NO18G01590, NO18G01590 (gene) Nannochloropsis oceanica

Overview
NameNO18G01590
Unique NameNO18G01590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length258
Alignment locationchr18:514658..514915 -

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Properties
Property NameValue
DescriptionDynamin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:514658..514915 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
Homology
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BLAST of NO18G01590 vs. NCBI_GenBank
Match: EWM23366.1 (dynamin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 140.2 bits (352), Expect = 3.000e-30
Identity = 71/85 (83.53%), Postives = 79/85 (92.94%), Query Frame = 0 
Query:    1 MRELALDAYVRLLLRRVFYAIPMNIRNVILNEFRRDLVSMVAEKYNDETKLRTVMSEELWKIQQRQQRVERKASLTDLMKKLDML 86
            MREL LDAYVRL+LRRVFYA+PMNIRNV+LNEFR +LVSMVAEKYNDE KLRTVMSEELW++QQRQQR ERK SLTDL+ KLD+L
Sbjct:  673 MRELTLDAYVRLMLRRVFYAVPMNIRNVMLNEFRHELVSMVAEKYNDEAKLRTVMSEELWRVQQRQQRTERKESLTDLLHKLDLL 757
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BLAST of NO18G01590 vs. NCBI_GenBank
Match: EWM23365.1 (dynamin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 96.3 bits (238), Expect = 5.000e-17
Identity = 48/80 (60.00%), Postives = 64/80 (80.00%), Query Frame = 0 
Query:    6 LDAYVRLLLRRVFYAIPMNIRNVILNEFRRDLVSMVAEKYNDETKLRTVMSEELWKIQQRQQRVERKASLTDLMKKLDML 86
            L  YV LLLRR+FYA+PMN RNV++NEFR D++S+V  KYN+ETKLR +MSEELW    RQQ+  R+++L ++M KLD+L
Sbjct:  662 LHQYVHLLLRRMFYAVPMNTRNVMINEFRDDVLSVVTGKYNEETKLRALMSEELWAGHSRQQQAVRRSALEEVMNKLDLL 741
The following BLAST results are available for this feature:
BLAST of NO18G01590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23366.13.000e-3083.53dynamin-like protein [Nannochloropsis gaditana][more]
EWM23365.15.000e-1760.00dynamin-like protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR046ncniR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01590.1NO18G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01590.1NO18G01590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01590 ID=NO18G01590|Name=NO18G01590|organism=Nannochloropsis oceanica|type=gene|length=258bp
ATGCGGGAGTTGGCGTTGGATGCCTATGTGCGCTTGTTGTTGCGACGGGT
GTTTTACGCAATTCCTATGAACATTCGAAACGTGATTTTGAATGAGTTTA
GGCGTGATTTGGTGTCCATGGTAGCGGAGAAATATAACGATGAAACGAAG
CTTCGTACGGTCATGTCGGAGGAGTTGTGGAAGATCCAACAGCGACAGCA
AAGGGTGGAACGAAAGGCGTCTTTGACAGATTTGATGAAGAAGTTGGACA
TGTTGTAA
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protein sequence of NO18G01590.1

>NO18G01590.1-protein ID=NO18G01590.1-protein|Name=NO18G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MRELALDAYVRLLLRRVFYAIPMNIRNVILNEFRRDLVSMVAEKYNDETK
LRTVMSEELWKIQQRQQRVERKASLTDLMKKLDML*
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Synonyms
Publications