NO18G01440, NO18G01440 (gene) Nannochloropsis oceanica

Overview
NameNO18G01440
Unique NameNO18G01440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1208
Alignment locationchr18:476995..478202 -

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Properties
Property NameValue
DescriptionProtein tyrosine phosphatase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:476995..478202 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036196Ptyr_pPase_sf
IPR023485Ptyr_pPase_SF
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO18G01440 vs. NCBI_GenBank
Match: EWM23369.1 (protein tyrosine phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 291.6 bits (745), Expect = 1.700e-75
Identity = 138/166 (83.13%), Postives = 149/166 (89.76%), Query Frame = 0
Query:    8 ASITKSVLFVCLGNICRSPSAEAVFKSMVAKKSLASQFHIDSCGTGGGNPGWYQEGGWSYHEGDRADSRMRAAASKRGIDITSLSRALTAEDVDKFDLLVCMDGANKSAVMEAADYWGKTSVAASKIRLMTEYCTINKGARMVPDPYYGGADGFDKVLDLLEDACE 174
            AS  KSVLFVCLGNICRSP+AEAVFKS+V ++  +S  HIDSCGTGGGNPGWYQ+GGWSYHEGD ADSRMRAAASKRGIDITS SR L AED+D FD L+CMDGANKSAVMEAADYWGKT  AA KIRLMTEYCTINKGAR VPDPYYGGADGF+KVLDLL+DAC+
Sbjct:   64 ASAAKSVLFVCLGNICRSPTAEAVFKSVVEREGKSSHIHIDSCGTGGGNPGWYQKGGWSYHEGDMADSRMRAAASKRGIDITSRSRPLKAEDIDFFDFLICMDGANKSAVMEAADYWGKTQTAAKKIRLMTEYCTINKGARTVPDPYYGGADGFEKVLDLLQDACD 229          
BLAST of NO18G01440 vs. NCBI_GenBank
Match: CBN74838.1 (Protein tyrosine phosphatase [Ectocarpus siliculosus])

HSP 1 Score: 215.3 bits (547), Expect = 1.500e-52
Identity = 102/163 (62.58%), Postives = 123/163 (75.46%), Query Frame = 0
Query:   14 VLFVCLGNICRSPSAEAVFKSMVAKKSLASQFHIDSCGTGGGNPGWYQEGGWSYHEGDRADSRMRAAASKRGIDITSLSRALTAEDVDKFDLLVCMDGANKSAVMEAADYWGKTSVAASKIRLMTEYCTINKGARMVPDPYYGGADGFDKVLDLLEDACEGLL 177
            VLFVCLGNICRSP+AEAVFK + +K   A +F IDSCGTGGGNP WY+EGG SYH GD  D+RM AAA+KRG+ ++  SR LT  D DKFDL+V MD AN  A+  AA++WGK+  A SK+R MT YC  +   + VPDPYYGG  GF+ VLDLL+DAC+GLL
Sbjct:   82 VLFVCLGNICRSPTAEAVFKQVTSKAGDADKFEIDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAAAKRGVMLSGASRPLTPGDFDKFDLVVGMDAANTKAMSTAAEHWGKSQEAISKLRTMTSYCRSSGDVKSVPDPYYGGPQGFETVLDLLDDACQGLL 244          
BLAST of NO18G01440 vs. NCBI_GenBank
Match: XP_009517773.1 (hypothetical protein PHYSODRAFT_471431 [Phytophthora sojae] >EGZ30498.1 hypothetical protein PHYSODRAFT_471431 [Phytophthora sojae])

