NO18G01320, NO18G01320 (gene) Nannochloropsis oceanica

Overview
NameNO18G01320
Unique NameNO18G01320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length755
Alignment locationchr18:446821..447575 +

Link to JBrowse

Properties
Property NameValue
DescriptionHistone deacetylase complex subunit sap18
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:446821..447575 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010516SAP18
Homology
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: EWM23350.1 (histone deacetylase complex subunit sap18 [Nannochloropsis gaditana])

HSP 1 Score: 235.3 bits (599), Expect = 1.200e-58
Identity = 104/129 (80.62%), Postives = 120/129 (93.02%), Query Frame = 0 
Query:   10 GGDDEGLIDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSVRNNGRTPDDGRTLRDCKFHIGDHLDVAILDEG 139
            GG+ +GLIDR+K TPSLLRVFWKEHGHNSDLDYG + KQ+PG+QLHFYTWPDATLKELSQLLKDVVPCARRR +R+EFSLVYPGPEGR RMR VGSVRN+GR+P+D +TLRDCK+ IGDHLD+A++DEG
Sbjct:   12 GGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVMDEG 140
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BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_005855975.1 (histone deacetylase complex subunit SAP18 [Nannochloropsis gaditana CCMP526] >EKU20384.1 histone deacetylase complex subunit SAP18 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 229.2 bits (583), Expect = 8.700e-57
Identity = 102/127 (80.31%), Postives = 117/127 (92.13%), Query Frame = 0 
Query:   10 GGDDEGLIDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSVRNNGRTPDDGRTLRDCKFHIGDHLDVAILD 137
            GG+ +GLIDR+K TPSLLRVFWKEHGHNSDLDYG + KQ+PG+QLHFYTWPDATLKELSQLLKDVVPCARRR +R+EFSLVYPGPEGR RMR VGSVRN+GR+P+D +TLRDCK+ IGDHLD+A+ D
Sbjct:   12 GGNSDGLIDREKVTPSLLRVFWKEHGHNSDLDYGRDGKQLPGRQLHFYTWPDATLKELSQLLKDVVPCARRRGSRMEFSLVYPGPEGRTRMRMVGSVRNSGRSPEDAKTLRDCKYQIGDHLDIAVED 138
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_007051984.2 (PREDICTED: histone deacetylase complex subunit SAP18 [Theobroma cacao])

HSP 1 Score: 124.4 bits (311), Expect = 3.000e-25
Identity = 63/121 (52.07%), Postives = 81/121 (66.94%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSV--RNNGRTPDDGRTLRDCKFHIGDHLDVAIL 136
            +DR+KT P LLRVF K  GH+S  D+ +  K+ P  ++  YTW DATL+EL+ L+K+V P ARRR ARL F+ VYP   GR  +R VG      NGR  DDG+TL +  F IGD+LDVAI+
Sbjct:   34 VDREKTCPLLLRVFTKIGGHHSKEDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFVVREVGKTFSYGNGRRLDDGKTLGELSFEIGDYLDVAIM 153
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_002882023.1 (histone deacetylase complex subunit SAP18 [Arabidopsis lyrata subsp. lyrata] >EFH58282.1 hypothetical protein ARALYDRAFT_904009 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 124.0 bits (310), Expect = 4.000e-25
Identity = 61/120 (50.83%), Postives = 82/120 (68.33%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSVRN--NGRTPDDGRTLRDCKFHIGDHLDVAI 135
            +DR+KT P LLRVF K  GH+++ DY +  ++ P  ++  YTW DATL+EL+ L+K+V   ARRR ARL F+ VYP  +GR  MR VG   +  N + PDD +TL D +F IGD+LDVAI
Sbjct:   32 VDREKTCPLLLRVFTKSGGHHTNEDYAVRGRE-PKDEVQIYTWKDATLRELTDLVKEVSVAARRRNARLSFAFVYPDKQGRFTMREVGQTMSFPNRKQPDDSKTLSDLRFEIGDYLDVAI 150
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: GAV76669.1 (SAP18 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 123.6 bits (309), Expect = 5.200e-25
Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVG-SVRNNGRTPDDGRTLRDCKFHIGDHLDVAIL 136
            IDR+KT P LLRVF K   H++  D+ +  K+ P  ++  YTW DATL+EL+ L+K+V P AR++ ARL F+LVYP   GR  +R  G +   NGR  DDG+TL D  F IGD+LDVAIL
Sbjct:   35 IDREKTCPLLLRVFTKIGSHHTKEDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPAARKKTARLSFALVYPDKSGRFVVREAGMTFSGNGRRMDDGKTLADLTFQIGDYLDVAIL 153
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: EOX96141.1 (SIN3 associated polypeptide P18 [Theobroma cacao])

