NO18G01330, NO18G01330 (gene) Nannochloropsis oceanica

Overview
NameNO18G01330
Unique NameNO18G01330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3424
Alignment locationchr18:447811..451234 -

Link to JBrowse

Properties
Property NameValue
DescriptionEEIG1/EHBP1 N-terminal domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:447811..451234 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019448NT-C2
Homology
BLAST of NO18G01330 vs. NCBI_GenBank
Match: EWM23370.1 (EEIG1/EHBP1 N-terminal domain protein [Nannochloropsis gaditana])

HSP 1 Score: 233.4 bits (594), Expect = 2.900e-57
Identity = 152/327 (46.48%), Postives = 184/327 (56.27%), Query Frame = 0
Query:    1 MSKIFRSAMRLNKTKYSFQLSVSIKTLRLHPMHNDKEIMVSLTKGGSKSVSSEHPRKPGGAWNETLSLGTTLYRDSHGRYQEKKFLLVVKHSGTGKTLATFKFDASRFASAAGTKEACEFQSINPKDDGRIRVEVTCVFLRQLDTQESEISSVXXXXXXXXXXXGRE--DEQDLSGWSLGGAFESG---AGESFASIAAIMLPESSPLSPXXXXXXXXXXXXXXXXXXXPPPVTVVGMGHMPSFRRSTDLRPPRHNQSPRTKPLVSSSSSETDATTPVQGKENLRKRLARLEETHGIVLTQKQAVEEQLQVLRTEFQRDQQLQCRQA 323
            MS+ FRSA RLNKTKY+FQL VSIK +RLHPMHN+KE++V + KGG+KS  +  PRKP GAW+ETLS+  TLYRDSHGRYQEKK+  +VK +GT KTLATFK DAS FASAAGTKE C  QSINPKDDGRI VEV+C FLRQL++Q SE+SSV           G E  +EQDLSGW  GG  + G   AG S    A+     SSPLSP                      V                                          + VQ +E L +RL RLE+ +  +   K A E+ +  LR E  +D++L   QA
Sbjct:    1 MSQFFRSASRLNKTKYTFQLVVSIKHVRLHPMHNEKEVIVIMKKGGNKSTCTATPRKP-GAWSETLSMVVTLYRDSHGRYQEKKYTFLVKQAGTNKTLATFKLDASHFASAAGTKEQCSLQSINPKDDGRIVVEVSCAFLRQLESQGSEVSSV------ISSISGEELGEEQDLSGWGAGGEVDVGDEPAGHSLGGFASSNASPSSPLSP-AVAAAPRKGPYPSSSATPTGAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTASFVQEREELLERLTRLEDANAALSADKAAKEQDVLSLRAERAKDRRLLQEQA 319          
The following BLAST results are available for this feature:
BLAST of NO18G01330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23370.12.900e-5746.48EEIG1/EHBP1 N-terminal domain protein [Nannochloro... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003989NSK003989Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01330.1NO18G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607955gene_9060Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g4gene7108Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01330.1NO18G01330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01330 ID=NO18G01330|Name=NO18G01330|organism=Nannochloropsis oceanica|type=gene|length=3424bp
ACAGACACGGGAAGTCTGCGTTGTTCCAGCCACACAGCCGGCCCGGGTGT
GCGCTCAGACCGAAAACAGGGAAGGTGGCTAATAGTAGCATTTTAGTGAT
TTGTTCTGAGAGAGGCAGAAGAAGCGCCATTGCAGCACGCAGCCACATCG
TCCCTGCCACACAATAGCACAGCTTTGTCCTACAGGGAGCAAGTACCATT
TTGTACGCACGTAGTTGACAGCCGTACACAGCCTCATCGTAAACTCCATC
CCAAGATCAGGAACCGTGTCACCATCCCAACGAAAACCACTACAAGTCTT
CTGATCAAGACAAGAAGAACGAATACCACCATGAGTAAGATTTTCCGTTC
GGCCATGCGGCTCAACAAGACCAAATACAGCTTCCAGCTTTCCGTTAGCA
TCAAGACGCTGCGCTTGCACCCCATGCACAACGACAAGGAAATCATGGTG
AGCCTGACCAAGGGTGGGAGTAAGAGCGTCAGCTCCGAACATCCCCGCAA
GCCTGGCGGAGCCTGGAATGAGACTCTTTCCTTGGGTACAACTCTTTACC
GGGACTCGCATGGACGGTACCAGGAAAAGAAGTTTTTGCTGGTGGTGAAG
