NO18G01500, NO18G01500 (gene) Nannochloropsis oceanica

Overview
NameNO18G01500
Unique NameNO18G01500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2916
Alignment locationchr18:490748..493663 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:490748..493663 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO18G01500 vs. NCBI_GenBank
Match: EWM23352.1 (hypothetical protein Naga_100057g22 [Nannochloropsis gaditana])

HSP 1 Score: 201.4 bits (511), Expect = 3.000e-48
Identity = 112/182 (61.54%), Postives = 140/182 (76.92%), Query Frame = 0 
Query:   51 SKHLDRQTALRSLFGGIALPALVVLSPSIGSGVPSVLAQDSSPAEEALTRVIIVKDSTEQLEDELTNGNSYPDVKALVTSLLRNYQLKSSLDSALALLPSSISPKTKEDAKLHAKTAYENLILILEYFPEDQSGPLANKTLKPEQVTFTIKALQATRKELRDYMGFFDEGLREKLAEGVAST 233
            S  ++R + LR       LPALV+LSP + S     LAQ +SP EEALTRV+IV+DSTEQLE+ELT+G++YPDVKALV SL+RNY+LKSS++SALALLPS     + E+ +  AK+AYENL +ILEYFPED +GP ANKTLKP+Q++FTIKALQATRKEL   +G F   LR +LAE VA+T
Sbjct:   45 SGQVNRCSVLRFWTQAAVLPALVLLSPDLRS-EGRALAQAASPVEEALTRVLIVRDSTEQLEEELTSGDTYPDVKALVNSLIRNYKLKSSMESALALLPSG----STEEGRKFAKSAYENLTIILEYFPEDVAGPTANKTLKPDQLSFTIKALQATRKELDSLLGLFPTELRGRLAENVANT 221
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BLAST of NO18G01500 vs. NCBI_GenBank
Match: CBN80276.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 63.5 bits (153), Expect = 9.700e-7
Identity = 48/132 (36.36%), Postives = 67/132 (50.76%), Query Frame = 0 
Query:   82 GVPSVLAQDSSPAEEALTRVIIVKDSTEQLEDELTNGNSYPDVKALVTSLLRNYQLKSSLDSALALLPSSISPKTKEDAKLHAKTAYENLILILEYFP---EDQSGPLANKTLKPEQVTFTIKALQATRKEL 211
            G  S   + + P  + L  V  V+ ST+QLED LTN  + P +  LV  L++NY+L  SL      + SS     +  A    + A E L    EYFP   +D++G  A K L  E + FT+ AL ATR +L
Sbjct:   62 GAGSSGGKATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPGLTGLVKGLIKNYKLDESLQQGAKYIESS---GDRNAAASAGREALEYLAQTAEYFPVEVDDRTG--ATKKLSSEALEFTVNALIATRAKL 188
The following BLAST results are available for this feature:
BLAST of NO18G01500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23352.13.000e-4861.54hypothetical protein Naga_100057g22 [Nannochlorops... [more]
CBN80276.19.700e-736.36conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004005NSK004005Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01500.1NO18G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608036gene_9079Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g22gene7093Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01500.1NO18G01500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01500 ID=NO18G01500|Name=NO18G01500|organism=Nannochloropsis oceanica|type=gene|length=2916bp
GGAGGAGGGGGCGGTGGTGGCGGTGGTGGCGGGGCCTGTGCGTTGGTGGT
GTGGTGGGTGGGTAGCGCGGAAACTGTTATTATAACGATGGCCCTCTCAC
TTTTCCCTCCACGTCAAGCAAATGCCACCCACTTAAGCTGAATGCAGACC
ACTCTTTCCTGTCGTCTGCCCGTTCCTGGCACTGAAGGGAGGGCATAGAA
TATCTGTTTGTCAGGCTCCCACCCAAGGATCAAGCATCATCATTACCACC
GGCCTCATCCCTCCTCCCCTCCCCTGTCCTCACATACCTGTCCGTGCCAA
GACATGAAGATGCGCGGCTCTATTCCTTGACACGAGCGATGATTATTTCG
CTGCCTGAGTGGGTGCGATGCATGCGATAAAATAGGGCGTGAGACGTGGG
GGCCGGCAATCCGGTGTCCTTCTTTATGATTGCCGTTCTGTTGTCAGTCG
