NO18G01770, NO18G01770 (gene) Nannochloropsis oceanica

Overview
NameNO18G01770
Unique NameNO18G01770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length666
Alignment locationchr18:555153..555818 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:555153..555818 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01770.1NO18G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|657052gene_8863Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01770.1NO18G01770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01770 ID=NO18G01770|Name=NO18G01770|organism=Nannochloropsis oceanica|type=gene|length=666bp
ATGCTGCGTTATGTTGAATGCAACCACCCAAAGAACCATTCCCATTTATG
TTGCCTTTCAATATTGCACTGCGTATGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCGCCGCAGCAGCAAG
TCTGTGTTGCCGCCTCGTTCGTTCTCTTTCTGCGCGTTTCAACCCCTTCT
TCGTCTCAACTCGATTCTCTTCCCTCCCACCCTTCCCCCTACAGGCACGA
CCACGGAACGCGCACGGCACAAACCTTGTAAAATAGAAACAAACAGAAAA
GAGGCTGTAAAAATGTCGCGTTGGTCCTCCTCCTCCTCTTCCCCATCCGC
CGCCGCCGCCCTCATCGATGAAAGTATGCGCGTCGAAGTCGACCTCAAAT
TGCGCGACAAAGAATTTTCGCTCCTTCGAGACCTCGTGGATGGAGCACAT
GCCTTTGCGCCCATAATAACAGAGATGGGGATATTGGCTAAATTGGCCTT
GGTGGGGGCGGGGGGGCTGGTGTGTGTGTGGGGAGGGAGCGCCTTTTGCA
AGGCGGTGGTGACTCCGTTTAGGAGGAGGGAAGGGAGGAAGGGAGGACGG
AGGAGGAGGAGGAACGAGTGGACTGAAATGGAGGATGATGGGGGTGGAAA
GGAGGATGAGTTGTGA
back to top

protein sequence of NO18G01770.1

>NO18G01770.1-protein ID=NO18G01770.1-protein|Name=NO18G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MLRYVECNHPKNHSHLCCLSILHCVCSSSSSSSSSSSSSSSSSSNRRSSK
SVLPPRSFSFCAFQPLLRLNSILFPPTLPPTGTTTERARHKPCKIETNRK
EAVKMSRWSSSSSSPSAAAALIDESMRVEVDLKLRDKEFSLLRDLVDGAH
AFAPIITEMGILAKLALVGAGGLVCVWGGSAFCKAVVTPFRRREGRKGGR
RRRRNEWTEMEDDGGGKEDEL*
back to top
Synonyms
Publications