HSP 1 Score: 210.3 bits (534), Expect = 4.900e-51
Identity = 106/168 (63.10%), Postives = 123/168 (73.21%), Query Frame = 0
Query:   13 SVLFVCLGNICRSPSAEAVFKSMVAKK--SLASQFHIDSCGTGGGNPGWYQEGGWSYHEGDRADSRMRAAASKRGIDITSLSRALTAEDVDKFDLLVCMDGANKSAVMEAADYWGKT---SVAASKIRLMTEYCTINKGARMVPDPYYGGADGFDKVLDLLEDACEGL 176
            SVLFVCLGNICRSP+ EAV K +VAKK  + AS FHIDSCGTGGGNP WY  GGWSYHEGD ADSRM   A KRG  +TS SR L  +D+D+FD ++CM+  NK+AV+EAA+ WG      +A  KI +MT YC   K A  VPDP+Y G  GFD VLDLLEDAC+GL
Sbjct:    3 SVLFVCLGNICRSPAGEAVLKGIVAKKAGADASSFHIDSCGTGGGNPNWYGAGGWSYHEGDAADSRMTKEAKKRGYAMTSRSRPLNKQDIDEFDYIICMEDKNKTAVLEAAEAWGGAPCRDLAKQKISMMTNYCKTFKDATRVPDPWYEG--GFDHVLDLLEDACDGL 168          
BLAST of NO18G01440 vs. NCBI_GenBank
Match: GAX76434.1 (hypothetical protein CEUSTIGMA_g3879.t1 [Chlamydomonas eustigma])

HSP 1 Score: 210.3 bits (534), Expect = 4.900e-51
Identity = 102/174 (58.62%), Postives = 124/174 (71.26%), Query Frame = 0
Query:   14 VLFVCLGNICRSPSAEAVFKSMVAKKSLASQFHIDSCGTGGGNPGWYQEGGWSYHEGDRADSRMRAAASKRGIDITSLSRALTAEDVDKFDLLVCMDGANKSAVMEAADYW--------GKTSVAASKIRLMTEYCTINKGARMVPDPYYGGADGFDKVLDLLEDACEGLLASM 180
            V+FVCLGNICRSP+AEAVF+++V ++ ++  F IDSCGTGGGNP WY  GGWSYHEGD  D RM +AA KRGI +TS SR LT  DV +FDL++ MD  N+ AV EA  YW         +  V  SK  LMT+YC   KG   VPDPYYGG +GF++VLDLL DACEGLL ++
Sbjct:   86 VIFVCLGNICRSPTAEAVFRAVVERRGVSHLFDIDSCGTGGGNPDWYCRGGWSYHEGDEPDRRMTSAAQKRGIVLTSRSRPLTPMDVTRFDLIIGMDAKNQYAVKEATSYWLSEGMIESSEAEVLRSKNSLMTDYCRTYKGVTEVPDPYYGGPEGFERVLDLLYDACEGLLDTL 259          
BLAST of NO18G01440 vs. NCBI_GenBank
Match: OQR94018.1 (hypothetical protein THRCLA_08273 [Thraustotheca clavata])

