NO18G01400, NO18G01400 (gene) Nannochloropsis oceanica

Overview
NameNO18G01400
Unique NameNO18G01400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1710
Alignment locationchr18:469354..471063 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:469354..471063 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019327DUF2373
Homology
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BLAST of NO18G01400 vs. NCBI_GenBank
Match: XP_005855979.1 (hypothetical protein NGA_0524400 [Nannochloropsis gaditana CCMP526] >EKU20388.1 hypothetical protein NGA_0524400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.9 bits (263), Expect = 1.800e-19
Identity = 63/116 (54.31%), Postives = 80/116 (68.97%), Query Frame = 0 
Query:  111 GGWKFHTKRQVWILKHMYTKSTIDKKFFNNLVLPYVSTLRGGAKERVLAEAEGYLLEGRKRRPGESDDENDEARE------EKNLTQKPQEGDDEV---TKQARRKRARKIVAVLS 218
            G W+F TKRQVWILKH+Y+++ IDK FF  LVLPY+STL GGAKERVL EA+GYL   R+  P  SD E++E +E      EK   ++  +G  EV   T + RRKRA+KIVA L+
Sbjct:   55 GEWRFQTKRQVWILKHLYSQNVIDKTFFKKLVLPYISTLHGGAKERVLTEAQGYL--QREAGPVRSDLESEEDKEGRGEGGEKGSDRRDSQGMTEVGESTNRVRRKRAKKIVAALA 168
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BLAST of NO18G01400 vs. NCBI_GenBank
Match: EWM23371.1 (Protein of unknown function DUF2373 [Nannochloropsis gaditana])

HSP 1 Score: 98.6 bits (244), Expect = 2.800e-17
Identity = 59/120 (49.17%), Postives = 75/120 (62.50%), Query Frame = 0 
Query:  107 RERGGGWKFHTKRQVWILKHMYTKSTIDKKFFNNLVLPYVSTLRGGAKERVLAEAEGYLLEGRKRRPGESDDENDEAR---------EEKNLTQKPQEGDDEVTKQARRKRARKIVAVLS 218
            ++RGG W+F TKRQVWILKH+Y+++ IDK FF  LVLPY+STL GGAKERVL EA+GYL   R+  P  SD E++E +                         T + RRKRA+KIVA L+
Sbjct:   35 QDRGGEWRFQTKRQVWILKHLYSQNVIDKTFFKKLVLPYISTLHGGAKERVLTEAQGYL--QREAGPVRSDLESEEDKXXXXXXXXXXXXXXXXXXXXXXXXXTNRVRRKRAKKIVAALA 152
The following BLAST results are available for this feature:
BLAST of NO18G01400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855979.11.800e-1954.31hypothetical protein NGA_0524400 [Nannochloropsis ... [more]
EWM23371.12.800e-1749.17Protein of unknown function DUF2373 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003997NSK003997Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01400.3NO18G01400.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO18G01400.2NO18G01400.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO18G01400.1NO18G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608003gene_9069Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g12gene7102Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01400.3NO18G01400.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO18G01400.2NO18G01400.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO18G01400.1NO18G01400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01400 ID=NO18G01400|Name=NO18G01400|organism=Nannochloropsis oceanica|type=gene|length=1710bp
TATGGCATTTTTGAGGCCATGGGCCGAGAGGCAGGAGGTCCATGGCCAAT
TACCTAGTCAATCCAATGCTTGCTGATCAAGTTAGATGATAAATCACTCT
TACCACGACTATGCTGTGGAGGATTATCGTTTCTCGGTCTTACATGATCC
TTCAGTGCTTTGAAAAGGCACCCTTTTTTGCGGAAAGTTGGGTTGGCTGA
GTGGCTGAAGGTTGGCGAGGAAGGCTTTGATGATCAGGAGGATTGTGTGC
TGTTTTGGAAGCTTCCAAGGAAGCATACCGTGGGGAATCTGTGACGCATC
TGGACGCCCAGTCAAATTCTGTAGTGCAACAAAAAAAGTGAGAGAGTTGC
CGGCGACGGATATGCGGAATGGTTGCCTACCCACGCAAGCGTAACTCTTC
ATCGTTCCTCCCCTCCCCCCCGTTAGCTATACAACGGACAGGACGCATCA
TGCCAACGGACGAGGAGGAGCCTGCGGCCGAGACCGCAGCAAATGCTCGC
CCGGTGGGTAAGCGGAAGAGGAAACAGAAGCGGAAGCTGGCCGCTGCCCG
TCCTTCCAAGCCAAGCCCCCAAAAGAAAGCCAAACCAAGCGCGTCCGCCG
AGGCAGAGGTGCGTCCATTTGCCCAGgtgggggagattaatgcttgccat
gtgcaccatttccagggaagatgggggcgtgcctgtttgctacagttttg
gaaagcgggaagacagccatcacgctacctcgctcctccaaacgacccct
cgtctgcctactgctctgtctcaacctctcttctccttcatacacataat
agAAGCAACTACACCAGAGAGGAGCGCAAGCAGCCAAGGAATATCTCGAA
CTGTGGTCTCTACGGgtaagcctgcctccacatgttctgtcttcgaaggc
atgcaggatgagcgagtccttgacctggttgccgagcaggcctgaaggtc
acggcaacgggggtaatgactgtcagtgagatgggaaaacacttgtcaat
gacaaaggtgtgatacactccgccttcatgtagagtttctatctgttgca
gcttcatcacgatttgtaagatatcttcttttgtaattttaccaatagGA
GCGAGGCGGCGGATGGAAGTTTCATACCAAGCGGCAAGTGTGGATTTTGA
AACATATGTACACCAAAAGCACCATTGACAAGAAGTTCTTCAACAATCTG
GTGCTGCCCTATGTGAGCACTCTACGAGGCGGGGCTAAGGAGgtaaggat
ggggaaatgggtgttgaaagcgggaagacgagtcgttgccccttttttag
tatgtcgttaccaccttacccccccttccctcactcttttctccctttct
taccttcccttccatgcagCGTGTTTTGGCGGAGGCAGAGGGCTACCTAC
TTGAAGGACGAAAGAGGAGACCAGGTGAAAGCGACGACGAAAATGACGAG
GCCAGGGAGGAGAAGAACCTAACACAGAAGCCCCAGGAGGGAGACGATGA
GGTGACAAAGCAAGCGAGGAGGAAACGGGCAAGGAAAATTGTGGCGGTCT
TGTCAAGAGGTGGCAAAGGTATGAAACATGATGGAGATAACGACTTACAA
AGAGAGAACAGAAAAAGAGACCAAACGAAGTAGGCAAGTAAGGGTAATAA
CTACAAGATCTTATTATGCATGAAAGAGCATGTTTTTCAAATGTAAATTT
GCTGCTGGAG
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protein sequence of NO18G01400.3

