NO18G01540, NO18G01540 (gene) Nannochloropsis oceanica

Overview
NameNO18G01540
Unique NameNO18G01540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1425
Alignment locationchr18:499789..501213 +

Link to JBrowse

Properties
Property NameValue
DescriptionTriacylglycerol lipase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:499789..501213 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G01540 vs. NCBI_GenBank
Match: EWM23354.1 (triacylglycerol lipase [Nannochloropsis gaditana])

HSP 1 Score: 165.2 bits (417), Expect = 4.800e-37
Identity = 145/419 (34.61%), Postives = 190/419 (45.35%), Query Frame = 0 
Query:    8 RRRQMRSARVVLWLLLLGAVGAAAITWRRQAFALPVTS--ASWTTRWHKRQXXXXXXXXXXXXXXXXXPWSIYMSIAPKDPRREQSFPGGGMEERSSFLGGGGEGLSFSPFLTGEHRSFLQSHIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTTSFYQPIFPIEDILLSNTSSNVSTPAAIARASASTSQPFSLSKAVLMGPFAFEAYNDPPRSAGHWQLGKDKNEVAILHDGFLQEEYGGLLRVSIMGLTETRAEGHALLVKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVMIDAAVSVEMGEEYVATRVLKLQRRSMVEGTEEGGEGRRHAYVPVPCA-----EGKGAMFEVFVKEPWGHLLEEGEKRGQSSSSRGSGGERKKELRITIKGKDDLPLGVASVDLSVLL 420
            R RQM S R++LW+LLL AVG+ A+ W R AFA  + S  +SW +RWHKR+                      MSIAP  P RE S PG G         GG   L F P    +  +FL+ H                                 ++ +                                +PFSLSKAVLMGPFAFEAY DPPR++G+WQ G+DKNEVAILH+GFL+E Y G LRV +  +TETRAE  A+ +KA                                  M+  +V++EMGEE+V +++++L+R   VE  EEGGE   + YVPV  A      G G    V   E  G        R Q       GGE    LR +++GK++  LGVA VD++ LL
Sbjct:    3 RTRQMHSPRLLLWVLLLAAVGSGAVGWGRLAFAPSLASRPSSWHSRWHKRRLGPVFWDSGASISPKS---RTCMSIAPHGP-REASRPGVGSP-------GGRSPLDFGPPFQ-KDGNFLREH--------------------SPRLQQDTRQVADSATHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPFSLSKAVLMGPFAFEAYTDPPRTSGYWQSGRDKNEVAILHEGFLREAYAGKLRVRVKAVTETRAEAQAVFLKAAGARTEGQGPSGKEGARAGGSVGNPRAE------MLAVSVAMEMGEEFVGSQMVRLER---VE-REEGGES--NVYVPVRGALAGRETGLGGSVGVAGLEDAGLEAWVPAPRAQMQ----EGGETL--LRFSLRGKEECSLGVAEVDVADLL 371
The following BLAST results are available for this feature:
BLAST of NO18G01540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23354.14.800e-3734.61triacylglycerol lipase [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004009NSK004009Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01540.1NO18G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633673gene_9083Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g25gene7090Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01540.1NO18G01540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01540 ID=NO18G01540|Name=NO18G01540|organism=Nannochloropsis oceanica|type=gene|length=1425bp
