAGGAGCTAGAGAGGATGGGGAAGGAGGA
AGAGGAGGAGGACAGGCGGGAGGTGGCAATGGTGGTGCATGTGGTGGACA
TGATGCGGGAGGTCCTGTGGTTGCGTGATGCGGGCCTTTCCTCCTTCCCT
TCCTCCCGCCCCCCCTCCCTTGGATTTCGCCCGTGCATCCTCCGGCAAAT
CCATGAAGAGACCAGCCGGCGCCTTGCTCGCCTCTCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTTCTTCTTCTTCTTCCCTCCCTCGCCCTCTCGCAGGG
CCGCCTTCCCCTGCTCCTCCTCCCCTCCCCCCCTCCCTCCCTCCTTCCCT
CCCTCACCCTCTCGCGGGGCACATCACTGAATTAGTTTATTCCTCCACGT
GGCAGTACCTCCGTGGCCTCTTCGCCATCGCCTTCTTTTTCGTGCACAAA
CGCCGCTGTGCCCACACCTCCTTGCCCTCCCTCCCTCCCTCCACCACCCC
TGCCTGCATCGCGTCCTCCCTCCTGGCCTTCCTCCTCTCCCTGGACTCGC
CCTGGGTGCCCTACACGGCCGGCGTGAGGAGAGAAGGGTGGGTGGCTCAA
GTGAGACTCCAGTGGCTGTGTCTCTATTCTAGGGGGCAGGAAGGGGAGGG
AGGAAGGAAGGGAGGGAGGGAACGGTTGCGGGAGATGTTGGAGGAGGCGG
TGGAAGGGGATTACATGAGGGAGGTGGCGGGGGGGATCGATTGGCGATGG
AGAGGGGGAGGAAGAGGTTGAGGAAGGGGCTGGGGGAGGGAGAGAGGACG
ACGACC
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protein sequence of NO18G01790.1

>NO18G01790.1-protein ID=NO18G01790.1-protein|Name=NO18G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1057bp
MDKDRRSHNDSAPPPPTDSKKRLLHPATSACSSTSIWHLPPGGPGPRARA
RLALHASINHPLPESTKQRLNDIAMSWRLDPWSRAPPARCTLYPSPPPPI
GGTIPPPHHALVNSPAAVPEPASLHCVASPVAARRATQTRPLPLSSSPSV
AATVAVTAPAPSPAPASYSRVNTTVVIASSSSVQSVPSVGQRDATIALTT
TTDACSSMNMGQGHQKEQQQQQREPQKEQSKSKPPKPPRRPFVFLGMASS
QPGQGDITLLVAELPPNPCDIAAAAAAAAAPVSGAPIQSPPTIGTDRSDF
ALHWQLPSPSPSSSPSPSSDPSPPLQLAGHWHLLLARLSNSSISRKSSKS
SKSSADNSLKASFKSPVSITLPSFLSPSPPSSMALTNPLPGLQLLLDYYS
PSPSSSLHTPFSSFSPSSCSRLLFTPSQQIALSSLQACSWAEKAVLGILL
VTGKLPSLPPSLPLPESKRVKAKRENKGCAASGAHPAAVTGDVCLHEYLQ
QQQQQRLVAPSMVWVLLLLLAQQQQQEQEEGNDAHISFFPPFRPPIPPSM
PSPPPFSSCRHYFRLVDKQGPVYAFSLSLDDNASSSSSSKDKSKADSGGS
SSCFPSFSVAAAAALLLLTSLHNQGLLLFTPLSSSTPSTLPSSSSPGTWS
VHPALLQALGRLAFLYTGVWEFQGGREGGGEERLGQQARWYASTLSLLGG
QILGLFASPSSLPSSPPSSSSSSSSVKLQAGENERGGDGGGEEGREGGGG
GIGGGGGLAPLFVSREHLERVLEARRWRCRVVEGIERGRARGRGGRRARA
QTGRRSLEELERMGKEEEEEDRREVAMVVHVVDMMREVLWLRDAGLSSFP
SSRPPSLGFRPCILRQIHEETSRRLARLSPPPPPPPPPSSSSSLPRPLAG
PPSPAPPPLPPSLPPSLPHPLAGHITELVYSSTWQYLRGLFAIAFFFVHK
RRCAHTSLPSLPPSTTPACIASSLLAFLLSLDSPWVPYTAGVRREGWVAQ
VRLQWLCLYSRGQEGEGGRKGGRERLREMLEEAVEGDYMREVAGGIDWRW
RGGGRG*
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Synonyms
Publications