HSP 1 Score: 209.1 bits (531), Expect = 1.100e-50
Identity = 100/168 (59.52%), Postives = 124/168 (73.81%), Query Frame = 0
Query:   14 VLFVCLGNICRSPSAEAVFKSMVAKKSLASQFHIDSCGTGGGNPGWYQEGGWSYHEGDRADSRMRAAASKRGIDITSLSRALTAEDVDKFDLLVCMDGANKSAVMEAADYWGK--TSVAASKIRLMTEYCTINKGARMVPDPYYGGADGFDKVLDLLEDACEGLLASM 180
            VLFVCLGNICRSP+AE VFK++VAK + ++++ IDSCGTGGG  GWY+  GWSYHEGD ADSRM+  A KRG  +TS SR L  ED+ +FD ++CMD  N  AV+EAA +WG     +A +K+  M +YC +NKGA  VPDP+Y G  GFD VLDLLEDACEGL   +
Sbjct:    5 VLFVCLGNICRSPAAEGVFKAVVAKDNASAKYDIDSCGTGGGASGWYKPNGWSYHEGDSADSRMKKEAKKRGYHLTSKSRPLNPEDLHRFDHIICMDNNNVQAVLEAARFWGAEYEQLAKAKVSTMCQYCIVNKGATRVPDPWYEG--GFDTVLDLLEDACEGLYTQL 170          
BLAST of NO18G01440 vs. NCBI_GenBank
Match: PNW73456.1 (hypothetical protein CHLRE_14g632767v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 207.6 bits (527), Expect = 3.200e-50
Identity = 104/174 (59.77%), Postives = 125/174 (71.84%), Query Frame = 0
Query:   14 VLFVCLGNICRSPSAEAVFKSMVAKKSLASQFHIDSCGTGGGNPGWYQEGGWSYHEGDRADSRMRAAASKRGIDITSLSRALTAEDVDKFDLLVCMDGANKSAVMEAADYW-----GKTSVA---ASKIRLMTEYCTINKGARMVPDPYYGGADGFDKVLDLLEDACEGLLASM 180
            VLFVCLGNICRSP+AEAVF+++V +  LA  F IDSCGTGGGNP W+ EGGWSYHEGD ADSRM   A KRG+ +TS SR L   D  +FD +V MD  N  A+  AADYW     G  +V    A+++ LMT YC+  KG   VPDPYYGG  GF++VLDLL+DACEGLLA++
Sbjct:  100 VLFVCLGNICRSPTAEAVFRTVVQRAGLAEAFDIDSCGTGGGNPDWFTEGGWSYHEGDPADSRMTLTARKRGVQLTSRSRPLAPLDFGRFDYIVGMDAKNIRAIRTAADYWRVRPMGGDAVPADYAARLSLMTAYCSRFKGEPEVPDPYYGGPAGFERVLDLLDDACEGLLAAI 273          
BLAST of NO18G01440 vs. NCBI_GenBank
Match: OQS01602.1 (hypothetical protein ACHHYP_00582 [Achlya hypogyna])

HSP 1 Score: 206.5 bits (524), Expect = 7.100e-50
Identity = 98/172 (56.98%), Postives = 126/172 (73.26%), Query Frame = 0
Query:   10 ITKSVLFVCLGNICRSPSAEAVFKSMVAKKSLASQFHIDSCGTGGGNPGWYQEGGWSYHEGDRADSRMRAAASKRGIDITSLSRALTAEDVDKFDLLVCMDGANKSAVMEAADYWGK--TSVAASKIRLMTEYCTINKGARMVPDPYYGGADGFDKVLDLLEDACEGLLASM 180
            +T  VLFVCLGNICRSP+AE VFK+MVA+    +++ IDSCGTGGG+ GWY+  G+SYHEG+ +DSRM+  A KRG  +TS +R LT +D+ +FD ++CMD  N  AVMEAA +WG    ++A +K+  M EYC +NKG   VPDP+Y G  GFD VLDLLEDACEGL   +
