NO18G01430, NO18G01430 (gene) Nannochloropsis oceanica

Overview
NameNO18G01430
Unique NameNO18G01430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length621
Alignment locationchr18:476145..476765 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:476145..476765 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO18G01430 vs. NCBI_GenBank
Match: GAY03579.1 (Hypothetical protein PINS_011403 [Pythium insidiosum])

HSP 1 Score: 68.6 bits (166), Expect = 2.700e-8
Identity = 66/217 (30.41%), Postives = 99/217 (45.62%), Query Frame = 0
Query:    1 MAFFGLTALGPQDPLAVSTDAVQHLHIFTDTDWKEAY------GRQLY-ENNQEHNRKKRSKIGCVATAEALPLKCVFATMEDVYH-----GSVPPADQRLFERWLRP-PSQEATITLTAFLTAVQGACTEAE--TMIASRRFDAGPSCESRSWQEYFSNLRKCKASVRAPSQKQTVPLTAQQQIDWETPAFVAASERKAIRSSEETKYASEMIKAG 203
            MAFFGLT LG Q P  ++ +    L  F+  DW++A+      G  L+ E+++E +  K+       T E LP       ++ +YH      +VP +   L    L    + +  ITL AF+   +  C  AE     ASR         SR     F+  R      R P +K  +P+T  Q + W  P  +  + R+  +S EET+YAS M+KAG
Sbjct:    1 MAFFGLTGLGSQSPFELTKET--PLCAFSPQDWQDAFMQTVRPGFTLHSESDEEVDAAKQELTRASITYEQLP-----TLLQHLYHCPKGVNNVPESSTALVLEVLADYAATQERITLGAFMQHAERICRHAEEDEAKASRYAYMKDGIRSRE----FTTTR----MARDPREKALLPMTDTQTLGWNKPTII--TTRRPTKSCEETRYASAMVKAG 200          
BLAST of NO18G01430 vs. NCBI_GenBank
Match: GAY03580.1 (Hypothetical protein PINS_011402 [Pythium insidiosum])

HSP 1 Score: 66.2 bits (160), Expect = 1.300e-7
Identity = 61/222 (27.48%), Postives = 99/222 (44.59%), Query Frame = 0
Query:    1 MAFFGLTALGPQDPLAVSTDAVQHLHIFTDTDWKEAY------GRQLY-ENNQEHNRKKRSKIGCVATAEALPLKCVFATMEDVYH-----GSVPPADQRLFERWLRP-PSQEATITLTAFLTAVQGAC-------TEAETMIASRRFDAGPSCESRSWQEYFSNLRKCKASVRAPSQKQTVPLTAQQQIDWETPAFVAASERKAIRSSEETKYASEMIKAG 203
            MAFFGLT LG Q P  ++ +    L  F+  DW++A+      G  L+ E+++E +  K+       T E LP       ++ +YH      +VP +   L    L    + +  ITL AF+   +  C       ++ E++  +       +  SR          K     R P +K  +P+T  Q + W  P  +  + R+  +S EET+YAS M+KAG
Sbjct:    1 MAFFGLTGLGSQSPFELTKET--PLCAFSPQDWQDAFMQTVRPGFTLHSESDEEVDAAKQELTRASITYEQLP-----TLLQHLYHCPKGVNNVPESSTALVLEVLADYAATQERITLGAFMQHAERICRHGRRGRSQGESLSRTXEGRHPVARRSRRTSSTARRXTKHTRMARDPREKALLPMTDTQTLGWNKPTII--TTRRPTKSCEETRYASAMVKAG 213          
BLAST of NO18G01430 vs. NCBI_GenBank
Match: XP_009524810.1 (hypothetical protein PHYSODRAFT_497395 [Phytophthora sojae] >EGZ22093.1 hypothetical protein PHYSODRAFT_497395 [Phytophthora sojae])