HSP 1 Score: 123.2 bits (308), Expect = 6.800e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSV--RNNGRTPDDGRTLRDCKFHIGDHLDVAIL 136
            +DR+KT P LLRVF K  GH+S  D+ +  K+ P  ++  YTW DATL+EL+ L+K+V P +RRR ARL F+ VYP   GR  +R VG      NGR  DDG+TL +  F IGD+LDVAI+
Sbjct:   34 VDREKTCPLLLRVFTKIGGHHSKEDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPASRRRDARLSFAFVYPDKNGRFVVREVGKTFSYGNGRRLDDGKTLGELSFEIGDYLDVAIM 153
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_002509676.1 (PREDICTED: histone deacetylase complex subunit SAP18 [Ricinus communis] >EEF51063.1 Histone deacetylase complex subunit SAP18, putative [Ricinus communis])

HSP 1 Score: 122.5 bits (306), Expect = 1.200e-24
Identity = 60/120 (50.00%), Postives = 78/120 (65.00%), Query Frame = 0 
Query:   16 LIDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSVRNNGRTPDDGRTLRDCKFHIGDHLDVAIL 136
            LIDR+KT P LLRVF K   H+   D+ +  K+    ++  YTW DATL+EL+ L+K+V P ARRR A+L F+ VYP   GR  +R VG   ++ R PDD R+L    F IGD+LDVAIL
Sbjct:   46 LIDREKTCPLLLRVFTKIGNHHKMEDFAVRGKEPKDDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKHGRFVLRMVGMTHSSARRPDDSRSLVQLGFQIGDYLDVAIL 165
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_021279660.1 (histone deacetylase complex subunit SAP18 [Herrania umbratica])

HSP 1 Score: 122.1 bits (305), Expect = 1.500e-24
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSV--RNNGRTPDDGRTLRDCKFHIGDHLDVAIL 136
            +DR+KT P LLRVF K  GH+S  D+ +  K+ P  ++  YTW DATL+EL+ L+K+V P ARRR ARL F+ VYP   GR  +R VG      NGR  DD +TL +  F IGD+LDVAI+
Sbjct:   34 VDREKTCPLLLRVFTKIGGHHSKEDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFVVREVGKTFSYGNGRRLDDSKTLGELSFEIGDYLDVAIM 153
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_022757139.1 (histone deacetylase complex subunit SAP18 [Durio zibethinus])

HSP 1 Score: 122.1 bits (305), Expect = 1.500e-24
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 0 
Query:   17 IDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSV--RNNGRTPDDGRTLRDCKFHIGDHLDVAIL 136
            +DR+KT P LLRVF K  GH+S  D+ +  K+ P  ++  YTW DATL+EL+ L+K+V P ARRR ARL F+ VYP   GR  +R VG      NGR  DD +TL +  F IGD+LDVAI+
Sbjct:   34 VDREKTCPLLLRVFTKIGGHHSKEDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFVVREVGKTFSYGNGRRLDDSKTLGELSFEIGDYLDVAIM 153
[Close]
BLAST of NO18G01320 vs. NCBI_GenBank
Match: XP_021646825.1 (histone deacetylase complex subunit SAP18-like isoform X1 [Hevea brasiliensis])