Sbjct:    1 MTTGVLFVCLGNICRSPAAEGVFKAMVARDGATAKYDIDSCGTGGGSSGWYKPNGFSYHEGENSDSRMKKEAKKRGYHLTSKARPLTRDDLHRFDHVICMDSNNVRAVMEAATFWGPEFAALAKAKVSTMCEYCIVNKGVTKVPDPWYEG--GFDTVLDLLEDACEGLYTKL 170          
BLAST of NO18G01440 vs. NCBI_GenBank
Match: POM77652.1 (Phosphotyrosine protein phosphatase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 206.5 bits (524), Expect = 7.100e-50
Identity = 102/167 (61.08%), Postives = 123/167 (73.65%), Query Frame = 0
Query:   13 SVLFVCLGNICRSPSAEAVFKSMVAKKSL-ASQFHIDSCGTGGGNPGWYQEGGWSYHEGDRADSRMRAAASKRGIDITSLSRALTAEDVDKFDLLVCMDGANKSAVMEAADYWGKTS---VAASKIRLMTEYCTINKGARMVPDPYYGGADGFDKVLDLLEDACEGL 176
            SVLFVCLGNICRSP+ EAV K +V+K +  A+ F+IDSCGTGGGNP WY  GGWSYHEGD ADSRM   A KRG  +TS SR L  +D+D+FD ++CM+  NK+AV+EAA+ WG  S   +A  KI +MT+YC   KG   VPDP+Y G  GFD VLDLLED C+GL
Sbjct:    3 SVLFVCLGNICRSPAGEAVLKGIVSKNATDATSFYIDSCGTGGGNPNWYGAGGWSYHEGDAADSRMTKEAKKRGYVMTSRSRPLNQKDIDEFDYIICMEDKNKAAVLEAAEAWGGASCRDLAKQKISMMTDYCKTFKGVTRVPDPWYEG--GFDHVLDLLEDTCDGL 167          
BLAST of NO18G01440 vs. NCBI_GenBank
Match: POM77827.1 (Phosphotyrosine protein phosphatase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 206.5 bits (524), Expect = 7.100e-50
Identity = 103/167 (61.68%), Postives = 124/167 (74.25%), Query Frame = 0
Query:   13 SVLFVCLGNICRSPSAEAVFKSMVAKKSL-ASQFHIDSCGTGGGNPGWYQEGGWSYHEGDRADSRMRAAASKRGIDITSLSRALTAEDVDKFDLLVCMDGANKSAVMEAADYWGKTS---VAASKIRLMTEYCTINKGARMVPDPYYGGADGFDKVLDLLEDACEGL 176
            SVLFVCLGNICRSP+ EAV K +V+K +  A+ F+IDSCGTGGGNP WY  GGWSYHEGD ADSRM   A KRG  +TS SR L  +D+D+FD ++CM+  NK+AV+EAA+ WG  S   +A  KI +MT+YC   K A  VPDP+Y G  GFD VLDLLEDAC+GL
Sbjct:    3 SVLFVCLGNICRSPAGEAVLKGIVSKNATDATSFYIDSCGTGGGNPDWYGAGGWSYHEGDAADSRMTKEAKKRGYVMTSRSRPLNQKDIDEFDYIICMEDKNKAAVLEAAEAWGGASCRDLAKQKISMMTDYCKTFKDATRVPDPWYEG--GFDHVLDLLEDACDGL 167          
BLAST of NO18G01440 vs. NCBI_GenBank
Match: XP_008896922.1 (hypothetical protein PPTG_05177 [Phytophthora parasitica INRA-310] >ETI34400.1 hypothetical protein F443_19064 [Phytophthora parasitica P1569] >ETN17355.1 hypothetical protein PPTG_05177 [Phytophthora parasitica INRA-310] >ETP32436.1 hypothetical protein F442_18845 [Phytophthora parasitica P10297])