HSP 1 Score: 65.1 bits (157), Expect = 3.000e-7
Identity = 60/223 (26.91%), Postives = 99/223 (44.39%), Query Frame = 0
Query:    2 AFFGLTALGPQDPLAVSTDAVQH--LHIFTDTDWKEAY------GRQLYENNQEHNRKKRSKI-GCVATAEALPLKCVFATMEDVYHGSVPPADQRLFERWLRPPSQEA----TITLTAFLTAVQGACTEAETMIASRRF-----DAGPSCESRSWQEYFSNLRKCKASVRAPSQKQTVPLTAQQQIDWETPAFVAASERKAIRSSEETKYASEMIKAGHFLF 207
            AFFGLT LG Q P     D V+   +H F   D+++A+      G  LY  + E  +   +++     T   LP+   +         +V  + ++L E+  R  S  A    +I L  FL  ++  C  +++M ++        D   + E  S  ++   L K     + P QK   P+T    + W  P    A++RK  +S EET+YA  M+KAG + +
Sbjct:    3 AFFGLTLLGSQSPF----DPVKETPIHAFQSRDFQDAFMQTYRPGFSLYSESDEEAQAANAELYSATITLAQLPVMLRYLYKCPRGVDNVSASTRKLVEQAFRLQSVGADASQSIDLQTFLAQMEELCRHSQSMESAAAHSAYLKDGATTREFVSNLDFLGKLVKHTRMEKDPRQKTLAPVTDSMTLGWNPPTM--ATKRKPTKSCEETRYACAMVKAGVYYY 219          
BLAST of NO18G01430 vs. NCBI_GenBank
Match: POM77260.1 (Hypothetical protein PHPALM_5385 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 64.3 bits (155), Expect = 5.000e-7
Identity = 57/222 (25.68%), Postives = 104/222 (46.85%), Query Frame = 0
Query:    2 AFFGLTALGPQDPLAVSTDAVQH--LHIFTDTDWKEAY------GRQLYENNQEHNRKKRSKI-GCVATAEALPLKCVFATMEDVYHGSVPPADQRLFERWLRPPSQE---ATITLTAFLTAVQGACTEAETMIASRRF-----DAGPSCESRSWQEYFSNLRKCKASVRAPSQKQTVPLTAQQQIDWETPAFVAASERKAIRSSEETKYASEMIKAGHFLF 207
            AFFGLT LG Q P     D V+   +H F   D+++A+      G  LY  + E  +   +++     T   LP+   +         +VP + + L E+  R         +I L  FLT ++  C  ++++ ++  +     D  P+ E  S  ++ + + K +   + P +K  +P+T    + W +P     ++RK  +S EET++AS M+KAG + +
Sbjct:    3 AFFGLTYLGSQSPF----DPVKETPIHTFQPCDFQDAFMQTYRPGFSLYSESDEEAQAANAELDSATITLAQLPVMLRYLYKCPKGVDNVPASIRTLVEQAFRLQDGSDSCQSINLPTFLTRMEEVCRHSQSLQSAASYNAYVKDGLPTREFVSNLDFRAKMVKHQRMQKNPQEKALLPVTDTLTLGWNSPTM--ETKRKPNKSCEETRFASAMVKAGVYYY 218          
The following BLAST results are available for this feature:
BLAST of NO18G01430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
GAY03579.12.700e-830.41Hypothetical protein PINS_011403 [Pythium insidios... [more]
GAY03580.11.300e-727.48Hypothetical protein PINS_011402 [Pythium insidios... [more]
XP_009524810.13.000e-726.91hypothetical protein PHYSODRAFT_497395 [Phytophtho... [more]
POM77260.15.000e-725.68Hypothetical protein PHPALM_5385 [Phytophthora pal... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01430.1NO18G01430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633663gene_9073Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01430.1NO18G01430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01430 ID=NO18G01430|Name=NO18G01430|organism=Nannochloropsis oceanica|type=gene|length=621bp
ATGGCCTTTTTCGGGCTTACGGCCCTTGGTCCCCAGGACCCGCTTGCAGT
CTCCACAGACGCAGTCCAGCATTTGCATATTTTCACTGACACAGACTGGA
AAGAGGCCTATGGCAGACAGCTCTACGAGAACAATCAAGAACACAACAGG
AAGAAGAGGTCGAAAATCGGCTGTGTCGCAACCGCAGAAGCCTTGCCCTT
GAAGTGTGTTTTCGCAACGATGGAGGACGTTTACCACGGCTCTGTCCCAC
CTGCCGACCAGCGTCTCTTCGAAAGATGGCTGAGGCCGCCTTCTCAAGAG
GCCACCATCACTCTTACCGCCTTTCTCACTGCCGTTCAAGGTGCATGTAC
AGAGGCAGAAACCATGATAGCCAGCCGCAGGTTTGACGCGGGTCCCTCGT
GTGAGAGCCGGTCCTGGCAGGAATATTTCAGCAACCTGCGCAAGTGCAAA
GCCAGCGTTCGTGCCCCGTCGCAGAAGCAGACAGTGCCCTTGACGGCCCA
GCAGCAAATTGATTGGGAGACCCCTGCGTTCGTTGCGGCGAGTGAACGCA
AGGCCATCCGCAGCAGCGAGGAGACCAAGTACGCCTCGGAAATGATCAAG
GCAGGCCACTTCTTGTTCTGA
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protein sequence of NO18G01430.1

>NO18G01430.1-protein ID=NO18G01430.1-protein|Name=NO18G01430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MAFFGLTALGPQDPLAVSTDAVQHLHIFTDTDWKEAYGRQLYENNQEHNR
KKRSKIGCVATAEALPLKCVFATMEDVYHGSVPPADQRLFERWLRPPSQE
ATITLTAFLTAVQGACTEAETMIASRRFDAGPSCESRSWQEYFSNLRKCK
ASVRAPSQKQTVPLTAQQQIDWETPAFVAASERKAIRSSEETKYASEMIK
AGHFLF*
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Synonyms
Publications