NO18G01320, NO18G01320 (gene) Nannochloropsis oceanica

Overview
NameNO18G01320
Unique NameNO18G01320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length755
Alignment locationchr18:446821..447575 +

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Properties
Property NameValue
DescriptionHistone deacetylase complex subunit sap18
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:446821..447575 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010516SAP18
Homology
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_006385749.1 (histone deacetylase complex subunit SAP18 [Populus trichocarpa] >PNT45122.1 hypothetical protein POPTR_003G119300v3 [Populus trichocarpa])

HSP 1 Score: 121.3 bits (303), Expect = 2.600e-24
Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSVRNNGRTPDDGRTLRDCKFHIGDHLDVAIL 136
            IDR+KT P LLRVF K   H+   D+ +  K+ P  ++  YTW DATL+EL+ L+K+V P ARRR A+L F+ VYP   GR  +R VG   ++GR PDD + L +  F IGD+LDVAI+
Sbjct:   43 IDREKTCPLLLRVFTKIGSHHKPEDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKHGRFVLRVVGMTHSSGRRPDDLKALAELNFQIGDYLDVAIM 160
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_011033838.1 (PREDICTED: histone deacetylase complex subunit SAP18-like [Populus euphratica])

HSP 1 Score: 121.3 bits (303), Expect = 2.600e-24
Identity = 59/119 (49.58%), Postives = 79/119 (66.39%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSVRNNGRTPDDGRTLRDCKFHIGDHLDVAIL 136
            IDR+KT P LLRVF K   H+   D+ +  K+ P  ++  YTW DATL+EL+ L+K+V P ARRR A+L F+ VYP   GR  +R VG   ++GR PDD + L +  F IGD+LDVAI+
Sbjct:   43 IDREKTCPLLLRVFTKIGSHHKPEDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKHGRFVLRVVGMTHSSGRRPDDLKALAELNFQIGDYLDVAIM 160
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_022152730.1 (histone deacetylase complex subunit SAP18-like [Momordica charantia])

HSP 1 Score: 121.3 bits (303), Expect = 2.600e-24
Identity = 61/121 (50.41%), Postives = 81/121 (66.94%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSVRN--NGRTPDDGRTLRDCKFHIGDHLDVAIL 136
            +DR+KT P LLRVF K  GH+SD D+ +  K+ P  ++  YTW DATL+EL+ L+K+V P ARRR A+L F+ VYP   GR  ++ VG   +  NGR  DD + L +  F IGD+LDVAIL
Sbjct:   47 VDREKTCPLLLRVFTKVGGHHSDEDFAIRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_023928495.1 (histone deacetylase complex subunit SAP18 [Quercus suber] >POE90816.1 histone deacetylase complex subunit sap18 [Quercus suber])

HSP 1 Score: 121.3 bits (303), Expect = 2.600e-24
Identity = 61/121 (50.41%), Postives = 83/121 (68.60%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSVRN--NGRTPDDGRTLRDCKFHIGDHLDVAIL 136
            +DR+KT P LLRVF K  GH+ D D+ +  K+ P  ++  YTW DATL+EL+ L+K+V P ARR+ ARL F+ VYP   GR +++ VG   +  NGR  DD +TL + +F IGD+LDVAIL
Sbjct:   33 VDREKTCPLLLRVFTKIGGHHGDEDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPAARRKSARLSFAFVYPDNNGRFKVKEVGMTYSYGNGRL-DDSKTLAELRFQIGDYLDVAIL 151
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: OMO89676.1 (Sin3 associated polypeptide p18 [Corchorus capsularis])

HSP 1 Score: 120.9 bits (302), Expect = 3.400e-24
Identity = 62/122 (50.82%), Postives = 81/122 (66.39%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVG---SVRNNGRTPDDGRTLRDCKFHIGDHLDVAIL 136
            +DR+KT P LLRVF K   H+S+ D+ +  K+ P  ++  YTW DATL+EL+ L+K+V P ARR+ ARL F+ VYPG  GR  +R VG   S  N  R  DD + L D +F IGD+LDVAIL
Sbjct:   35 VDREKTCPLLLRVFKKIGSHHSEEDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPEARRKNARLSFAFVYPGKRGRFLLRQVGVTNSYGNGRRVLDDNKALTDLRFQIGDYLDVAIL 155
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_008448944.1 (PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 5.700e-24
Identity = 60/121 (49.59%), Postives = 81/121 (66.94%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSVRN--NGRTPDDGRTLRDCKFHIGDHLDVAIL 136
            +DR+KT P LLRVF K  GH++D D+ +  K+ P  ++  YTW DATL+EL+ L+K+V P ARRR A+L F+ VYP   GR  ++ VG   +  NGR  DD + L +  F IGD+LDVAIL
Sbjct:   47 VDREKTCPLLLRVFTKVGGHHTDEDFAIRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_004147963.1 (PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis sativus] >KGN55941.1 hypothetical protein Csa_3G038150 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 7.500e-24
Identity = 60/121 (49.59%), Postives = 81/121 (66.94%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSVRN--NGRTPDDGRTLRDCKFHIGDHLDVAIL 136
            +DR+KT P LLRVF K  GH++D D+ +  K+ P  ++  YTW DATL+EL+ L+K+V P ARRR A+L F+ VYP   GR  ++ VG   +  NGR  DD + L +  F IGD+LDVAIL
Sbjct:   47 VDREKTCPLLLRVFTKVGGHHTDEDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_006295168.1 (histone deacetylase complex subunit SAP18 [Capsella rubella] >EOA28066.1 hypothetical protein CARUB_v10024248mg [Capsella rubella])