HSP 1 Score: 205.7 bits (522), Expect = 1.200e-49
Identity = 103/167 (61.68%), Postives = 122/167 (73.05%), Query Frame = 0
Query:   14 VLFVCLGNICRSPSAEAVFKSMVAKK--SLASQFHIDSCGTGGGNPGWYQEGGWSYHEGDRADSRMRAAASKRGIDITSLSRALTAEDVDKFDLLVCMDGANKSAVMEAADYWGKT---SVAASKIRLMTEYCTINKGARMVPDPYYGGADGFDKVLDLLEDACEGL 176
            VLFVCLGNICRSP+ EAV K +VAKK  + A+ FHIDSCGTGGGNP WY  GGWSYHEG+ ADSRM   A KRG  +TS SR L  +D+D+FD ++CM+  NK AV+EAA+ WG      +A  KI +MT+YC   K A  VPDP+Y G  GFD VLDLLEDAC+GL
Sbjct:   23 VLFVCLGNICRSPAGEAVLKGIVAKKAGADAASFHIDSCGTGGGNPNWYGAGGWSYHEGEAADSRMTKEAKKRGYIMTSRSRPLNKQDIDEFDYIICMEDKNKEAVLEAAEAWGGVPCRDLADQKISMMTDYCKTIKDATRVPDPWYEG--GFDHVLDLLEDACDGL 187          
The following BLAST results are available for this feature:
BLAST of NO18G01440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23369.11.700e-7583.13protein tyrosine phosphatase [Nannochloropsis gadi... [more]
CBN74838.11.500e-5262.58Protein tyrosine phosphatase [Ectocarpus siliculos... [more]
XP_009517773.14.900e-5163.10hypothetical protein PHYSODRAFT_471431 [Phytophtho... [more]
GAX76434.14.900e-5158.62hypothetical protein CEUSTIGMA_g3879.t1 [Chlamydom... [more]
OQR94018.11.100e-5059.52hypothetical protein THRCLA_08273 [Thraustotheca c... [more]
PNW73456.13.200e-5059.77hypothetical protein CHLRE_14g632767v5 [Chlamydomo... [more]
OQS01602.17.100e-5056.98hypothetical protein ACHHYP_00582 [Achlya hypogyna... [more]
POM77652.17.100e-5061.08Phosphotyrosine protein phosphatase [Phytophthora ... [more]
POM77827.17.100e-5061.68Phosphotyrosine protein phosphatase [Phytophthora ... [more]
XP_008896922.11.200e-4961.68hypothetical protein PPTG_05177 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004000NSK004000Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01440.1NO18G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608018gene_9074Nannochloropsis oceanica (N. oceanica CCMP1779)gene
PTPgene7099Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01440.1NO18G01440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01440 ID=NO18G01440|Name=NO18G01440|organism=Nannochloropsis oceanica|type=gene|length=1208bp
ATGTCGTCCTCTGCGAACGGCGCGTCTATCACCAAATCCGTCTTATTTGT
GTGCCTGGGAAACATATGTCGCAGCCCTTCGgtgagtgaataagtcagac
acgcggctcagccaagaccccccgcatcgtttccaccttcatcctcacca
cccctctcacaccgaccggcgcagGCTGAGGCCGTATTCAAGAGCATGGT
AGCGAAAAAAAGTCTAGgtaagcaacctgaatcctatccttcttttctta
tccccgtcttttttgtctcccacgcgcacctttccacaaagcctcctcat
tccaattttgctgccgccagccacctttaacatgtatcctcttgttcaac
cacaccaactcgcttccgtctttcctttctgtgcgttcattctgccagaa
atgccagttccaacacactcacacacaattgaaagccaccagctccccca
ttcacactctgatgctcattcattctctcactcactctgcggttacatgt
cccaaagCCTCACAATTTCACATTGACAGCTGCGGCACGGGCGGAGGCAA
CCCGGGCTGGTATCAAGAGGGTGGCTGGAGCTATCATGAAGGCGATAGGG
CCGACAGCCGCATGAGAGCCGCCGCCTCCAAACGCGGCATTGACATTACT
TCGTTATCCCGCGCTCTGACAGCCGAGGATGTCGACAAATTCGATTTGTT
GGTCTGCATGGATGGAGCCAACAAGAGCGCAGTGATGGAGGCAGCTGACT
ATTGGGGAAAAACCTCTGTAGCAGCAAGCAAAATCAGGCTCATGACTGAG
TACTGCACGATCAACAAGGGAGCAAGgtaaggaagaggaggaggagaagg
aggaggagaaagagaggggtggggggcgggggaaggaggagagatggtag
tcgtagtagtagtggtggtattgaaattaaggagagcaattgtgctgctg
ctggcagggtgcagcggagagtgcatgcacacatccatttccgcaagtga
gtcccatgcttcaatttcgaggtctgtttctcgctcaccaaggccggttt
tcactctttttccattaaaatttcctaacttacacgtatatgccctttca
atcaaaaccagGATGGTGCCAGACCCTTACTACGGCGGTGCAGACGGCTT
CGATAAGGTGCTGGACTTACTCGAAGATGCCTGTGAGGGCCTATTGGCAA
GCATGTAG
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protein sequence of NO18G01440.1

>NO18G01440.1-protein ID=NO18G01440.1-protein|Name=NO18G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MSSSANGASITKSVLFVCLGNICRSPSAEAVFKSMVAKKSLASQFHIDSC
GTGGGNPGWYQEGGWSYHEGDRADSRMRAAASKRGIDITSLSRALTAEDV
DKFDLLVCMDGANKSAVMEAADYWGKTSVAASKIRLMTEYCTINKGARMV
PDPYYGGADGFDKVLDLLEDACEGLLASM*
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Synonyms
Publications