NO18G01700, NO18G01700 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO18G01700 vs. NCBI_GenBank
Match: CBN74709.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 134.4 bits (337), Expect = 9.400e-28 Identity = 82/208 (39.42%), Postives = 115/208 (55.29%), Query Frame = 0
Query: 215 LSASAFHRPGTFALGGLGLGVFLSLLKNDFGDLFRALGLLLIYLLERQRQVGQAYSALGQLRPMVRLAPRRPFPPVENPWAYVRAS----------PSD-----IEFSMTKTLVAVVFVGALYGYLLASAISLFFLPAWLLALIGGGIGGYTATLRDGRGDMVRCLGMKLVAFFGLIKAVEEELSVWLKLGKVCHISYGHAAKFDERW 408
+S S R +L GL +G+ LS+ + FGDLFRALGL + + R R++ Y L R + + PRRPFPP ENPW Y RA P D EFSM K+L++V F+G GYL+ S FLP ++LAL GGG Y AT ++ RGD+ R LGM+ VAF GL+ + ++++ K V I + A +D ++
Sbjct: 2 ISKSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAKSLLSVAFLGGFAGYLV-SQFPFVFLPTFMLALGGGGFLAYLATTKNARGDLTRLLGMRTVAFLGLVSEINSDVALSAKGKVVGGICFSKAMFWDRKY 208
BLAST of NO18G01700 vs. NCBI_GenBank
Match: XP_002179794.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48780.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 129.4 bits (324), Expect = 3.000e-26 Identity = 75/257 (29.18%), Postives = 130/257 (50.58%), Query Frame = 0
Query: 185 DPVELYCTRFAGKLAVTLAAGVVGSGMGLALSASAFHRPGTFALGGLGLGVFLSLLKNDFGDLFRALGLLLIYLLERQRQVGQAYSALGQLRPMVRLAPRRPFPPVENPWAYVRASPSDIEFSMTKTLVAVVFVGALYGYLLASAISLFFLPAWLLALIGGGIGGYTATLRDGRGDMVRCLGMKLVAFFGLIKAVEEELSVWLKLGKVCHISYGHAAKFDERWKVRENLWKVGGWVSGKLTKEAERVRGDRMEGEGG 442
D + Y + GK + L++G VG +G L S +RP ++ + L+N +G+ +ALG+ LI+ ++R R++ + Y ++ ++ A RR FPP+ENPWAYV D+EF M +++A+ FVG+ G +L +PAW+ AL G G + T R+ +GD+ R +GM++V+ I + EL + K G V D + ++++ L W ++++ A V+ D G
Sbjct: 178 DAIGRYMSTSRGKALLLLSSGTVGGAIGAFLGKSLLNRPFALSIPFFFTFWIAANLRNSYGEFVKALGMTLIFAVQRSRRIRKTYPTFCHVKALIGAAQRREFPPIENPWAYVPLEEGDVEFKMLYSVIAMGFVGSACGG------NLPLIPAWIGALAGAGSFAFWTTARNAQGDLARTIGMRVVSLAQEILQINYELELLSKFGVVSGKVLDKLLILDRKHRIKDRLIAGTSWAYDRISRTAAEVQNDMQSPSRG 428
BLAST of NO18G01700 vs. NCBI_GenBank
Match: EWM23375.1 (hypothetical protein Naga_100472g1 [Nannochloropsis gaditana]) HSP 1 Score: 124.4 bits (311), Expect = 9.700e-25 Identity = 67/117 (57.26%), Postives = 75/117 (64.10%), Query Frame = 0
Query: 185 DPVELYCTRFAGKLAVTLAAGVVGSGMGLALSASAFHRPGTFALGGLGLGVFLSLLKNDFGDLFRALGLLLIYLLERQRQVGQAYSALGQLRPMVRLAPRRPFPPVENPWAYVRASP 302
DPV+LYC R+ G++AVTLAAGV +NDFGDLFRALGLLLIYL+ERQ G AY AL QLRP++RLAPRRPFPPVENPWAYVRASP
Sbjct: 200 DPVDLYCARWQGRMAVTLAAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPVENPWAYVRASP 316
BLAST of NO18G01700 vs. NCBI_GenBank
Match: XP_002286001.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95642.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 115.2 bits (287), Expect = 5.900e-22 Identity = 71/256 (27.73%), Postives = 123/256 (48.05%), Query Frame = 0
Query: 185 DPVELYCTRFAGKLAVTLAAGVVGSGMGLALSASAFHRPGTFALGGLGLGVFLSLLKNDFGDLFRALGLLLIYLLERQRQVGQAYSALGQLRPMVRLAPRRPFPPV---ENPWAYVRASPSDIEFSMTKTLVAVVFVGALYGYLLASAISLFFLPAWLLALIGGGIGGYTATLRDGRGDMVRCLGMKLVAFFGLIKAVEEELSVWLKLGKVCHISYGHAAKFDERWKVRENLWKVGGWVSGKLTKEAERVRGDRME 438