ATGACACCCCATCAAGGCAACAGAAGGAGGCAGATGCGCTCTGCAAGGGT
AGTGCTTTGGCTGCTCCTGCTAGGGGCTGTGGGTGCAGCCGCGATAACCT
GGAGGAGACAGGCCTTCGCCCTCCCCGTTACGAGTGCCTCTTGGACGACA
CGCTGGCACAAGCGACAGAAAGGGTCATCACTTAGCAGCAGCAGCAGTTC
CTCGAGCACACACACAACCCCTTGGAGCATATACATGTCCATAGCCCCCA
AGGACCCACGACGGGAGCAATCTTTCCCAGGCGGTGGGATGGAGGAGAGA
AGCAGCTTCCTTGGCGGCGGGGGCGAAGGGTTGTCATTCTCCCCCTTCTT
GACAGGGGAGCATAGATCCTTCCTTCAGAGTCATATCGAGAAGCGACTAC
AGCAGCAGTCACAACAAGTGCAGCAGCAGGCACAACAAGAGCAGCAGCAG
CTGCAGCAGAAGCAGCAGCAGGAAGCCAACACTACATCCTTCTACCAACC
CATCTTCCCTATAGAGGACATTCTTCTATCAAACACCTCCTCGAATGTGT
CGACTCCGGCAGCTATAGCAAGAGCATCAGCTAGCACATCGCAACCCTTC
TCCTTGAGTAAAGCTGTTCTCATGGGTCCGTTTGCTTTTGAAGCGTACAA
TGACCCTCCTCGTTCCGCGGGGCACTGGCAACTGGGGAAAGACAAGAACG
AAGTCGCTATTTTACACGATGGTTTCTTGCAGGAGGAGTATGGTGGGTTA
CTGCGTGTCAGCATAATGGGCCTGACAGAAACGAGGGCGGAGGGACATGC
GCTGTTAGTCAAGGCGGCAAGAGGGAAGAAGGGTGGGACCACCAGCAGAA
TCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGTAGTAGTATTGGTGGTTGT
AGCAGCAGCGGGAAGGTGATGATTGATGCTGCAGTGTCGGTGGAGATGGG
GGAAGAGTATGTGGCCACGCGGGTGCTAAAATTGCAGAGACGTTCAATGG
TGGAGGGAACAGAGGAAGGAGGGGAAGGACGGAGGCATGCGTACGTCCCA
GTTCCTTGTGCAGAAGGAAAAGGTGCCATGTTTGAGGTATTCGTAAAGGA
GCCCTGGGGGCACCTGCTGGAGGAAGGGGAGAAGAGAGGCCAAAGCAGCA
GCAGCAGAGGCAGTGGAGGAGAAAGGAAAAAGGAGCTGCGCATCACGATC
AAGGGCAAAGATGATCTTCCTCTTGGCGTGGCGTCTGTGGATCTTTCTGT
CCTCCTATCCCAGGTGCGGAAGAGCAGCAGCAGCAGCAGCAAGGGTATCA
TCACAACGACATGGCGGAGGGATCTGTCTCTAACGACCTTGATGACTGGT
GGTGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAACAAGAAGAGGGGGGGG
CAGCATCTACCAGGACCCTTTGTGA
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protein sequence of NO18G01540.1

>NO18G01540.1-protein ID=NO18G01540.1-protein|Name=NO18G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MTPHQGNRRRQMRSARVVLWLLLLGAVGAAAITWRRQAFALPVTSASWTT
RWHKRQKGSSLSSSSSSSSTHTTPWSIYMSIAPKDPRREQSFPGGGMEER
SSFLGGGGEGLSFSPFLTGEHRSFLQSHIEKRLQQQSQQVQQQAQQEQQQ
LQQKQQQEANTTSFYQPIFPIEDILLSNTSSNVSTPAAIARASASTSQPF
SLSKAVLMGPFAFEAYNDPPRSAGHWQLGKDKNEVAILHDGFLQEEYGGL
LRVSIMGLTETRAEGHALLVKAARGKKGGTTSRISSSSSSSSSSSSIGGC
SSSGKVMIDAAVSVEMGEEYVATRVLKLQRRSMVEGTEEGGEGRRHAYVP
VPCAEGKGAMFEVFVKEPWGHLLEEGEKRGQSSSSRGSGGERKKELRITI
KGKDDLPLGVASVDLSVLLSQVRKSSSSSSKGIITTTWRRDLSLTTLMTG
GGGGGGGGGGGTRRGGGSIYQDPL*
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Synonyms
Publications