>NO18G01400.3-protein ID=NO18G01400.3-protein|Name=NO18G01400.3|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MVAYPRKRNSSSFLPSPPLAIQRTGRIMPTDEEEPAAETAANARPVGKRK
RKQKRKLAAARPSKPSPQKKAKPSASAEAEVRPFAQKQLHQRGAQAAKEY
LELWSLRERGGGWKFHTKRQVWILKHMYTKSTIDKKFFNNLVLPYVSTLR
GGAKERVLAEAEGYLLEGRKRRPGESDDENDEAREEKNLTQKPQEGDDEV
TKQARRKRARKIVAVLSRGGKGMKHDGDNDLQRENRKRDQTK*
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protein sequence of NO18G01400.2

>NO18G01400.2-protein ID=NO18G01400.2-protein|Name=NO18G01400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MTVSEMGKHLSMTKERGGGWKFHTKRQVWILKHMYTKSTIDKKFFNNLVL
PYVSTLRGGAKERVLAEAEGYLLEGRKRRPGESDDENDEAREEKNLTQKP
QEGDDEVTKQARRKRARKIVAVLSRGGKGMKHDGDNDLQRENRKRDQTK*
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protein sequence of NO18G01400.1

>NO18G01400.1-protein ID=NO18G01400.1-protein|Name=NO18G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MVAYPRKRNSSSFLPSPPLAIQRTGRIMPTDEEEPAAETAANARPVGKRK
RKQKRKLAAARPSKPSPQKKAKPSASAEAEKQLHQRGAQAAKEYLELWSL
RERGGGWKFHTKRQVWILKHMYTKSTIDKKFFNNLVLPYVSTLRGGAKER
VLAEAEGYLLEGRKRRPGESDDENDEAREEKNLTQKPQEGDDEVTKQARR
KRARKIVAVLSRGGKGMKHDGDNDLQRENRKRDQTK*
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Synonyms
Publications