HSP 1 Score: 119.8 bits (299), Expect = 7.500e-24
Identity = 60/120 (50.00%), Postives = 80/120 (66.67%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSVRN--NGRTPDDGRTLRDCKFHIGDHLDVAI 135
            +DR+KT P LLRVF K  GH+S  DY +  K+ P  ++  YTW DATL+EL+ L+K+V   ARRR ARL F+ VYP   GR  ++ VG   +  N + PDD +TL + +F IGD+LDVAI
Sbjct:   32 VDREKTCPLLLRVFTKTGGHHSQEDYAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVSVAARRRNARLSFAFVYPDSHGRFIVKEVGQTMSYPNRKQPDDSKTLSELRFEIGDYLDVAI 150
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_006397742.1 (histone deacetylase complex subunit SAP18 [Eutrema salsugineum] >ESQ39195.1 hypothetical protein EUTSA_v10001671mg [Eutrema salsugineum])

HSP 1 Score: 119.8 bits (299), Expect = 7.500e-24
Identity = 61/120 (50.83%), Postives = 80/120 (66.67%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSVRN--NGRTPDDGRTLRDCKFHIGDHLDVAI 135
            +DR+KT P LLRVF K  GH+S  DY +  K+ P  ++  YTW DA+L+EL++L+K+V   ARRR ARL F+ VYP   GR  +R VG   +  N + PDD +TL D  F IGD+LDVAI
Sbjct:   32 VDREKTCPLLLRVFTKTGGHHSKEDYAVRGKE-PKDEVQIYTWKDASLRELTELVKEVSVAARRRDARLSFAFVYPLKNGRFAVRQVGQTMSYPNRKQPDDSKTLADLDFEIGDYLDVAI 150
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_011083644.1 (histone deacetylase complex subunit SAP18 [Sesamum indicum])

HSP 1 Score: 119.8 bits (299), Expect = 7.500e-24
Identity = 64/124 (51.61%), Postives = 82/124 (66.13%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSVRN--NGRTPDDG-RTLRDCKFHIGDHLDVAILDE 138
            +DR+KT P LLRVF K  GH+SD D+ +  K+ P  ++  YTW DATL+EL+ L+K+V P ARRR A L F+ VYP   GR  +R VG   +  NGR PD G + L D  F IGD+LDVAIL +
Sbjct:   35 VDREKTCPLLLRVFTKVGGHHSDEDFAVRGKE-PKDEVQIYTWMDATLRELTDLVKEVAPEARRRDAILSFAFVYPDKRGRFVVREVGRTFSYPNGRRPDSGSKALGDLSFQIGDYLDVAILTQ 157
The following BLAST results are available for this feature:
BLAST of NO18G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_006385749.12.600e-2449.58histone deacetylase complex subunit SAP18 [Populus... [more]
XP_011033838.12.600e-2449.58PREDICTED: histone deacetylase complex subunit SAP... [more]
XP_022152730.12.600e-2450.41histone deacetylase complex subunit SAP18-like [Mo... [more]
XP_023928495.12.600e-2450.41histone deacetylase complex subunit SAP18 [Quercus... [more]
OMO89676.13.400e-2450.82Sin3 associated polypeptide p18 [Corchorus capsula... [more]
XP_008448944.15.700e-2449.59PREDICTED: histone deacetylase complex subunit SAP... [more]
XP_004147963.17.500e-2449.59PREDICTED: histone deacetylase complex subunit SAP... [more]
XP_006295168.17.500e-2450.00histone deacetylase complex subunit SAP18 [Capsell... [more]
XP_006397742.17.500e-2450.83histone deacetylase complex subunit SAP18 [Eutrema... [more]
XP_011083644.17.500e-2451.61histone deacetylase complex subunit SAP18 [Sesamum... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003988NSK003988Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01320.1NO18G01320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674271gene_9059Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g3gene7109Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01320.1NO18G01320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01320 ID=NO18G01320|Name=NO18G01320|organism=Nannochloropsis oceanica|type=gene|length=755bp
ATGATTGGTGGGCCTGAAGGGGCATGGGGTGGAGACGACGAAGGATTGAT
CGACCGAGACAAGgtgagacagtgcgcattgaaagaggggagggaggagg
gagggggcaaggaggctcggagtgaagcctctaagccaggctttgagccg
catcgtatgactgggaggatgcaacgggccccgatgcacttgcagaagtg
agtgatcccggaccacattgatattctgggtgaatttgaaggccgatgca
gtgcccagtcctttcacctttgccccctccccttcacctcaaaccaacca
tgcgaagccctttcaccgcaatcctccatccacgaattatcttccattta
cccctctagACGACACCCTCCTTGCTGCGCGTCTTTTGGAAGGAACACGG
GCACAACAGCGACCTAGACTATGGCCTGGAACCCAAGCAAGTACCCGGGC
AACAACTGCACTTTTACACGTGGCCAGATGCCACCCTCAAGGAGCTGAGT
CAATTGCTAAAGGACGTAGTACCTTGCGCCCGTCGTCGTGTAGCCCGGCT
GGAGTTCTCGTTGGTGTACCCAGGGCCGGAGGGTAGGATGAGGATGCGAG
CTGTGGGGTCGGTAAGGAACAATGGGAGGACGCCGGATGATGGGAGAACG
TTGCGGGATTGCAAATTTCATATTGGCGATCATTTGGACGTTGCCATTTT
GGACGAAGGAGGAGGTGGAGGGGGGGAGGAGGGAGAGGTTATGGTGGGGG
GATAG
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protein sequence of NO18G01320.1

>NO18G01320.1-protein ID=NO18G01320.1-protein|Name=NO18G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MIGGPEGAWGGDDEGLIDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVP
GQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRM
RAVGSVRNNGRTPDDGRTLRDCKFHIGDHLDVAILDEGGGGGGEEGEVMV
GG*
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Synonyms
Publications