ATCTCCCCATTCTTCCACGCTTGCTTACGCAGGCGTATGTTTAAACGCTC
TAGCCGACGTCTTTTTTCATACCCTCTTTCCCTCCGTTGACAGGAAGCTT
CGGGAGGGAAGGATAAAATGTGCCGTCGCGTACTCGACTTTCTTCTCTTG
GTGCTCGTGGTATTCAGTAGCACCACATATGCCTTTTTCCCCTCGGCAGC
ACTATCCTTCACAACCGCACGCACCCGCTGCTGCGCGACAGCCTCAACGT
CATCGTCGTCCACATTATCAAAGCATCTCGACCGTCAGACTGCCTTGCGT
TCCTTGTTTGGAGGTATAGCGCTCCCTGCTCTTGTCGTGTTGTCCCCAAG
CATTGGTAGTGGCGTGCCTTCTGTCCTTGCCCAAGACTCGTCTCCTGCCG
AGGAGGCTTTGACCCGCGTGATTATTGTAAAGGACTCGACAGAGCAATTG
gtacggacatcttgattatcttatgcttgcatattattgtaaaagtgagc
catgtattttcttctcttcctttacttccgccccccgcctttgcttgggc
ctctttgcttgccctctccaacgtgacccacacgccaaaatgaagccaag
cctgtcttaacaacgcacagatgcaagccgttcaatctcagtctcatggt
cttcaatctcaacttccctcccttcctcttccacgccgccactcaccatt
ccccgcccacagGAAGATGAGCTCACGAACGGCAACAGCTACCCCGACGT
TAAGGCCCTAGTCACCTCCCTCCTCCGGAACTATCAGCTCAAGTCCAGCC
TGGATAGCGCCCTGGCCCTTCTTCCCTCCTCCATTTCTCCCAAGACAAAA
GAAGACGCGAAACTGCACGCGAAAACCGCCTATGAAAATTTGATTCTTAT
TTTAGAATATTTTCCCGAAGATCAAAGTGGGCCCTTGGCGAACAAGACGC
TCAAGCCTGAGCAGGTTACCTTCACCATAAAGGCGTTGCAGGCGACTAGG
AAAGAATTGCGTGATTACATGGGATTCTTTGACGAGGGTCTGAGGGAAAA
GCTGGCGGAGGGGGTGGCGAGCACGTAGGGAGGGAGGCAGACAGGCAGAC
AGGCAGGGAGGGAAGGAGGGGAATTTATAGAACCTGGAATAAAAGACTGT
TAGTTTTATTACTATTTCATTGTCTTCTTTCCTTTGTCATTTCTTTTTTT
TAAAGATGAGGGAGGCAATGAGTGAGTGAGGTAGGCTCGTGATTTTTTTG
AGTGTTTGCGAGAAACGGGTCGCATAAAATGTTTATGTATAATATTTCCT
ATGTCATCTCTTCCCCATTCCTTCCCACTCCTGTCTTCTTCCTTGTAACC
AATACTCCCTCACTCCTGTTACTCCGCTACTGCTGCTGCTCCTGCTGCTG
GACTTCTTTTTGCATCATTCTTCCTCCCCCTGCACTCCCTTTTTCTGGGC
ACGCACGCCTGTTCTTTCGCTTATCATTCTTGCTTTTCTTCACCACCCTT
CATCTTCTCATATTGTTCTATTTTTCCATCTTCTCTTATCGTTTTAATTC
CTCTTCAATACACTTGTTTTTTCTTCTTCCATGTCTTTTTGTTTCTTTTT
TTAGAGGTGGGGAGGATAATCTGCTTTGATTCTCTTGATCATTTTCTTGA
GCCTTGATAACTTCTTCTTATCCCACTTCTTTATAGAGAAGCCGTCATTG
TCGTCATTTTCATCTTCATCCTCGTCATAACTTTGGTTGCGATTATCCAC
AGAGAAGGAGAGGGAATGGGAACACGCGGGAGGAGTACGTATACATCTCT
TTTAACAGGGAGGTTCAATACCCGGCCCCTCGCCTTCTCACGCCCACCAC
GCTGCAGAGATCGCTGCCACTGTGCGCCAGCTAGTGCTGCTTCCCTCCTC
CATCTCATTTCTTCCTTCAAGCAGACTAAACGACCCACCCTCATTCTTAC
CACCCCTCCATCCTCATCCACATTTTTTATATGAACACACCCCTCCTCCC
TCCCTCCCTCCATTCCTCCCTTCCTTCCTGCATCCTTATAGCTTAAATGT
ATTGAAGTCCCTGACCTCATTAACAATCTCCAAGGCCTTCTGCAGCAAAA
CCCGCATCTCCTGAGAATTCTTGCGCCTCATCGCTACGTCCGCCGTTTCT
CGCATGCTCTCCCCGATCAAATCCTCCCGGTACAAATTCGAAACCAACTC
ATTCTGTAAATTATCCTTCGCATGGTTCACCAAGAAATACATTATGGTCT
TAGGCACCAAATCCATGAAATTCTTCCGGACCACATCAAAATAACTCGCC
GTCAAGGCCTTGATAATCTCCGTCTCAATCTTCTCCCGATCATTCGGCCC
ATCACCATACCTCATCACCTCCGGGACCTGCGGCAACTTCACCACCGCCT
CCCTCCCTCCCTCCCTCCCCCCATCTCTCGCTCCTACTCCTCCGAATCGC
CCACTTCCTCCCAACC
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protein sequence of NO18G01500.1

>NO18G01500.1-protein ID=NO18G01500.1-protein|Name=NO18G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MCRRVLDFLLLVLVVFSSTTYAFFPSAALSFTTARTRCCATASTSSSSTL
SKHLDRQTALRSLFGGIALPALVVLSPSIGSGVPSVLAQDSSPAEEALTR
VIIVKDSTEQLEDELTNGNSYPDVKALVTSLLRNYQLKSSLDSALALLPS
SISPKTKEDAKLHAKTAYENLILILEYFPEDQSGPLANKTLKPEQVTFTI
KALQATRKELRDYMGFFDEGLREKLAEGVAST*
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Synonyms
Publications