NO18G01750, NO18G01750 (gene) Nannochloropsis oceanica

Overview
NameNO18G01750
Unique NameNO18G01750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1165
Alignment locationchr18:550994..552158 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:550994..552158 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005680anaphase-promoting complex
Vocabulary: Biological Process
TermDefinition
GO:0030071regulation of mitotic metaphase/anaphase transition
GO:0031145anaphase-promoting complex-dependent catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR018860APC_suCDC26
Homology
The following BLAST results are available for this feature:
BLAST of NO18G01750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01750.1NO18G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100472g6gene7075Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01750.1NO18G01750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01750 ID=NO18G01750|Name=NO18G01750|organism=Nannochloropsis oceanica|type=gene|length=1165bp
CTGGTCAGAGGCAAAGCGATGTCGACCACGATACCACAGGAAGGATAGTA
GATGGCCCACACAGACCACAGGAGGTAGTCGCCGTTGCATCGTCGGCGCG
TTTTGAAACAAGTCAGTCTCAAGTCAAGTTGTTCTTTTTGCCTTTGTCGT
CTCTAACACAAACCACGCTATTACGTGCGCACACGGACTACCAGGCTATC
AAGGCGCACGTATAGAAACCGGGCACATTTCCCCCGCACACCATCTCGTA
CAGTCAGACGCGCCAACCAGGCAAGAAGCCCTCAGCACCATCATCATACA
AGCAAGTAAAATGCTGCGCCGTCCTCCTACCCGCATTGAGATCAAGCCGG
AGGACGTGGAGGAGTTGGAGGgtaagtaaaggaggatatgagcgtgggaa
taagctggagttttttgtgtgcaaccatgtctgtgtatgtgtggcacggt
ggacagtgtggcgtgacagcgctctctcgcgtaactcctccccgcccggc
caccacagcgagggcttcaagaaagccgaagaacagaatctcaaacgtac
tccctctcaaatgtacccaatgctgctgttactataatgcgggtgctgca
gtggcccatcacgggtgtcaataccatccaaactcaccaacatcaccctt
cacaaacccctctcttttccgttcctcactttctttccccttcgctcgtt
ggtcgaacagCCGTCCAACAAAGGCAACGGGAACAAGAACACCACCACCA
ACAACAACAATTTGCCACTGCTGCTGCTGCTCGTGTAGCGGGGGGTGTTG
GTGTTCCTGTTGCAGGAGTGAGCACTCCGTGCGGCCCCTCGGACACTACC
ACTAGTACACCGCAGGGACGCACAGGCGGGGTGGAGGGAGGAGCAAGAGG
AGGGGGAGGAGAGGGAGGAGGGAATGGGGCCTACCATACACCCACAGTGG
CAGAACGGATTGGCTTGAGAAGATGAGGGGGAGCGGGGCTTGAGGAAGGA
GGAAGGAACAAAGGGAGGGAGGGAAAAAGAGTGGGATGTACATGGACGAC
GAAGGGATAAGTTAACAAAGAGGAATGCATCAGAATGCAGGGGACATGTC
CCTCAATGAAAGAGGATAGCGGAGCGATGGTGCTGTGTTCTACAGCTGGA
CTGCTTCAAACCTCC
back to top

protein sequence of NO18G01750.1

>NO18G01750.1-protein ID=NO18G01750.1-protein|Name=NO18G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MLRRPPTRIEIKPEDVEELEAVQQRQREQEHHHQQQQFATAAAARVAGGV
GVPVAGVSTPCGPSDTTTSTPQGRTGGVEGGARGGGGEGGGNGAYHTPTV
AERIGLRR*
back to top
Synonyms
Publications