CATTCCGGGACGGGCAAGACCTTGGCGACCTTCAAATTTGATGCTTCACG
TTTCGCTTCTGCGGCGGGTACGAAGGAAGCCTGTGAGTTTCAGAGCATCA
ATCCGAAAGATGACGGTCGAATTAGGGTGGAGGTGACCTGTGTCTTCCTG
CGGCAGTTGGACACTCAGGAGAGCGAAATCTCCAGCGTGGTATCGAGTGT
AGTGGGCGATGACGTGGATGACGGCAGGGAAGACGAACAGGACTTGAGCG
GTTGGAGCTTAGGTGGCGCCTTCGAGAGCGGTGCCGGCGAGTCATTCGCA
TCGATTGCGGCGATCATGCTGCCCGAGTCATCACCTCTCTCTCCCCCTTC
TTCTGCTACTACCGACACCACTCCCACTTTCTCCTCTCCTTCGTCCATGC
AGCCCCCACCAGTCACCGTCGTGGGTATGGGCCACATGCCTTCCTTCCGC
CGCAGCACCGACCTCCGCCCTCCACGCCACAATCAGTCACCACGCACCAA
ACCACTAGTAAGCAGCAGTAGCAGTGAGACCGATGCAACTACCCCCGTCC
AGGGAAAAGAAAATCTCAGGAAGCGGTTGGCCCGGCTGGAAGAAACACAC
GGCATAGTCCTGACCCAAAAACAGGCCGTCGAAGAACAGCTACAGGTATT
GCGGACGGAATTTCAGAGGGACCAACAGCTTCAATGCAGGCAAGCGACAG
AAAAGGAGGAGACGATGAGGGCTATGCAGCAGCGGTTAGTCGAGTTGGGG
GAGCACGTCAGGGACAGGGACGGGGAGCTGGTCTGCGCACAAGAGGTGCT
CACGGAAAAAGAAGCCGAGATTAGCGTGGCACGTGAGAGGGAGACCCGCC
TCAAGGCTCAGGTGCAGGAGGTAGAAGAGGGGAGGGAGAAATTACTGCGT
GCAAAGGAGGAGCGAGAGGCAGCTTTTGAGAAAGCACAGCGAGCAGCAGC
GGCGGATGTTGAGCGGTTGCAGAACGAGCTATTTATTCTGAAAGAGTCAA
TCACTAGCCCCCCAAAGCTGCAGTATACCCCTCAAGAGCTGCAGCAAGAG
CAGGAAAGTGATGACACTACAGAAGCATCGCCAGAAGTCGCGACGATGGG
AGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCCAAAGCGAAAG
AGACGAATGGCGTGGTAATGGCCAAGCTGAAGGCATTGGAGGAAGAACGC
TTAGCCCTGCTGCACGACAAAGCGGAGCTCACAGATGAATTAAAGGAAAC
GAAGGCGACATTGGACGAGGCTCGAGTACGTCATACCCAAATGGAGAAGG
AACGGGCTGCCTTAGCCTTGCGCCTGGCGGAAATGGAAGAGCAGGAGCAG
CGGCGTCAGACGCAATGTGCAGAAACTCCAAGAGAGAAATGCAAGGGAGA
AATTGAGGGGTTACGTACCCAGGTCAAGTGTCTGGAGGAGGAATGCCGAG
TCGCTACAGAGCGTGCAAGTGCAGCAGAGGCGACTGCCGCGAAGATAGCC
GAAGCAGAAGTGCGATTGGCAGCACAGCTTGGGCAGGAGCAAGAACAGTT
AGCAGCGACGGTGGATAAGCAAAGTGAACACGTGCAGGCCCTCCTAGCTC
AGAGGGGTCAGTGGGACATGGAGAAAGAGGGATTGACGGTACGGGTGGCT
GAGCTCGTTTCGTCGTTGAAAATAGAGAAGCAAGAGGCTAAAAATGCCCT
GCAATCCCTGAAGCAAGCTAAGGAGACAGTTGCGACCAATGCAGCTGAAG
CGGCGGCGGTGCTCGTGGAGAAAGAAAGGATCATAGTGCAATTACAGACA
ATGGAGGCTGAAAAGACTTGTCTGCTTAAGGAGATCGATGAGGAACGCCA
ACATTGGGTGGCGGAAGCGCAGGGTCACGAGAAGCAGCGATTGGAATGGA
CAAGCAAGAAAGAAGAGATGCTTGCACGAATGGGGGAGCTGGAGGCCGCG
CTTGAGGCTGCGAGGGAGGAAGTGAAGGAAGGCAGACGATGTGCGGCGGT
GAAACTGGAAGAGAGGGAGGCCGCGTGGGTGATGGAGAAGCAGGACATGG
CAACGCGACTGCTGGTGGTGGAGGGGGACAAGACGCGTCTCAAGACTACA
TTAGAGGAAGAAATGCAGCGACGACTAGACAAGGTGAAGGAGGAGGAGGA
GGTTGGACTTGCGGAGTGGATGGAGGAAAGGCAGGCCCTGCTTCTGACAG
TGGCGGAGCTCAAGGGCGATGTAGCGTCATCCAGTGAAGAAGCAGCAGCG
CTACGGGATGAAGCAAGAGATGCATGGAGGTCACTGACACTAGCCAAGGA
GGAGGTGGAGGCGCATGCTGCGGCGGAGAGGGAGCTGGAACGGAGCTTGC
AGCTGATGCAGACGCAGGTCATTCACGTGGAGGGTAATGTGAGAGCTGAA
CGGGAGGCAAGAGAGGAGGCGGATAGCGAGGCGGCGGGGGCGATGGACAG
GTTGCGGGCATTGGAGGGGGAGATGGGTGAGGTGGTGGAGGAAAGGAATA
CGTATCAGGAGGGGTTAGTGGATGCTAAGTTGAAAATTGCGCAGTTGAGT
GAGGAATTGGACTCGCTGTCGTTTCAGTTGCAGCACTATCGCATGGGGAA
GTGAGAGGGTGGTAGTTGTGTAGTAGATATAAGATAAGTAAGGGAAGGGA
GACAGAAACATTCCGTATTTTGCTGTTGCTTCTTTTTTTGGGCTGTGCAA
TAGGATACGGATGCATAAGTAGTGGTGGTAGAGGAAGATCGATAAGACGG
TAGGCACAAATTCCAATTGAGAACACATAAATACAACACCTGTCATGCGC
AAAATACTCAATGAAGAGTCTTTG
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protein sequence of NO18G01330.1