HSP 1 Score: 121.7 bits (304), Expect = 2.000e-24
Identity = 61/120 (50.83%), Postives = 78/120 (65.00%), Query Frame = 0 
Query:   16 LIDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSVRNNGRTPDDGRTLRDCKFHIGDHLDVAIL 136
            LIDR+KT P LLRVF K   H+   D+ +  K+ P  ++  YTW DATL+EL+ L+K+V P ARRR ARL F+ VYP   GR  +R VG   ++ R PDD   L +  F IGD+LDVAIL
Sbjct:   51 LIDREKTCPLLLRVFTKIGSHHKVEDFAVRGKE-PKDEVQIYTWKDATLRELTDLVKEVAPEARRRNARLSFAFVYPDKHGRFVLRVVGLTHSSARRPDDAMALGELSFQIGDYLDVAIL 169
The following BLAST results are available for this feature:
BLAST of NO18G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23350.11.200e-5880.62histone deacetylase complex subunit sap18 [Nannoch... [more]
XP_005855975.18.700e-5780.31histone deacetylase complex subunit SAP18 [Nannoch... [more]
XP_007051984.23.000e-2552.07PREDICTED: histone deacetylase complex subunit SAP... [more]
XP_002882023.14.000e-2550.83histone deacetylase complex subunit SAP18 [Arabido... [more]
GAV76669.15.200e-2551.67SAP18 domain-containing protein [Cephalotus follic... [more]
EOX96141.16.800e-2551.24SIN3 associated polypeptide P18 [Theobroma cacao][more]
XP_002509676.11.200e-2450.00PREDICTED: histone deacetylase complex subunit SAP... [more]
XP_021279660.11.500e-2451.24histone deacetylase complex subunit SAP18 [Herrani... [more]
XP_022757139.11.500e-2451.24histone deacetylase complex subunit SAP18 [Durio z... [more]
XP_021646825.12.000e-2450.83histone deacetylase complex subunit SAP18-like iso... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL008nonsL008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR060ncniR060Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR043ngnoR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003988NSK003988Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO18G01320.1NO18G01320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674271gene_9059Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100057g3gene7109Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO18G01320.1NO18G01320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO18G01320 ID=NO18G01320|Name=NO18G01320|organism=Nannochloropsis oceanica|type=gene|length=755bp
ATGATTGGTGGGCCTGAAGGGGCATGGGGTGGAGACGACGAAGGATTGAT
CGACCGAGACAAGgtgagacagtgcgcattgaaagaggggagggaggagg
gagggggcaaggaggctcggagtgaagcctctaagccaggctttgagccg
catcgtatgactgggaggatgcaacgggccccgatgcacttgcagaagtg
agtgatcccggaccacattgatattctgggtgaatttgaaggccgatgca
gtgcccagtcctttcacctttgccccctccccttcacctcaaaccaacca
tgcgaagccctttcaccgcaatcctccatccacgaattatcttccattta
cccctctagACGACACCCTCCTTGCTGCGCGTCTTTTGGAAGGAACACGG
GCACAACAGCGACCTAGACTATGGCCTGGAACCCAAGCAAGTACCCGGGC
AACAACTGCACTTTTACACGTGGCCAGATGCCACCCTCAAGGAGCTGAGT
CAATTGCTAAAGGACGTAGTACCTTGCGCCCGTCGTCGTGTAGCCCGGCT
GGAGTTCTCGTTGGTGTACCCAGGGCCGGAGGGTAGGATGAGGATGCGAG
CTGTGGGGTCGGTAAGGAACAATGGGAGGACGCCGGATGATGGGAGAACG
TTGCGGGATTGCAAATTTCATATTGGCGATCATTTGGACGTTGCCATTTT
GGACGAAGGAGGAGGTGGAGGGGGGGAGGAGGGAGAGGTTATGGTGGGGG
GATAG
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protein sequence of NO18G01320.1

>NO18G01320.1-protein ID=NO18G01320.1-protein|Name=NO18G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MIGGPEGAWGGDDEGLIDRDKTTPSLLRVFWKEHGHNSDLDYGLEPKQVP
GQQLHFYTWPDATLKELSQLLKDVVPCARRRVARLEFSLVYPGPEGRMRM
RAVGSVRNNGRTPDDGRTLRDCKFHIGDHLDVAILDEGGGGGGEEGEVMV
GG*
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Synonyms
Publications