D V +Y + G V + VVG+ +G + S + P + L L+ND+G+L RALGL + +R V + Y L L+ M+R PR+PFPPV ++PW Y D EF MT L+A+ VG+ G ++ LPAW+ ++G + + + RGD+ R +GM++V L+ + EL + K V + + D + ++++ + + W + K++ A ++ D +
Sbjct: 321 DAVTMYMSTRRGAFKVRFGSVVVGATLGAFIGKSLMNDPFVISFVTASLLFIAGFLRNDYGELSRALGLAFLLTCQRTSSVRKEYPTLVHLKAMIRQGPRKPFPPVDEGDSPWKYEPIYEDDPEFKMTYALLAMAMVGSFCGG------NVPLLPAWMGGIVGAVVFASLTSGANARGDLGRTMGMRVVGLLQLVLTINSELRILGKAATVGGLIFDKIMIMDRKHRIKDKIVAIFKWGADKVSNTAADIQADMQD 570
BLAST of NO18G01700 vs. NCBI_GenBank
Match: EJK49009.1 (hypothetical protein THAOC_32153 [Thalassiosira oceanica]) HSP 1 Score: 103.6 bits (257), Expect = 1.800e-18 Identity = 71/258 (27.52%), Postives = 125/258 (48.45%), Query Frame = 0
Query: 185 DPVELYCTRFAGKLAVTLAAGVVGSGMGLALSASAFHRPGTFALGGLGLGVFLSLLKNDFGDLFRALGLLLIYLLERQRQVGQAYSALGQLRPMVRLAPRRPFPPV---ENPWAYVRASPSDIEFSMTKTLVAVVFVGALYGYLLASAISLFFLPAWLLALIGGGIGGYTATLRDGRGDMVRCLGMKLVAFFGLIKAVEEELSVWLKLGKVCHISYGHAAKFDERWKVRENLWKVGGWVSGKLTKEAERVRGDRMEGE 440
D V Y + G + V VVG+ +G + S + P A+ L + S L+ND+G+L RALGL + L R V + Y + ++ M+R PR+PFPPV ++PW Y D EF MT +L+ + FVG+ G ++ +PAW+ ++ G + + RGD+ R +GM++V + + ELS+ K V + + D + ++++ L + K++ ++V+ D + +
Sbjct: 277 DAVTTYMSGKRGAIKVRFGCVVVGAALGGFIGKSLLNDPKVAAVAFSLLFLVTSFLRNDYGELSRALGLAFVMTLNRTSSVRREYPTMPHIKAMLRQKPRKPFPPVDEGDSPWRYEPRYRDDPEFKMTYSLLTMGFVGSFCGG------NVPIIPAWMGSIAGALMFAAMTMGSNARGDLGRSMGMRMVGLGKVALEINSELSILRKGATVGGLIFDKIMVMDRKHRIKDKLVSIFNRGYEKVSSTFQQVQTDMQDDQ 528
BLAST of NO18G01700 vs. NCBI_GenBank
Match: GAX12927.1 (hypothetical protein FisN_22Hu260 [Fistulifera solaris]) HSP 1 Score: 92.4 bits (228), Expect = 4.100e-15 Identity = 60/196 (30.61%), Postives = 98/196 (50.00%), Query Frame = 0
Query: 218 SAFHRPGTFALGGLGLGVFLSLLKNDFGDLFRALGLLLIYLLERQRQVGQAYSALGQLRPMVRLAPRRPFPPVENPWAYVRASPSDIEFSMTKTLVAVVFVGALYGYLLASAISLFFLPAWLLALIGGGIGGYTATLRDGRGDMVRCLGMKLVAFFGLIKAVEEELSVWLKLGKVCHISYGHAAKFDERWKVRENL 414
SAF G + G L + LL+ FGD R+L L +++ ++R R+V + Y ++ +R PRRP+PP NPW Y + SP+ F+M TL+++ VG+ G ++ +P WL L+G G Y AT GD+VR GM++V + V EL + +L + D + ++R+ +
Sbjct: 151 SAFLLHGWWHPGALAFTIGY-LLRGAFGDCVRSLALAMLWTMQRSRRVWKEYPTWRHVKACLRAGPRRPYPPTSNPWNY-QPSPNASSFNMMYTLISIAIVGSTVGG------NVPLVPKWLGGLLGAGFFAYLATQPSALGDLVRTAGMRVVGLLQELWEVTMELRLRQQLTVFAVRLFDRLMFLDRQHRIRDRV 338 The following BLAST results are available for this feature:
BLAST of NO18G01700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO18G01700 ID=NO18G01700|Name=NO18G01700|organism=Nannochloropsis oceanica|type=gene|length=4218bpback to top protein sequence of NO18G01700.1 >NO18G01700.1-protein ID=NO18G01700.1-protein|Name=NO18G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bpback to top Synonyms
Publications
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