>NO18G01330.1-protein ID=NO18G01330.1-protein|Name=NO18G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=958bp
MSKIFRSAMRLNKTKYSFQLSVSIKTLRLHPMHNDKEIMVSLTKGGSKSV
SSEHPRKPGGAWNETLSLGTTLYRDSHGRYQEKKFLLVVKHSGTGKTLAT
FKFDASRFASAAGTKEACEFQSINPKDDGRIRVEVTCVFLRQLDTQESEI
SSVVSSVVGDDVDDGREDEQDLSGWSLGGAFESGAGESFASIAAIMLPES
SPLSPPSSATTDTTPTFSSPSSMQPPPVTVVGMGHMPSFRRSTDLRPPRH
NQSPRTKPLVSSSSSETDATTPVQGKENLRKRLARLEETHGIVLTQKQAV
EEQLQVLRTEFQRDQQLQCRQATEKEETMRAMQQRLVELGEHVRDRDGEL
VCAQEVLTEKEAEISVARERETRLKAQVQEVEEGREKLLRAKEEREAAFE
KAQRAAAADVERLQNELFILKESITSPPKLQYTPQELQQEQESDDTTEAS
PEVATMGATAAAAAAAAATAKAKETNGVVMAKLKALEEERLALLHDKAEL
TDELKETKATLDEARVRHTQMEKERAALALRLAEMEEQEQRRQTQCAETP
REKCKGEIEGLRTQVKCLEEECRVATERASAAEATAAKIAEAEVRLAAQL
GQEQEQLAATVDKQSEHVQALLAQRGQWDMEKEGLTVRVAELVSSLKIEK
QEAKNALQSLKQAKETVATNAAEAAAVLVEKERIIVQLQTMEAEKTCLLK
EIDEERQHWVAEAQGHEKQRLEWTSKKEEMLARMGELEAALEAAREEVKE
GRRCAAVKLEEREAAWVMEKQDMATRLLVVEGDKTRLKTTLEEEMQRRLD
KVKEEEEVGLAEWMEERQALLLTVAELKGDVASSSEEAAALRDEARDAWR
SLTLAKEEVEAHAAAERELERSLQLMQTQVIHVEGNVRAEREAREEADSE
AAGAMDRLRALEGEMGEVVEERNTYQEGLVDAKLKIAQLSEELDSLSFQL
QHYRMGK*
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Synonyms
Publications